RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 CSRNP3Q8WYN3 585 aa11.14□□□□□ -0.63
PTPRE-209ENST00000487428 ARHGEF11O15085 1522 aa11.13□□□□□ -0.63
PTPRE-209ENST00000487428 RIMBP3CA6NJZ7 1639 aa11.12□□□□□ -0.63
PTPRE-209ENST00000487428 RIMBP3BA6NNM3 1639 aa11.12□□□□□ -0.63
PTPRE-209ENST00000487428 RIMBP3Q9UFD9 1639 aa11.12□□□□□ -0.63
PTPRE-209ENST00000487428 IQGAP2Q13576 1575 aa11.11□□□□□ -0.63
PTPRE-209ENST00000487428 UGGT2Q9NYU1 1516 aa11.09□□□□□ -0.63
PTPRE-209ENST00000487428 JPH4Q96JJ6 628 aa11.05□□□□□ -0.64
PTPRE-209ENST00000487428 GOLGA3Q08378 1498 aa11.04□□□□□ -0.64
PTPRE-209ENST00000487428 ARAP1Q96P48 1450 aa11.03□□□□□ -0.64
PTPRE-209ENST00000487428 PRG4Q92954 1404 aaPredicted RBP11.02□□□□□ -0.64
PTPRE-209ENST00000487428 CARMIL2Q6F5E8 1435 aa11.01□□□□□ -0.65
PTPRE-209ENST00000487428 DISP1Q96F81 1524 aa11.01□□□□□ -0.65
PTPRE-209ENST00000487428 SAMD9Q5K651 1589 aa11.01□□□□□ -0.65
PTPRE-209ENST00000487428 ERCC6L2Q5T890 1561 aa11.01□□□□□ -0.65
PTPRE-209ENST00000487428 KIAA0556O60303 1618 aa11.01□□□□□ -0.65
PTPRE-209ENST00000487428 EFCAB5A4FU69 1503 aa10.99□□□□□ -0.65
PTPRE-209ENST00000487428 TNIKQ9UKE5 1360 aa10.96□□□□□ -0.65
PTPRE-209ENST00000487428 UHRF1BP1LA0JNW5 1464 aa10.94□□□□□ -0.66
PTPRE-209ENST00000487428 FAM9AQ8IZU1 332 aaPredicted RBP10.92□□□□□ -0.66
PTPRE-209ENST00000487428 PTPRGP23470 1445 aa10.92□□□□□ -0.66
PTPRE-209ENST00000487428 ADCY10Q96PN6 1610 aa10.9□□□□□ -0.66
PTPRE-209ENST00000487428 ABCA8O94911 1581 aa10.9□□□□□ -0.67
PTPRE-209ENST00000487428 ABCC2Q92887 1545 aa10.89□□□□□ -0.67
PTPRE-209ENST00000487428 CYB5RLQ6IPT4 315 aa10.89□□□□□ -0.67
PTPRE-209ENST00000487428 UACAQ9BZF9 1416 aa10.88□□□□□ -0.67
PTPRE-209ENST00000487428 MAPKBP1O60336 1514 aa10.88□□□□□ -0.67
PTPRE-209ENST00000487428 KDM5BQ9UGL1 1544 aa10.87□□□□□ -0.67
PTPRE-209ENST00000487428 ARHGAP35Q9NRY4 1499 aa10.87□□□□□ -0.67
PTPRE-209ENST00000487428 UBTFP17480 764 aaKnown RBP10.86□□□□□ -0.67
PTPRE-209ENST00000487428 RAPGEF6Q8TEU7 1601 aa10.84□□□□□ -0.67
PTPRE-209ENST00000487428 FMN1Q68DA7 1419 aa10.84□□□□□ -0.67
PTPRE-209ENST00000487428 PLB1Q6P1J6 1458 aa10.81□□□□□ -0.68
PTPRE-209ENST00000487428 ZCCHC11Q5TAX3 1644 aaKnown RBP10.8□□□□□ -0.68
PTPRE-209ENST00000487428 CLIP1P30622 1438 aa10.8□□□□□ -0.68
PTPRE-209ENST00000487428 KIF13AQ9H1H9 1805 aa10.79□□□□□ -0.68
PTPRE-209ENST00000487428 FHOD3Q2V2M9 1422 aa10.79□□□□□ -0.68
PTPRE-209ENST00000487428 HECW1Q76N89 1606 aa10.78□□□□□ -0.68
PTPRE-209ENST00000487428 GLI2P10070 1586 aa10.77□□□□□ -0.68
PTPRE-209ENST00000487428 CEP162Q5TB80 1403 aa10.77□□□□□ -0.68
PTPRE-209ENST00000487428 NUP153P49790 1475 aaKnown RBP10.77□□□□□ -0.69
PTPRE-209ENST00000487428 ABCC10Q5T3U5 1492 aa10.76□□□□□ -0.69
PTPRE-209ENST00000487428 NPM1P06748 294 aaKnown RBP eCLIP10.76□□□□□ -0.69
PTPRE-209ENST00000487428 CASKIN1Q8WXD9 1431 aa10.75□□□□□ -0.69
PTPRE-209ENST00000487428 ATP10BO94823 1461 aa10.75□□□□□ -0.69
PTPRE-209ENST00000487428 FYCO1Q9BQS8 1478 aa10.75□□□□□ -0.69
PTPRE-209ENST00000487428 DIP2BQ9P265 1576 aa10.75□□□□□ -0.69
PTPRE-209ENST00000487428 LRRIQ1Q96JM4 1722 aa10.75□□□□□ -0.69
PTPRE-209ENST00000487428 CCDC18Q5T9S5 1454 aa10.74□□□□□ -0.69
PTPRE-209ENST00000487428 WDR7Q9Y4E6 1490 aa10.73□□□□□ -0.69
PTPRE-209ENST00000487428 ASXL2Q76L83 1435 aa10.72□□□□□ -0.69
PTPRE-209ENST00000487428 EPRSP07814 1512 aaKnown RBP10.72□□□□□ -0.69
PTPRE-209ENST00000487428 PCF11O94913 1555 aaKnown RBP10.72□□□□□ -0.69
PTPRE-209ENST00000487428 P3H3Q8IVL6 736 aa10.71□□□□□ -0.69
PTPRE-209ENST00000487428 CFAP43Q8NDM7 1665 aa10.71□□□□□ -0.69
PTPRE-209ENST00000487428 MAP3K4Q9Y6R4 1608 aa10.71□□□□□ -0.69
PTPRE-209ENST00000487428 LOC105371045A0A1W2PR82 267 aa10.7□□□□□ -0.7
PTPRE-209ENST00000487428 ABCA9Q8IUA7 1624 aa10.69□□□□□ -0.7
PTPRE-209ENST00000487428 MAP3K1Q13233 1512 aa10.69□□□□□ -0.7
PTPRE-209ENST00000487428 VPS8Q8N3P4 1428 aa10.68□□□□□ -0.7
PTPRE-209ENST00000487428 PPRC1Q5VV67 1664 aaKnown RBP10.66□□□□□ -0.7
PTPRE-209ENST00000487428 ARAP3Q8WWN8 1544 aa10.65□□□□□ -0.7
PTPRE-209ENST00000487428 EHMT2Q96KQ7 1210 aa10.65□□□□□ -0.7
PTPRE-209ENST00000487428 CDK13Q14004 1512 aaKnown RBP10.64□□□□□ -0.71
PTPRE-209ENST00000487428 MAGI3Q5TCQ9 1506 aa10.64□□□□□ -0.71
PTPRE-209ENST00000487428 RANGAP1P46060 587 aaPredicted RBP10.64□□□□□ -0.71
PTPRE-209ENST00000487428 CDK11AQ9UQ88 783 aaPredicted RBP10.64□□□□□ -0.71
PTPRE-209ENST00000487428 TROQ12816 1431 aaPredicted RBP10.64□□□□□ -0.71
PTPRE-209ENST00000487428 TTBK1Q5TCY1 1321 aaPredicted RBP10.63□□□□□ -0.71
PTPRE-209ENST00000487428 PLEKHD1A6NEE1 506 aa10.62□□□□□ -0.71
PTPRE-209ENST00000487428 PHLDB1Q86UU1 1377 aa10.62□□□□□ -0.71
PTPRE-209ENST00000487428 KIF14Q15058 1648 aa10.62□□□□□ -0.71
PTPRE-209ENST00000487428 TEX14Q8IWB6 1497 aa10.61□□□□□ -0.71
PTPRE-209ENST00000487428 TIAM1Q13009 1591 aa10.61□□□□□ -0.71
PTPRE-209ENST00000487428 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.61□□□□□ -0.71
PTPRE-209ENST00000487428 MYO5CQ9NQX4 1742 aa10.61□□□□□ -0.71
PTPRE-209ENST00000487428 EHBP1L1Q8N3D4 1523 aa10.6□□□□□ -0.71
PTPRE-209ENST00000487428 TSPOAP1O95153 1857 aa10.6□□□□□ -0.71
PTPRE-209ENST00000487428 FAM69CQ0P6D2 419 aa10.6□□□□□ -0.71
PTPRE-209ENST00000487428 CFAP74Q9C0B2 1584 aa10.6□□□□□ -0.71
PTPRE-209ENST00000487428 CD109Q6YHK3 1445 aa10.58□□□□□ -0.72
PTPRE-209ENST00000487428 TTC37Q6PGP7 1564 aa10.58□□□□□ -0.72
PTPRE-209ENST00000487428 NEO1Q92859 1461 aa10.58□□□□□ -0.72
PTPRE-209ENST00000487428 TRHP20396 242 aaPredicted RBP10.57□□□□□ -0.72
PTPRE-209ENST00000487428 CDC42BPAQ5VT25 1732 aa10.57□□□□□ -0.72
PTPRE-209ENST00000487428 PREX2Q70Z35 1606 aa10.57□□□□□ -0.72
PTPRE-209ENST00000487428 SUPT6HQ7KZ85 1726 aaKnown RBP10.56□□□□□ -0.72
PTPRE-209ENST00000487428 CDC42BPBQ9Y5S2 1711 aa10.56□□□□□ -0.72
PTPRE-209ENST00000487428 PLCH2O75038 1416 aa10.56□□□□□ -0.72
PTPRE-209ENST00000487428 ITSN2Q9NZM3 1697 aa10.55□□□□□ -0.72
PTPRE-209ENST00000487428 LRRC9Q6ZRR7 1453 aa10.55□□□□□ -0.72
PTPRE-209ENST00000487428 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.54□□□□□ -0.72
PTPRE-209ENST00000487428 HNRNPUL2Q1KMD3 747 aaKnown RBP10.54□□□□□ -0.72
PTPRE-209ENST00000487428 MTUS2Q5JR59 1369 aa10.52□□□□□ -0.72
PTPRE-209ENST00000487428 KDM6BO15054 1643 aa10.51□□□□□ -0.73
PTPRE-209ENST00000487428 KCNH8Q96L42 1107 aa10.51□□□□□ -0.73
PTPRE-209ENST00000487428 RICTORQ6R327 1708 aa10.5□□□□□ -0.73
PTPRE-209ENST00000487428 FANCAO15360 1455 aa10.5□□□□□ -0.73
PTPRE-209ENST00000487428 ARID3CA6NKF2 412 aa10.5□□□□□ -0.73
PTPRE-209ENST00000487428 ATP1B4Q9UN42 357 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms