RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SHROOM2Q13796 1616 aa26.78■■□□□ 1.88
UPF3A-208ENST00000484246 RAPGEF2Q9Y4G8 1499 aa26.77■■□□□ 1.88
UPF3A-208ENST00000484246 KIAA0586Q9BVV6 1533 aa26.76■■□□□ 1.87
UPF3A-208ENST00000484246 PRXQ9BXM0 1461 aa26.75■■□□□ 1.87
UPF3A-208ENST00000484246 ARAP1Q96P48 1450 aa26.74■■□□□ 1.87
UPF3A-208ENST00000484246 SENP3Q9H4L4 574 aaPredicted RBP26.68■■□□□ 1.86
UPF3A-208ENST00000484246 CSRNP3Q8WYN3 585 aa26.64■■□□□ 1.86
UPF3A-208ENST00000484246 JPH4Q96JJ6 628 aa26.64■■□□□ 1.86
UPF3A-208ENST00000484246 ERCC6L2Q5T890 1561 aa26.61■■□□□ 1.85
UPF3A-208ENST00000484246 PRG4Q92954 1404 aaPredicted RBP26.6■■□□□ 1.85
UPF3A-208ENST00000484246 IQGAP2Q13576 1575 aa26.58■■□□□ 1.85
UPF3A-208ENST00000484246 CYB5RLQ6IPT4 315 aa26.57■■□□□ 1.84
UPF3A-208ENST00000484246 UGGT2Q9NYU1 1516 aa26.49■■□□□ 1.83
UPF3A-208ENST00000484246 KIF21BO75037 1637 aa26.47■■□□□ 1.83
UPF3A-208ENST00000484246 CARMIL2Q6F5E8 1435 aa26.43■■□□□ 1.82
UPF3A-208ENST00000484246 CTTNBP2Q8WZ74 1663 aa26.43■■□□□ 1.82
UPF3A-208ENST00000484246 DISP1Q96F81 1524 aa26.41■■□□□ 1.82
UPF3A-208ENST00000484246 FAM9AQ8IZU1 332 aaPredicted RBP26.4■■□□□ 1.82
UPF3A-208ENST00000484246 TNIKQ9UKE5 1360 aa26.35■■□□□ 1.81
UPF3A-208ENST00000484246 KIAA0556O60303 1618 aa26.33■■□□□ 1.81
UPF3A-208ENST00000484246 GOLGA3Q08378 1498 aa26.32■■□□□ 1.8
UPF3A-208ENST00000484246 PTPRGP23470 1445 aa26.31■■□□□ 1.8
UPF3A-208ENST00000484246 SAMD9Q5K651 1589 aa26.2■■□□□ 1.79
UPF3A-208ENST00000484246 UHRF1BP1LA0JNW5 1464 aa26.2■■□□□ 1.78
UPF3A-208ENST00000484246 ADCY10Q96PN6 1610 aa26.2■■□□□ 1.78
UPF3A-208ENST00000484246 UACAQ9BZF9 1416 aa26.15■■□□□ 1.78
UPF3A-208ENST00000484246 ABCC2Q92887 1545 aa26.14■■□□□ 1.77
UPF3A-208ENST00000484246 EFCAB5A4FU69 1503 aa26.13■■□□□ 1.77
UPF3A-208ENST00000484246 MAPKBP1O60336 1514 aa26.1■■□□□ 1.77
UPF3A-208ENST00000484246 UBTFP17480 764 aaKnown RBP26.08■■□□□ 1.77
UPF3A-208ENST00000484246 TRHP20396 242 aaPredicted RBP26.08■■□□□ 1.77
UPF3A-208ENST00000484246 ABCA8O94911 1581 aa26.07■■□□□ 1.76
UPF3A-208ENST00000484246 PLB1Q6P1J6 1458 aa26.04■■□□□ 1.76
UPF3A-208ENST00000484246 KDM5BQ9UGL1 1544 aa26.04■■□□□ 1.76
UPF3A-208ENST00000484246 NPM1P06748 294 aaKnown RBP eCLIP26.04■■□□□ 1.76
UPF3A-208ENST00000484246 TTBK1Q5TCY1 1321 aaPredicted RBP26.03■■□□□ 1.76
UPF3A-208ENST00000484246 FHOD3Q2V2M9 1422 aa25.98■■□□□ 1.75
UPF3A-208ENST00000484246 P3H3Q8IVL6 736 aa25.96■■□□□ 1.75
UPF3A-208ENST00000484246 ARHGAP35Q9NRY4 1499 aa25.96■■□□□ 1.75
UPF3A-208ENST00000484246 EHMT2Q96KQ7 1210 aa25.95■■□□□ 1.74
UPF3A-208ENST00000484246 ABCC10Q5T3U5 1492 aa25.94■■□□□ 1.74
UPF3A-208ENST00000484246 ASXL2Q76L83 1435 aa25.9■■□□□ 1.74
UPF3A-208ENST00000484246 ZCCHC11Q5TAX3 1644 aaKnown RBP25.9■■□□□ 1.74
UPF3A-208ENST00000484246 RANGAP1P46060 587 aaPredicted RBP25.89■■□□□ 1.74
UPF3A-208ENST00000484246 DIP2BQ9P265 1576 aa25.88■■□□□ 1.73
UPF3A-208ENST00000484246 RAPGEF6Q8TEU7 1601 aa25.88■■□□□ 1.73
UPF3A-208ENST00000484246 FMN1Q68DA7 1419 aa25.86■■□□□ 1.73
UPF3A-208ENST00000484246 NUP153P49790 1475 aaKnown RBP25.84■■□□□ 1.73
UPF3A-208ENST00000484246 ATP10BO94823 1461 aa25.82■■□□□ 1.72
UPF3A-208ENST00000484246 WDR7Q9Y4E6 1490 aa25.81■■□□□ 1.72
UPF3A-208ENST00000484246 KIF13AQ9H1H9 1805 aa25.8■■□□□ 1.72
UPF3A-208ENST00000484246 GLI2P10070 1586 aa25.8■■□□□ 1.72
UPF3A-208ENST00000484246 CLIP1P30622 1438 aa25.8■■□□□ 1.72
UPF3A-208ENST00000484246 FAM69CQ0P6D2 419 aa25.77■■□□□ 1.72
UPF3A-208ENST00000484246 EPRSP07814 1512 aaKnown RBP25.77■■□□□ 1.72
UPF3A-208ENST00000484246 CEP162Q5TB80 1403 aa25.71■■□□□ 1.71
UPF3A-208ENST00000484246 HECW1Q76N89 1606 aa25.7■■□□□ 1.7
UPF3A-208ENST00000484246 CASKIN1Q8WXD9 1431 aa25.66■■□□□ 1.7
UPF3A-208ENST00000484246 ARID3CA6NKF2 412 aa25.63■■□□□ 1.69
UPF3A-208ENST00000484246 MAP3K4Q9Y6R4 1608 aa25.63■■□□□ 1.69
UPF3A-208ENST00000484246 LOC105371045A0A1W2PR82 267 aa25.62■■□□□ 1.69
UPF3A-208ENST00000484246 PCF11O94913 1555 aaKnown RBP25.61■■□□□ 1.69
UPF3A-208ENST00000484246 FYCO1Q9BQS8 1478 aa25.61■■□□□ 1.69
UPF3A-208ENST00000484246 CDK13Q14004 1512 aaKnown RBP25.6■■□□□ 1.69
UPF3A-208ENST00000484246 CCDC18Q5T9S5 1454 aa25.56■■□□□ 1.68
UPF3A-208ENST00000484246 MAGI3Q5TCQ9 1506 aa25.55■■□□□ 1.68
UPF3A-208ENST00000484246 PPRC1Q5VV67 1664 aaKnown RBP25.55■■□□□ 1.68
UPF3A-208ENST00000484246 CFAP43Q8NDM7 1665 aa25.55■■□□□ 1.68
UPF3A-208ENST00000484246 PLEKHD1A6NEE1 506 aa25.54■■□□□ 1.68
UPF3A-208ENST00000484246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.54■■□□□ 1.68
UPF3A-208ENST00000484246 HNRNPUL2Q1KMD3 747 aaKnown RBP25.54■■□□□ 1.68
UPF3A-208ENST00000484246 ABCA9Q8IUA7 1624 aa25.54■■□□□ 1.68
UPF3A-208ENST00000484246 TEX14Q8IWB6 1497 aa25.53■■□□□ 1.68
UPF3A-208ENST00000484246 CD109Q6YHK3 1445 aa25.52■■□□□ 1.68
UPF3A-208ENST00000484246 KCNH8Q96L42 1107 aa25.51■■□□□ 1.67
UPF3A-208ENST00000484246 CDK11AQ9UQ88 783 aaPredicted RBP25.48■■□□□ 1.67
UPF3A-208ENST00000484246 TROQ12816 1431 aaPredicted RBP25.47■■□□□ 1.67
UPF3A-208ENST00000484246 ATP1B4Q9UN42 357 aaPredicted RBP25.46■■□□□ 1.67
UPF3A-208ENST00000484246 LRRIQ1Q96JM4 1722 aa25.46■■□□□ 1.67
UPF3A-208ENST00000484246 VPS8Q8N3P4 1428 aa25.43■■□□□ 1.66
UPF3A-208ENST00000484246 TSPOAP1O95153 1857 aa25.43■■□□□ 1.66
UPF3A-208ENST00000484246 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.42■■□□□ 1.66
UPF3A-208ENST00000484246 KDM6BO15054 1643 aa25.4■■□□□ 1.66
UPF3A-208ENST00000484246 PHLDB1Q86UU1 1377 aa25.38■■□□□ 1.65
UPF3A-208ENST00000484246 TTC37Q6PGP7 1564 aa25.37■■□□□ 1.65
UPF3A-208ENST00000484246 KIF14Q15058 1648 aa25.37■■□□□ 1.65
UPF3A-208ENST00000484246 NEO1Q92859 1461 aa25.36■■□□□ 1.65
UPF3A-208ENST00000484246 COL17A1Q9UMD9 1497 aaPredicted RBP25.34■■□□□ 1.65
UPF3A-208ENST00000484246 ARAP3Q8WWN8 1544 aa25.33■■□□□ 1.65
UPF3A-208ENST00000484246 PLCH2O75038 1416 aa25.3■■□□□ 1.64
UPF3A-208ENST00000484246 CFAP74Q9C0B2 1584 aa25.27■■□□□ 1.64
UPF3A-208ENST00000484246 FANCAO15360 1455 aa25.26■■□□□ 1.63
UPF3A-208ENST00000484246 MAP3K1Q13233 1512 aa25.26■■□□□ 1.63
UPF3A-208ENST00000484246 EHBP1L1Q8N3D4 1523 aa25.25■■□□□ 1.63
UPF3A-208ENST00000484246 TIAM1Q13009 1591 aa25.23■■□□□ 1.63
UPF3A-208ENST00000484246 MTUS2Q5JR59 1369 aa25.23■■□□□ 1.63
UPF3A-208ENST00000484246 AKNAQ7Z591 1439 aa25.2■■□□□ 1.63
UPF3A-208ENST00000484246 MYO5CQ9NQX4 1742 aa25.2■■□□□ 1.62
UPF3A-208ENST00000484246 PREX2Q70Z35 1606 aa25.16■■□□□ 1.62
UPF3A-208ENST00000484246 EFCAB2Q5VUJ9 269 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms