RNA–Protein interactions for RNA: ENST00000487194.1

VAMP3-203, Transcript of vesicle associated membrane protein 3, humanhuman

TSL 4

Gene VAMP3, Length 274 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-203ENST00000487194 EFCAB5A4FU69 1503 aa9.62□□□□□ -0.87
VAMP3-203ENST00000487194 SYNJ2O15056 1496 aa9.62□□□□□ -0.87
VAMP3-203ENST00000487194 ARHGAP35Q9NRY4 1499 aa9.62□□□□□ -0.87
VAMP3-203ENST00000487194 ARAP1Q96P48 1450 aa9.61□□□□□ -0.87
VAMP3-203ENST00000487194 AEBP2Q6ZN18 517 aaPredicted RBP9.61□□□□□ -0.87
VAMP3-203ENST00000487194 GRIN2AQ12879 1464 aa9.6□□□□□ -0.87
VAMP3-203ENST00000487194 CHMP7Q8WUX9 453 aaPredicted RBP9.6□□□□□ -0.87
VAMP3-203ENST00000487194 APLP2Q06481 763 aa9.59□□□□□ -0.87
VAMP3-203ENST00000487194 TRIM26Q12899 539 aaPredicted RBP9.59□□□□□ -0.87
VAMP3-203ENST00000487194 IQGAP2Q13576 1575 aa9.58□□□□□ -0.88
VAMP3-203ENST00000487194 KIAA0586Q9BVV6 1533 aa9.57□□□□□ -0.88
VAMP3-203ENST00000487194 SAMD9Q5K651 1589 aa9.55□□□□□ -0.88
VAMP3-203ENST00000487194 FBLN2P98095 1184 aa9.55□□□□□ -0.88
VAMP3-203ENST00000487194 FMN1Q68DA7 1419 aa9.55□□□□□ -0.88
VAMP3-203ENST00000487194 NUP160Q12769 1436 aa9.54□□□□□ -0.88
VAMP3-203ENST00000487194 UGGT2Q9NYU1 1516 aa9.53□□□□□ -0.88
VAMP3-203ENST00000487194 PCGF6Q9BYE7 350 aa9.53□□□□□ -0.88
VAMP3-203ENST00000487194 FHOD3Q2V2M9 1422 aa9.53□□□□□ -0.88
VAMP3-203ENST00000487194 P3H3Q8IVL6 736 aa9.52□□□□□ -0.89
VAMP3-203ENST00000487194 CEP170Q5SW79 1584 aa9.51□□□□□ -0.89
VAMP3-203ENST00000487194 MAP3K1Q13233 1512 aa9.51□□□□□ -0.89
VAMP3-203ENST00000487194 CASKIN1Q8WXD9 1431 aa9.5□□□□□ -0.89
VAMP3-203ENST00000487194 PPARGC1BQ86YN6 1023 aaKnown RBP9.5□□□□□ -0.89
VAMP3-203ENST00000487194 FYCO1Q9BQS8 1478 aa9.5□□□□□ -0.89
VAMP3-203ENST00000487194 CARMIL2Q6F5E8 1435 aa9.48□□□□□ -0.89
VAMP3-203ENST00000487194 PCF11O94913 1555 aaKnown RBP9.47□□□□□ -0.89
VAMP3-203ENST00000487194 KIAA0556O60303 1618 aa9.47□□□□□ -0.89
VAMP3-203ENST00000487194 JPH4Q96JJ6 628 aa9.47□□□□□ -0.89
VAMP3-203ENST00000487194 CHD1O14646 1710 aa9.47□□□□□ -0.89
VAMP3-203ENST00000487194 DISP1Q96F81 1524 aa9.46□□□□□ -0.89
VAMP3-203ENST00000487194 TIAM1Q13009 1591 aa9.46□□□□□ -0.9
VAMP3-203ENST00000487194 ATP1B4Q9UN42 357 aaPredicted RBP9.44□□□□□ -0.9
VAMP3-203ENST00000487194 TTBK1Q5TCY1 1321 aaPredicted RBP9.44□□□□□ -0.9
VAMP3-203ENST00000487194 CFAP43Q8NDM7 1665 aa9.43□□□□□ -0.9
VAMP3-203ENST00000487194 HECW1Q76N89 1606 aa9.42□□□□□ -0.9
VAMP3-203ENST00000487194 CCDC18Q5T9S5 1454 aa9.42□□□□□ -0.9
VAMP3-203ENST00000487194 LRRC9Q6ZRR7 1453 aa9.42□□□□□ -0.9
VAMP3-203ENST00000487194 KANK4Q5T7N3 995 aaPredicted RBP9.42□□□□□ -0.9
VAMP3-203ENST00000487194 PRG4Q92954 1404 aaPredicted RBP9.4□□□□□ -0.9
VAMP3-203ENST00000487194 SHROOM2Q13796 1616 aa9.4□□□□□ -0.9
VAMP3-203ENST00000487194 CLASP1Q7Z460 1538 aa9.39□□□□□ -0.91
VAMP3-203ENST00000487194 RAPGEF6Q8TEU7 1601 aa9.38□□□□□ -0.91
VAMP3-203ENST00000487194 MTUS2Q5JR59 1369 aa9.37□□□□□ -0.91
VAMP3-203ENST00000487194 EPRSP07814 1512 aaKnown RBP9.37□□□□□ -0.91
VAMP3-203ENST00000487194 CDK11AQ9UQ88 783 aaPredicted RBP9.36□□□□□ -0.91
VAMP3-203ENST00000487194 PTPRGP23470 1445 aa9.36□□□□□ -0.91
VAMP3-203ENST00000487194 RRBP1Q9P2E9 1410 aaKnown RBP9.36□□□□□ -0.91
VAMP3-203ENST00000487194 EHBP1L1Q8N3D4 1523 aa9.36□□□□□ -0.91
VAMP3-203ENST00000487194 NUP153P49790 1475 aaKnown RBP9.34□□□□□ -0.91
VAMP3-203ENST00000487194 LRRIQ1Q96JM4 1722 aa9.34□□□□□ -0.91
VAMP3-203ENST00000487194 OSCARQ8IYS5 282 aa9.34□□□□□ -0.91
VAMP3-203ENST00000487194 ABCA8O94911 1581 aa9.33□□□□□ -0.92
VAMP3-203ENST00000487194 CCNB3Q8WWL7 1395 aa9.33□□□□□ -0.92
VAMP3-203ENST00000487194 PLB1Q6P1J6 1458 aa9.33□□□□□ -0.92
VAMP3-203ENST00000487194 SUPT6HQ7KZ85 1726 aaKnown RBP9.32□□□□□ -0.92
VAMP3-203ENST00000487194 CDK13Q14004 1512 aaKnown RBP9.31□□□□□ -0.92
VAMP3-203ENST00000487194 ILDR1Q86SU0 546 aaPredicted RBP9.31□□□□□ -0.92
VAMP3-203ENST00000487194 PHLDB1Q86UU1 1377 aa9.31□□□□□ -0.92
VAMP3-203ENST00000487194 NCOA2Q15596 1464 aa9.31□□□□□ -0.92
VAMP3-203ENST00000487194 UACAQ9BZF9 1416 aa9.31□□□□□ -0.92
VAMP3-203ENST00000487194 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.3□□□□□ -0.92
VAMP3-203ENST00000487194 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.3□□□□□ -0.92
VAMP3-203ENST00000487194 HNRNPUL2Q1KMD3 747 aaKnown RBP9.3□□□□□ -0.92
VAMP3-203ENST00000487194 ARHGEF11O15085 1522 aa9.29□□□□□ -0.92
VAMP3-203ENST00000487194 MAGI3Q5TCQ9 1506 aa9.29□□□□□ -0.92
VAMP3-203ENST00000487194 ARID3CA6NKF2 412 aa9.28□□□□□ -0.92
VAMP3-203ENST00000487194 TROQ12816 1431 aaPredicted RBP9.28□□□□□ -0.92
VAMP3-203ENST00000487194 MYOM3Q5VTT5 1437 aa9.28□□□□□ -0.92
VAMP3-203ENST00000487194 ERCC6L2Q5T890 1561 aa9.28□□□□□ -0.92
VAMP3-203ENST00000487194 ATP10BO94823 1461 aa9.28□□□□□ -0.92
VAMP3-203ENST00000487194 ABCC2Q92887 1545 aa9.27□□□□□ -0.93
VAMP3-203ENST00000487194 PLEKHD1A6NEE1 506 aa9.27□□□□□ -0.93
VAMP3-203ENST00000487194 FGD6Q6ZV73 1430 aa9.27□□□□□ -0.93
VAMP3-203ENST00000487194 UHRF1BP1LA0JNW5 1464 aa9.27□□□□□ -0.93
VAMP3-203ENST00000487194 MIA2Q96PC5 1412 aa9.25□□□□□ -0.93
VAMP3-203ENST00000487194 HRCP23327 699 aa9.25□□□□□ -0.93
VAMP3-203ENST00000487194 FAM50AQ14320 339 aaKnown RBP9.25□□□□□ -0.93
VAMP3-203ENST00000487194 ADCY10Q96PN6 1610 aa9.24□□□□□ -0.93
VAMP3-203ENST00000487194 ZEB1P37275 1124 aaPredicted RBP9.24□□□□□ -0.93
VAMP3-203ENST00000487194 KIF14Q15058 1648 aa9.22□□□□□ -0.93
VAMP3-203ENST00000487194 TCOF1Q13428 1488 aaKnown RBP9.21□□□□□ -0.93
VAMP3-203ENST00000487194 KDM5BQ9UGL1 1544 aa9.21□□□□□ -0.93
VAMP3-203ENST00000487194 PTPN23Q9H3S7 1636 aa9.21□□□□□ -0.93
VAMP3-203ENST00000487194 ITGAEP38570 1179 aa9.2□□□□□ -0.94
VAMP3-203ENST00000487194 CCER1Q8TC90 406 aaPredicted RBP9.2□□□□□ -0.94
VAMP3-203ENST00000487194 ITSN2Q9NZM3 1697 aa9.2□□□□□ -0.94
VAMP3-203ENST00000487194 ABCC10Q5T3U5 1492 aa9.18□□□□□ -0.94
VAMP3-203ENST00000487194 ZCCHC11Q5TAX3 1644 aaKnown RBP9.18□□□□□ -0.94
VAMP3-203ENST00000487194 CFDP1Q9UEE9 299 aaPredicted RBP9.18□□□□□ -0.94
VAMP3-203ENST00000487194 GPATCH8Q9UKJ3 1502 aaKnown RBP9.18□□□□□ -0.94
VAMP3-203ENST00000487194 SETD5Q9C0A6 1442 aa9.16□□□□□ -0.94
VAMP3-203ENST00000487194 NPM1P06748 294 aaKnown RBP eCLIP9.16□□□□□ -0.94
VAMP3-203ENST00000487194 CAMSAP2Q08AD1 1489 aa9.14□□□□□ -0.95
VAMP3-203ENST00000487194 HFM1A2PYH4 1435 aa9.14□□□□□ -0.95
VAMP3-203ENST00000487194 AKNAQ7Z591 1439 aa9.14□□□□□ -0.95
VAMP3-203ENST00000487194 RAB3GAP2Q9H2M9 1393 aa9.13□□□□□ -0.95
VAMP3-203ENST00000487194 CLSPNQ9HAW4 1339 aa9.13□□□□□ -0.95
VAMP3-203ENST00000487194 ACIN1Q9UKV3 1341 aaKnown RBP9.13□□□□□ -0.95
VAMP3-203ENST00000487194 TRHP20396 242 aaPredicted RBP9.13□□□□□ -0.95
VAMP3-203ENST00000487194 CDC42BPAQ5VT25 1732 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms