RNA–Protein interactions for RNA: ENST00000488016.1

NECTIN3-209, Transcript of nectin cell adhesion molecule 3, humanhuman

TSL 3

Gene NECTIN3, Length 829 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECTIN3-209ENST00000488016 AEBP2Q6ZN18 517 aaPredicted RBP27.55■■■□□ 2
NECTIN3-209ENST00000488016 CHIC1Q5VXU3 224 aa26.53■■□□□ 1.84
NECTIN3-209ENST00000488016 SENP3Q9H4L4 574 aaPredicted RBP23.55■■□□□ 1.36
NECTIN3-209ENST00000488016 PHF23Q9BUL5 403 aaPredicted RBP23.24■■□□□ 1.31
NECTIN3-209ENST00000488016 FOXD1Q16676 465 aa21.84■■□□□ 1.09
NECTIN3-209ENST00000488016 PLPPR3Q6T4P5 718 aa21.4■■□□□ 1.02
NECTIN3-209ENST00000488016 ADRA2BP18089 450 aa20.63■□□□□ 0.89
NECTIN3-209ENST00000488016 PPP6R1Q9UPN7 881 aa20.63■□□□□ 0.89
NECTIN3-209ENST00000488016 PIAS4Q8N2W9 510 aaPredicted RBP20.56■□□□□ 0.88
NECTIN3-209ENST00000488016 MSH5O43196 834 aa20.39■□□□□ 0.85
NECTIN3-209ENST00000488016 POTEDQ86YR6 584 aa19.28■□□□□ 0.68
NECTIN3-209ENST00000488016 SCAF1Q9H7N4 1312 aaKnown RBP18.98■□□□□ 0.63
NECTIN3-209ENST00000488016 NISCHQ9Y2I1 1504 aa18.89■□□□□ 0.61
NECTIN3-209ENST00000488016 MAPK8IP2Q13387 824 aaPredicted RBP18.82■□□□□ 0.6
NECTIN3-209ENST00000488016 PPP4R3CPQ6ZMV5 832 aa18.78■□□□□ 0.6
NECTIN3-209ENST00000488016 DMRT2Q9Y5R5 561 aa18.7■□□□□ 0.58
NECTIN3-209ENST00000488016 CNKSR2Q8WXI2 1034 aa18.37■□□□□ 0.53
NECTIN3-209ENST00000488016 NCBP3Q53F19 620 aaKnown RBP18.22■□□□□ 0.51
NECTIN3-209ENST00000488016 HOXD11P31277 338 aaPredicted RBP18.12■□□□□ 0.49
NECTIN3-209ENST00000488016 RNF216Q9NWF9 866 aaPredicted RBP18.1■□□□□ 0.49
NECTIN3-209ENST00000488016 DCAF8L1A6NGE4 600 aa17.99■□□□□ 0.47
NECTIN3-209ENST00000488016 NPM3O75607 178 aaKnown RBP17.87■□□□□ 0.45
NECTIN3-209ENST00000488016 KCNA4P22459 653 aa17.81■□□□□ 0.44
NECTIN3-209ENST00000488016 DNAJC5BQ9UF47 199 aa17.44■□□□□ 0.38
NECTIN3-209ENST00000488016 RNF39Q9H2S5 420 aa17.37■□□□□ 0.37
NECTIN3-209ENST00000488016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.34■□□□□ 0.37
NECTIN3-209ENST00000488016 CACNB1Q02641 598 aaPredicted RBP17.3■□□□□ 0.36
NECTIN3-209ENST00000488016 C1QBPQ07021 282 aaKnown RBP17.18■□□□□ 0.34
NECTIN3-209ENST00000488016 SLC4A2P04920 1241 aa16.95■□□□□ 0.3
NECTIN3-209ENST00000488016 SLC4A1APQ9BWU0 796 aaKnown RBP16.94■□□□□ 0.3
NECTIN3-209ENST00000488016 U3KPZ7 1027 aaPredicted RBP16.94■□□□□ 0.3
NECTIN3-209ENST00000488016 CCDC180Q9P1Z9 1646 aa16.72■□□□□ 0.27
NECTIN3-209ENST00000488016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.67■□□□□ 0.26
NECTIN3-209ENST00000488016 HNRNPUL2Q1KMD3 747 aaKnown RBP16.67■□□□□ 0.26
NECTIN3-209ENST00000488016 APLP2Q06481 763 aa16.64■□□□□ 0.25
NECTIN3-209ENST00000488016 CAPN15O75808 1086 aa16.62■□□□□ 0.25
NECTIN3-209ENST00000488016 SPINK5Q9NQ38 1064 aaPredicted RBP16.6■□□□□ 0.25
NECTIN3-209ENST00000488016 MYCNP04198 464 aaPredicted RBP16.58■□□□□ 0.24
NECTIN3-209ENST00000488016 SAMD1Q6SPF0 538 aaPredicted RBP16.57■□□□□ 0.24
NECTIN3-209ENST00000488016 FOXD4L1Q9NU39 408 aa16.57■□□□□ 0.24
NECTIN3-209ENST00000488016 ABCC9O60706 1549 aa16.55■□□□□ 0.24
NECTIN3-209ENST00000488016 TRHP20396 242 aaPredicted RBP16.42■□□□□ 0.22
NECTIN3-209ENST00000488016 ZNF219Q9P2Y4 722 aaPredicted RBP16.42■□□□□ 0.22
NECTIN3-209ENST00000488016 DSG3P32926 999 aa16.39■□□□□ 0.21
NECTIN3-209ENST00000488016 ZBTB22O15209 634 aa16.33■□□□□ 0.2
NECTIN3-209ENST00000488016 ABCB7O75027 752 aa16.23■□□□□ 0.19
NECTIN3-209ENST00000488016 ATF5Q9Y2D1 282 aaPredicted RBP16.07■□□□□ 0.16
NECTIN3-209ENST00000488016 ATXN8OSP0DMR3 200 aa16.03■□□□□ 0.16
NECTIN3-209ENST00000488016 POLA2Q14181 598 aa16.03■□□□□ 0.16
NECTIN3-209ENST00000488016 EHMT2Q96KQ7 1210 aa15.95■□□□□ 0.14
NECTIN3-209ENST00000488016 CSRNP3Q8WYN3 585 aa15.91■□□□□ 0.14
NECTIN3-209ENST00000488016 DCAF8L2P0C7V8 631 aa15.84■□□□□ 0.13
NECTIN3-209ENST00000488016 ZBTB12Q9Y330 459 aaPredicted RBP15.81■□□□□ 0.12
NECTIN3-209ENST00000488016 ZCCHC6Q5VYS8 1495 aaKnown RBP15.75■□□□□ 0.11
NECTIN3-209ENST00000488016 RB1CC1Q8TDY2 1594 aa15.74■□□□□ 0.11
NECTIN3-209ENST00000488016 RBM42Q9BTD8 480 aaKnown RBP15.71■□□□□ 0.11
NECTIN3-209ENST00000488016 NACADO15069 1562 aa15.7■□□□□ 0.1
NECTIN3-209ENST00000488016 FBLN2P98095 1184 aa15.56■□□□□ 0.08
NECTIN3-209ENST00000488016 MYO15BQ96JP2 1530 aa15.56■□□□□ 0.08
NECTIN3-209ENST00000488016 DCAF1Q9Y4B6 1507 aa15.53■□□□□ 0.08
NECTIN3-209ENST00000488016 OSCARQ8IYS5 282 aa15.51■□□□□ 0.07
NECTIN3-209ENST00000488016 UNC13AQ9UPW8 1703 aa15.48■□□□□ 0.07
NECTIN3-209ENST00000488016 PABPN1Q86U42 306 aaKnown RBP eCLIP15.43■□□□□ 0.06
NECTIN3-209ENST00000488016 SCRIBQ14160 1630 aa15.4■□□□□ 0.06
NECTIN3-209ENST00000488016 AKT1S1Q96B36 256 aa15.39■□□□□ 0.05
NECTIN3-209ENST00000488016 MKRN4PQ13434 485 aaPredicted RBP15.36■□□□□ 0.05
NECTIN3-209ENST00000488016 BICRAQ9NZM4 1560 aa15.36■□□□□ 0.05
NECTIN3-209ENST00000488016 SPDYE2BA6NHP3 402 aa15.31■□□□□ 0.04
NECTIN3-209ENST00000488016 SPDYE6P0CI01 402 aa15.31■□□□□ 0.04
NECTIN3-209ENST00000488016 SPDYE2Q495Y8 402 aa15.31■□□□□ 0.04
NECTIN3-209ENST00000488016 REM2Q8IYK8 340 aaPredicted RBP15.21■□□□□ 0.03
NECTIN3-209ENST00000488016 POTEHQ6S545 545 aa15.2■□□□□ 0.02
NECTIN3-209ENST00000488016 CHRDL2Q6WN34 429 aa15.18■□□□□ 0.02
NECTIN3-209ENST00000488016 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
NECTIN3-209ENST00000488016 DNAJC5Q9H3Z4 198 aa15.16■□□□□ 0.02
NECTIN3-209ENST00000488016 SSUH2Q9Y2M2 353 aa15.09■□□□□ 0.01
NECTIN3-209ENST00000488016 SHROOM4Q9ULL8 1493 aa15.08■□□□□ 0.01
NECTIN3-209ENST00000488016 PITPNM1O00562 1244 aa15.04■□□□□ -0
NECTIN3-209ENST00000488016 SPDYE1Q8NFV5 336 aaPredicted RBP14.97□□□□□ -0.01
NECTIN3-209ENST00000488016 CLEC11AQ9Y240 323 aa14.93□□□□□ -0.02
NECTIN3-209ENST00000488016 CECR2Q9BXF3 1484 aa14.93□□□□□ -0.02
NECTIN3-209ENST00000488016 EIF4G1Q04637 1599 aaKnown RBP14.92□□□□□ -0.02
NECTIN3-209ENST00000488016 SPDYE4A6NLX3 237 aa14.88□□□□□ -0.03
NECTIN3-209ENST00000488016 PIP4P2Q8N4L2 257 aa14.88□□□□□ -0.03
NECTIN3-209ENST00000488016 CC2D2AQ9P2K1 1620 aa14.88□□□□□ -0.03
NECTIN3-209ENST00000488016 FXR2P51116 673 aaKnown RBP eCLIP14.84□□□□□ -0.03
NECTIN3-209ENST00000488016 PRR29P0C7W0 189 aa14.73□□□□□ -0.05
NECTIN3-209ENST00000488016 PRKAR2AP13861 404 aaKnown RBP14.69□□□□□ -0.06
NECTIN3-209ENST00000488016 SMARCA4P51532 1647 aa14.67□□□□□ -0.06
NECTIN3-209ENST00000488016 STAG3Q9UJ98 1225 aa14.65□□□□□ -0.06
NECTIN3-209ENST00000488016 MROH2BQ7Z745 1585 aa14.61□□□□□ -0.07
NECTIN3-209ENST00000488016 BAZ1AQ9NRL2 1556 aaPredicted RBP14.6□□□□□ -0.07
NECTIN3-209ENST00000488016 ATAD2BQ9ULI0 1458 aa14.57□□□□□ -0.08
NECTIN3-209ENST00000488016 HAX1O00165 279 aa14.56□□□□□ -0.08
NECTIN3-209ENST00000488016 CHADLQ6NUI6 762 aa14.56□□□□□ -0.08
NECTIN3-209ENST00000488016 NCAPD3P42695 1498 aa14.51□□□□□ -0.09
NECTIN3-209ENST00000488016 PROM2Q8N271 834 aa14.5□□□□□ -0.09
NECTIN3-209ENST00000488016 SMARCA2P51531 1590 aa14.5□□□□□ -0.09
NECTIN3-209ENST00000488016 FKBP8Q14318 412 aa14.48□□□□□ -0.09
NECTIN3-209ENST00000488016 WIZO95785 1651 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms