RNA–Protein interactions for RNA: ENST00000485591.1

COL6A2-208, Transcript of collagen type VI alpha 2 chain, human

TSL 3

Gene COL6A2, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL6A2-208	ENST00000485591	KIAA0586	Q9BVV6	1533 aa		32.93	■■■□□ 2.86
COL6A2-208	ENST00000485591	SHROOM2	Q13796	1616 aa		32.92	■■■□□ 2.86
COL6A2-208	ENST00000485591	IQGAP2	Q13576	1575 aa		32.86	■■■□□ 2.85
COL6A2-208	ENST00000485591	GOLGA3	Q08378	1498 aa		32.8	■■■□□ 2.84
COL6A2-208	ENST00000485591	ARHGEF11	O15085	1522 aa		32.8	■■■□□ 2.84
COL6A2-208	ENST00000485591	RIMBP3C	A6NJZ7	1639 aa		32.79	■■■□□ 2.84
COL6A2-208	ENST00000485591	RIMBP3B	A6NNM3	1639 aa		32.79	■■■□□ 2.84
COL6A2-208	ENST00000485591	RIMBP3	Q9UFD9	1639 aa		32.79	■■■□□ 2.84
COL6A2-208	ENST00000485591	JPH4	Q96JJ6	628 aa		32.72	■■■□□ 2.83
COL6A2-208	ENST00000485591	UGGT2	Q9NYU1	1516 aa		32.68	■■■□□ 2.82
COL6A2-208	ENST00000485591	ERCC6L2	Q5T890	1561 aa		32.68	■■■□□ 2.82
COL6A2-208	ENST00000485591	PRG4	Q92954	1404 aa	Predicted RBP	32.68	■■■□□ 2.82
COL6A2-208	ENST00000485591	EHMT2	Q96KQ7	1210 aa		32.59	■■■□□ 2.81
COL6A2-208	ENST00000485591	UBTF	P17480	764 aa	Known RBP	32.57	■■■□□ 2.8
COL6A2-208	ENST00000485591	ARAP1	Q96P48	1450 aa		32.56	■■■□□ 2.8
COL6A2-208	ENST00000485591	DISP1	Q96F81	1524 aa		32.56	■■■□□ 2.8
COL6A2-208	ENST00000485591	KIAA0556	O60303	1618 aa		32.55	■■■□□ 2.8
COL6A2-208	ENST00000485591	CARMIL2	Q6F5E8	1435 aa		32.54	■■■□□ 2.8
COL6A2-208	ENST00000485591	SAMD9	Q5K651	1589 aa		32.5	■■■□□ 2.79
COL6A2-208	ENST00000485591	TNIK	Q9UKE5	1360 aa		32.44	■■■□□ 2.78
COL6A2-208	ENST00000485591	EFCAB5	A4FU69	1503 aa		32.42	■■■□□ 2.78
COL6A2-208	ENST00000485591	CYB5RL	Q6IPT4	315 aa		32.35	■■■□□ 2.77
COL6A2-208	ENST00000485591	PTPRG	P23470	1445 aa		32.32	■■■□□ 2.76
COL6A2-208	ENST00000485591	RANGAP1	P46060	587 aa	Predicted RBP	32.31	■■■□□ 2.76
COL6A2-208	ENST00000485591	LOC105371045	A0A1W2PR82	267 aa		32.3	■■■□□ 2.76
COL6A2-208	ENST00000485591	ARHGAP35	Q9NRY4	1499 aa		32.28	■■■□□ 2.76
COL6A2-208	ENST00000485591	FHOD3	Q2V2M9	1422 aa		32.23	■■■□□ 2.75
COL6A2-208	ENST00000485591	P3H3	Q8IVL6	736 aa		32.22	■■■□□ 2.75
COL6A2-208	ENST00000485591	CLIP1	P30622	1438 aa		32.2	■■■□□ 2.75
COL6A2-208	ENST00000485591	ADCY10	Q96PN6	1610 aa		32.2	■■■□□ 2.75
COL6A2-208	ENST00000485591	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.19	■■■□□ 2.74
COL6A2-208	ENST00000485591	CEP162	Q5TB80	1403 aa		32.17	■■■□□ 2.74
COL6A2-208	ENST00000485591	ABCA8	O94911	1581 aa		32.15	■■■□□ 2.74
COL6A2-208	ENST00000485591	UACA	Q9BZF9	1416 aa		32.15	■■■□□ 2.74
COL6A2-208	ENST00000485591	UHRF1BP1L	A0JNW5	1464 aa		32.14	■■■□□ 2.74
COL6A2-208	ENST00000485591	ABCC2	Q92887	1545 aa		32.14	■■■□□ 2.74
COL6A2-208	ENST00000485591	PLB1	Q6P1J6	1458 aa		32.11	■■■□□ 2.73
COL6A2-208	ENST00000485591	RAPGEF6	Q8TEU7	1601 aa		32.08	■■■□□ 2.73
COL6A2-208	ENST00000485591	FMN1	Q68DA7	1419 aa		32.06	■■■□□ 2.72
COL6A2-208	ENST00000485591	KDM5B	Q9UGL1	1544 aa		31.98	■■■□□ 2.71
COL6A2-208	ENST00000485591	ZCCHC11	Q5TAX3	1644 aa	Known RBP	31.97	■■■□□ 2.71
COL6A2-208	ENST00000485591	HECW1	Q76N89	1606 aa		31.93	■■■□□ 2.7
COL6A2-208	ENST00000485591	NUP153	P49790	1475 aa	Known RBP	31.92	■■■□□ 2.7
COL6A2-208	ENST00000485591	PCF11	O94913	1555 aa	Known RBP	31.92	■■■□□ 2.7
COL6A2-208	ENST00000485591	MAPKBP1	O60336	1514 aa		31.91	■■■□□ 2.7
COL6A2-208	ENST00000485591	NPM1	P06748	294 aa	Known RBP eCLIP	31.91	■■■□□ 2.7
COL6A2-208	ENST00000485591	CASKIN1	Q8WXD9	1431 aa		31.85	■■■□□ 2.69
COL6A2-208	ENST00000485591	FYCO1	Q9BQS8	1478 aa		31.84	■■■□□ 2.69
COL6A2-208	ENST00000485591	ATP10B	O94823	1461 aa		31.83	■■■□□ 2.69
COL6A2-208	ENST00000485591	LRRIQ1	Q96JM4	1722 aa		31.83	■■■□□ 2.69
COL6A2-208	ENST00000485591	VPS8	Q8N3P4	1428 aa		31.77	■■■□□ 2.68
COL6A2-208	ENST00000485591	EPRS	P07814	1512 aa	Known RBP	31.77	■■■□□ 2.68
COL6A2-208	ENST00000485591	ASXL2	Q76L83	1435 aa		31.75	■■■□□ 2.67
COL6A2-208	ENST00000485591	CDK13	Q14004	1512 aa	Known RBP	31.75	■■■□□ 2.67
COL6A2-208	ENST00000485591	ARID3C	A6NKF2	412 aa		31.73	■■■□□ 2.67
COL6A2-208	ENST00000485591	CCDC18	Q5T9S5	1454 aa		31.72	■■■□□ 2.67
COL6A2-208	ENST00000485591	ATP1B4	Q9UN42	357 aa	Predicted RBP	31.7	■■■□□ 2.67
COL6A2-208	ENST00000485591	WDR7	Q9Y4E6	1490 aa		31.7	■■■□□ 2.66
COL6A2-208	ENST00000485591	KIF13A	Q9H1H9	1805 aa		31.68	■■■□□ 2.66
COL6A2-208	ENST00000485591	DIP2B	Q9P265	1576 aa		31.68	■■■□□ 2.66
COL6A2-208	ENST00000485591	ABCC10	Q5T3U5	1492 aa		31.65	■■■□□ 2.66
COL6A2-208	ENST00000485591	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	31.64	■■■□□ 2.66
COL6A2-208	ENST00000485591	HNRNPUL2	Q1KMD3	747 aa	Known RBP	31.64	■■■□□ 2.66
COL6A2-208	ENST00000485591	CFAP43	Q8NDM7	1665 aa		31.6	■■■□□ 2.65
COL6A2-208	ENST00000485591	GLI2	P10070	1586 aa		31.59	■■■□□ 2.65
COL6A2-208	ENST00000485591	PLEKHD1	A6NEE1	506 aa		31.53	■■■□□ 2.64
COL6A2-208	ENST00000485591	TRH	P20396	242 aa	Predicted RBP	31.53	■■■□□ 2.64
COL6A2-208	ENST00000485591	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.52	■■■□□ 2.64
COL6A2-208	ENST00000485591	TIAM1	Q13009	1591 aa		31.51	■■■□□ 2.64
COL6A2-208	ENST00000485591	MAGI3	Q5TCQ9	1506 aa		31.49	■■■□□ 2.63
COL6A2-208	ENST00000485591	MAP3K4	Q9Y6R4	1608 aa		31.49	■■■□□ 2.63
COL6A2-208	ENST00000485591	TRO	Q12816	1431 aa	Predicted RBP	31.49	■■■□□ 2.63
COL6A2-208	ENST00000485591	FAM69C	Q0P6D2	419 aa		31.48	■■■□□ 2.63
COL6A2-208	ENST00000485591	MAP3K1	Q13233	1512 aa		31.48	■■■□□ 2.63
COL6A2-208	ENST00000485591	ABCA9	Q8IUA7	1624 aa		31.47	■■■□□ 2.63
COL6A2-208	ENST00000485591	KIF14	Q15058	1648 aa		31.45	■■■□□ 2.62
COL6A2-208	ENST00000485591	KCNH8	Q96L42	1107 aa		31.44	■■■□□ 2.62
COL6A2-208	ENST00000485591	EHBP1L1	Q8N3D4	1523 aa		31.41	■■■□□ 2.62
COL6A2-208	ENST00000485591	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.39	■■■□□ 2.62
COL6A2-208	ENST00000485591	TSPOAP1	O95153	1857 aa		31.39	■■■□□ 2.62
COL6A2-208	ENST00000485591	TTC37	Q6PGP7	1564 aa		31.38	■■■□□ 2.61
COL6A2-208	ENST00000485591	PPRC1	Q5VV67	1664 aa	Known RBP	31.37	■■■□□ 2.61
COL6A2-208	ENST00000485591	MTUS2	Q5JR59	1369 aa		31.36	■■■□□ 2.61
COL6A2-208	ENST00000485591	LRRC9	Q6ZRR7	1453 aa		31.33	■■■□□ 2.61
COL6A2-208	ENST00000485591	CD109	Q6YHK3	1445 aa		31.32	■■■□□ 2.6
COL6A2-208	ENST00000485591	MYO5C	Q9NQX4	1742 aa		31.3	■■■□□ 2.6
COL6A2-208	ENST00000485591	APLP2	Q06481	763 aa		31.3	■■■□□ 2.6
COL6A2-208	ENST00000485591	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.29	■■■□□ 2.6
COL6A2-208	ENST00000485591	TEX14	Q8IWB6	1497 aa		31.25	■■■□□ 2.59
COL6A2-208	ENST00000485591	CDC42BPA	Q5VT25	1732 aa		31.22	■■■□□ 2.59
COL6A2-208	ENST00000485591	PREX2	Q70Z35	1606 aa		31.21	■■■□□ 2.59
COL6A2-208	ENST00000485591	ARAP3	Q8WWN8	1544 aa		31.21	■■■□□ 2.59
COL6A2-208	ENST00000485591	KANK4	Q5T7N3	995 aa	Predicted RBP	31.2	■■■□□ 2.59
COL6A2-208	ENST00000485591	CFAP74	Q9C0B2	1584 aa		31.18	■■■□□ 2.58
COL6A2-208	ENST00000485591	CDC42BPB	Q9Y5S2	1711 aa		31.18	■■■□□ 2.58
COL6A2-208	ENST00000485591	PLCH2	O75038	1416 aa		31.17	■■■□□ 2.58
COL6A2-208	ENST00000485591	NCOA2	Q15596	1464 aa		31.17	■■■□□ 2.58
COL6A2-208	ENST00000485591	ITSN2	Q9NZM3	1697 aa		31.16	■■■□□ 2.58
COL6A2-208	ENST00000485591	NEO1	Q92859	1461 aa		31.12	■■■□□ 2.57
COL6A2-208	ENST00000485591	FANCA	O15360	1455 aa		31.11	■■■□□ 2.57

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms