RNA–Protein interactions for RNA: ENST00000485275.2

LRIF1-202, Transcript of ligand dependent nuclear receptor interacting factor 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LRIF1, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1-202ENST00000485275 CHMP7Q8WUX9 453 aaPredicted RBP23.44■■□□□ 1.34
LRIF1-202ENST00000485275 FBLN2P98095 1184 aa23.42■■□□□ 1.34
LRIF1-202ENST00000485275 NUP160Q12769 1436 aa23.41■■□□□ 1.34
LRIF1-202ENST00000485275 CLIP1P30622 1438 aa23.39■■□□□ 1.34
LRIF1-202ENST00000485275 IQGAP2Q13576 1575 aa23.38■■□□□ 1.33
LRIF1-202ENST00000485275 RANGAP1P46060 587 aaPredicted RBP23.37■■□□□ 1.33
LRIF1-202ENST00000485275 ARHGAP35Q9NRY4 1499 aa23.34■■□□□ 1.33
LRIF1-202ENST00000485275 KIAA0586Q9BVV6 1533 aa23.34■■□□□ 1.33
LRIF1-202ENST00000485275 ARAP1Q96P48 1450 aa23.3■■□□□ 1.32
LRIF1-202ENST00000485275 SAMD9Q5K651 1589 aa23.29■■□□□ 1.32
LRIF1-202ENST00000485275 UGGT2Q9NYU1 1516 aa23.26■■□□□ 1.31
LRIF1-202ENST00000485275 EFCAB5A4FU69 1503 aa23.25■■□□□ 1.31
LRIF1-202ENST00000485275 CLASP1Q7Z460 1538 aa23.24■■□□□ 1.31
LRIF1-202ENST00000485275 DISP1Q96F81 1524 aa23.19■■□□□ 1.3
LRIF1-202ENST00000485275 FHOD3Q2V2M9 1422 aa23.19■■□□□ 1.3
LRIF1-202ENST00000485275 SHROOM2Q13796 1616 aa23.18■■□□□ 1.3
LRIF1-202ENST00000485275 KIAA0556O60303 1618 aa23.18■■□□□ 1.3
LRIF1-202ENST00000485275 P3H3Q8IVL6 736 aa23.15■■□□□ 1.3
LRIF1-202ENST00000485275 VPS8Q8N3P4 1428 aa23.15■■□□□ 1.3
LRIF1-202ENST00000485275 JPH4Q96JJ6 628 aa23.12■■□□□ 1.29
LRIF1-202ENST00000485275 ERCC6L2Q5T890 1561 aa23.09■■□□□ 1.29
LRIF1-202ENST00000485275 PCF11O94913 1555 aaKnown RBP23.06■■□□□ 1.28
LRIF1-202ENST00000485275 PRG4Q92954 1404 aaPredicted RBP23.05■■□□□ 1.28
LRIF1-202ENST00000485275 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
LRIF1-202ENST00000485275 CARMIL2Q6F5E8 1435 aa22.99■■□□□ 1.27
LRIF1-202ENST00000485275 FMN1Q68DA7 1419 aa22.98■■□□□ 1.27
LRIF1-202ENST00000485275 LRRIQ1Q96JM4 1722 aa22.96■■□□□ 1.27
LRIF1-202ENST00000485275 CASKIN1Q8WXD9 1431 aa22.94■■□□□ 1.26
LRIF1-202ENST00000485275 FYCO1Q9BQS8 1478 aa22.94■■□□□ 1.26
LRIF1-202ENST00000485275 TTBK1Q5TCY1 1321 aaPredicted RBP22.9■■□□□ 1.26
LRIF1-202ENST00000485275 PLB1Q6P1J6 1458 aa22.89■■□□□ 1.25
LRIF1-202ENST00000485275 RAPGEF6Q8TEU7 1601 aa22.88■■□□□ 1.25
LRIF1-202ENST00000485275 CFAP43Q8NDM7 1665 aa22.87■■□□□ 1.25
LRIF1-202ENST00000485275 ABCA8O94911 1581 aa22.86■■□□□ 1.25
LRIF1-202ENST00000485275 HECW1Q76N89 1606 aa22.85■■□□□ 1.25
LRIF1-202ENST00000485275 PPARGC1BQ86YN6 1023 aaKnown RBP22.85■■□□□ 1.25
LRIF1-202ENST00000485275 TIAM1Q13009 1591 aa22.85■■□□□ 1.25
LRIF1-202ENST00000485275 NUP153P49790 1475 aaKnown RBP22.83■■□□□ 1.25
LRIF1-202ENST00000485275 PTPRGP23470 1445 aa22.83■■□□□ 1.25
LRIF1-202ENST00000485275 MAP3K1Q13233 1512 aa22.8■■□□□ 1.24
LRIF1-202ENST00000485275 CDK13Q14004 1512 aaKnown RBP22.79■■□□□ 1.24
LRIF1-202ENST00000485275 ARHGEF11O15085 1522 aa22.78■■□□□ 1.24
LRIF1-202ENST00000485275 EPRSP07814 1512 aaKnown RBP22.78■■□□□ 1.24
LRIF1-202ENST00000485275 ATP1B4Q9UN42 357 aaPredicted RBP22.78■■□□□ 1.24
LRIF1-202ENST00000485275 KANK4Q5T7N3 995 aaPredicted RBP22.76■■□□□ 1.23
LRIF1-202ENST00000485275 CCDC18Q5T9S5 1454 aa22.73■■□□□ 1.23
LRIF1-202ENST00000485275 MAGI3Q5TCQ9 1506 aa22.73■■□□□ 1.23
LRIF1-202ENST00000485275 UACAQ9BZF9 1416 aa22.73■■□□□ 1.23
LRIF1-202ENST00000485275 ARID3CA6NKF2 412 aa22.72■■□□□ 1.23
LRIF1-202ENST00000485275 RIMBP3CA6NJZ7 1639 aa22.71■■□□□ 1.23
LRIF1-202ENST00000485275 RIMBP3BA6NNM3 1639 aa22.71■■□□□ 1.23
LRIF1-202ENST00000485275 LRRC9Q6ZRR7 1453 aa22.71■■□□□ 1.23
LRIF1-202ENST00000485275 ABCC2Q92887 1545 aa22.71■■□□□ 1.23
LRIF1-202ENST00000485275 RIMBP3Q9UFD9 1639 aa22.71■■□□□ 1.23
LRIF1-202ENST00000485275 APLP2Q06481 763 aa22.71■■□□□ 1.23
LRIF1-202ENST00000485275 ADCY10Q96PN6 1610 aa22.68■■□□□ 1.22
LRIF1-202ENST00000485275 UHRF1BP1LA0JNW5 1464 aa22.66■■□□□ 1.22
LRIF1-202ENST00000485275 ATP10BO94823 1461 aa22.66■■□□□ 1.22
LRIF1-202ENST00000485275 EHBP1L1Q8N3D4 1523 aa22.61■■□□□ 1.21
LRIF1-202ENST00000485275 ZCCHC11Q5TAX3 1644 aaKnown RBP22.6■■□□□ 1.21
LRIF1-202ENST00000485275 KDM5BQ9UGL1 1544 aa22.58■■□□□ 1.21
LRIF1-202ENST00000485275 MTUS2Q5JR59 1369 aa22.57■■□□□ 1.2
LRIF1-202ENST00000485275 SUPT6HQ7KZ85 1726 aaKnown RBP22.53■■□□□ 1.2
LRIF1-202ENST00000485275 KIF14Q15058 1648 aa22.52■■□□□ 1.2
LRIF1-202ENST00000485275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.52■■□□□ 1.2
LRIF1-202ENST00000485275 HNRNPUL2Q1KMD3 747 aaKnown RBP22.52■■□□□ 1.2
LRIF1-202ENST00000485275 NCOA2Q15596 1464 aa22.51■■□□□ 1.19
LRIF1-202ENST00000485275 TROQ12816 1431 aaPredicted RBP22.51■■□□□ 1.19
LRIF1-202ENST00000485275 PHLDB1Q86UU1 1377 aa22.51■■□□□ 1.19
LRIF1-202ENST00000485275 CYB5RLQ6IPT4 315 aa22.45■■□□□ 1.19
LRIF1-202ENST00000485275 TRIM26Q12899 539 aaPredicted RBP22.45■■□□□ 1.18
LRIF1-202ENST00000485275 CDK11AQ9UQ88 783 aaPredicted RBP22.43■■□□□ 1.18
LRIF1-202ENST00000485275 RRBP1Q9P2E9 1410 aaKnown RBP22.4■■□□□ 1.18
LRIF1-202ENST00000485275 PLEKHD1A6NEE1 506 aa22.4■■□□□ 1.18
LRIF1-202ENST00000485275 ABCC10Q5T3U5 1492 aa22.4■■□□□ 1.18
LRIF1-202ENST00000485275 PCGF6Q9BYE7 350 aa22.38■■□□□ 1.17
LRIF1-202ENST00000485275 MYOM3Q5VTT5 1437 aa22.37■■□□□ 1.17
LRIF1-202ENST00000485275 TTC37Q6PGP7 1564 aa22.37■■□□□ 1.17
LRIF1-202ENST00000485275 WDR7Q9Y4E6 1490 aa22.37■■□□□ 1.17
LRIF1-202ENST00000485275 ASXL2Q76L83 1435 aa22.36■■□□□ 1.17
LRIF1-202ENST00000485275 CDC42BPAQ5VT25 1732 aa22.35■■□□□ 1.17
LRIF1-202ENST00000485275 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.35■■□□□ 1.176e-6■■■■■ 38.2
LRIF1-202ENST00000485275 FGD6Q6ZV73 1430 aa22.34■■□□□ 1.17
LRIF1-202ENST00000485275 CCNB3Q8WWL7 1395 aa22.32■■□□□ 1.16
LRIF1-202ENST00000485275 MAPKBP1O60336 1514 aa22.31■■□□□ 1.16
LRIF1-202ENST00000485275 GPATCH8Q9UKJ3 1502 aaKnown RBP22.31■■□□□ 1.16
LRIF1-202ENST00000485275 ITSN2Q9NZM3 1697 aa22.31■■□□□ 1.16
LRIF1-202ENST00000485275 PTPN23Q9H3S7 1636 aa22.28■■□□□ 1.16
LRIF1-202ENST00000485275 PREX2Q70Z35 1606 aa22.27■■□□□ 1.16
LRIF1-202ENST00000485275 CDC42BPBQ9Y5S2 1711 aa22.27■■□□□ 1.16
LRIF1-202ENST00000485275 NPM1P06748 294 aaKnown RBP eCLIP22.26■■□□□ 1.15
LRIF1-202ENST00000485275 KCNH8Q96L42 1107 aa22.26■■□□□ 1.15
LRIF1-202ENST00000485275 MYO5CQ9NQX4 1742 aa22.25■■□□□ 1.15
LRIF1-202ENST00000485275 ABCA9Q8IUA7 1624 aa22.25■■□□□ 1.15
LRIF1-202ENST00000485275 MIA2Q96PC5 1412 aa22.24■■□□□ 1.15
LRIF1-202ENST00000485275 TCOF1Q13428 1488 aaKnown RBP22.24■■□□□ 1.15
LRIF1-202ENST00000485275 DNAJC5Q9H3Z4 198 aa22.23■■□□□ 1.15
LRIF1-202ENST00000485275 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.19■■□□□ 1.14
LRIF1-202ENST00000485275 FAM50AQ14320 339 aaKnown RBP22.18■■□□□ 1.14
LRIF1-202ENST00000485275 ZNF644Q9H582 1327 aaPredicted RBP22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms