RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
USP4-210ENST00000483212 SYNJ2O15056 1496 aa13.42□□□□□ -0.26
USP4-210ENST00000483212 GRIN2AQ12879 1464 aa13.39□□□□□ -0.27
USP4-210ENST00000483212 UBTFP17480 764 aaKnown RBP13.36□□□□□ -0.27
USP4-210ENST00000483212 CTTNBP2Q8WZ74 1663 aa13.34□□□□□ -0.27
USP4-210ENST00000483212 CEP162Q5TB80 1403 aa13.34□□□□□ -0.27
USP4-210ENST00000483212 CEP170Q5SW79 1584 aa13.33□□□□□ -0.28
USP4-210ENST00000483212 NUP160Q12769 1436 aa13.33□□□□□ -0.28
USP4-210ENST00000483212 CHD1O14646 1710 aa13.33□□□□□ -0.28
USP4-210ENST00000483212 CHMP7Q8WUX9 453 aaPredicted RBP13.31□□□□□ -0.28
USP4-210ENST00000483212 KIAA0586Q9BVV6 1533 aa13.29□□□□□ -0.28
USP4-210ENST00000483212 CLIP1P30622 1438 aa13.28□□□□□ -0.28
USP4-210ENST00000483212 IQGAP2Q13576 1575 aa13.28□□□□□ -0.28
USP4-210ENST00000483212 FBLN2P98095 1184 aa13.26□□□□□ -0.29
USP4-210ENST00000483212 ARHGAP35Q9NRY4 1499 aa13.25□□□□□ -0.29
USP4-210ENST00000483212 SAMD9Q5K651 1589 aa13.24□□□□□ -0.29
USP4-210ENST00000483212 UGGT2Q9NYU1 1516 aa13.24□□□□□ -0.29
USP4-210ENST00000483212 EFCAB5A4FU69 1503 aa13.23□□□□□ -0.29
USP4-210ENST00000483212 CLASP1Q7Z460 1538 aa13.23□□□□□ -0.29
USP4-210ENST00000483212 ARAP1Q96P48 1450 aa13.23□□□□□ -0.29
USP4-210ENST00000483212 PLPPR3Q6T4P5 718 aa13.2□□□□□ -0.3
USP4-210ENST00000483212 SHROOM2Q13796 1616 aa13.2□□□□□ -0.3
USP4-210ENST00000483212 DISP1Q96F81 1524 aa13.18□□□□□ -0.3
USP4-210ENST00000483212 RANGAP1P46060 587 aaPredicted RBP13.18□□□□□ -0.3
USP4-210ENST00000483212 PPP6R1Q9UPN7 881 aa13.17□□□□□ -0.3
USP4-210ENST00000483212 KIAA0556O60303 1618 aa13.17□□□□□ -0.3
USP4-210ENST00000483212 FHOD3Q2V2M9 1422 aa13.15□□□□□ -0.3
USP4-210ENST00000483212 VPS8Q8N3P4 1428 aa13.15□□□□□ -0.3
USP4-210ENST00000483212 JPH4Q96JJ6 628 aa13.14□□□□□ -0.31
USP4-210ENST00000483212 ADRA2BP18089 450 aa13.1□□□□□ -0.31
USP4-210ENST00000483212 P3H3Q8IVL6 736 aa13.1□□□□□ -0.31
USP4-210ENST00000483212 PRG4Q92954 1404 aaPredicted RBP13.1□□□□□ -0.31
USP4-210ENST00000483212 ERCC6L2Q5T890 1561 aa13.1□□□□□ -0.31
USP4-210ENST00000483212 OSCARQ8IYS5 282 aa13.09□□□□□ -0.31
USP4-210ENST00000483212 CARMIL2Q6F5E8 1435 aa13.08□□□□□ -0.32
USP4-210ENST00000483212 PCF11O94913 1555 aaKnown RBP13.07□□□□□ -0.32
USP4-210ENST00000483212 FMN1Q68DA7 1419 aa13.07□□□□□ -0.32
USP4-210ENST00000483212 CASKIN1Q8WXD9 1431 aa13.05□□□□□ -0.32
USP4-210ENST00000483212 FYCO1Q9BQS8 1478 aa13.04□□□□□ -0.32
USP4-210ENST00000483212 POTEHQ6S545 545 aa13.04□□□□□ -0.32
USP4-210ENST00000483212 ABCA8O94911 1581 aa13.01□□□□□ -0.33
USP4-210ENST00000483212 RAPGEF6Q8TEU7 1601 aa12.99□□□□□ -0.33
USP4-210ENST00000483212 MAP3K1Q13233 1512 aa12.99□□□□□ -0.33
USP4-210ENST00000483212 PLB1Q6P1J6 1458 aa12.99□□□□□ -0.33
USP4-210ENST00000483212 LRRIQ1Q96JM4 1722 aa12.99□□□□□ -0.33
USP4-210ENST00000483212 PTPRGP23470 1445 aa12.98□□□□□ -0.33
USP4-210ENST00000483212 HECW1Q76N89 1606 aa12.98□□□□□ -0.33
USP4-210ENST00000483212 CFAP43Q8NDM7 1665 aa12.97□□□□□ -0.33
USP4-210ENST00000483212 TIAM1Q13009 1591 aa12.97□□□□□ -0.33
USP4-210ENST00000483212 NUP153P49790 1475 aaKnown RBP12.97□□□□□ -0.33
USP4-210ENST00000483212 ARHGEF11O15085 1522 aa12.95□□□□□ -0.34
USP4-210ENST00000483212 EPRSP07814 1512 aaKnown RBP12.94□□□□□ -0.34
USP4-210ENST00000483212 UACAQ9BZF9 1416 aa12.93□□□□□ -0.34
USP4-210ENST00000483212 TTBK1Q5TCY1 1321 aaPredicted RBP12.92□□□□□ -0.34
USP4-210ENST00000483212 UHRF1BP1LA0JNW5 1464 aa12.92□□□□□ -0.34
USP4-210ENST00000483212 CCDC18Q5T9S5 1454 aa12.92□□□□□ -0.34
USP4-210ENST00000483212 ABCC2Q92887 1545 aa12.92□□□□□ -0.34
USP4-210ENST00000483212 CDK13Q14004 1512 aaKnown RBP12.91□□□□□ -0.34
USP4-210ENST00000483212 LRRC9Q6ZRR7 1453 aa12.91□□□□□ -0.34
USP4-210ENST00000483212 MAGI3Q5TCQ9 1506 aa12.9□□□□□ -0.34
USP4-210ENST00000483212 KANK4Q5T7N3 995 aaPredicted RBP12.9□□□□□ -0.34
USP4-210ENST00000483212 RIMBP3CA6NJZ7 1639 aa12.9□□□□□ -0.34
USP4-210ENST00000483212 RIMBP3BA6NNM3 1639 aa12.9□□□□□ -0.34
USP4-210ENST00000483212 RIMBP3Q9UFD9 1639 aa12.9□□□□□ -0.34
USP4-210ENST00000483212 ATP10BO94823 1461 aa12.89□□□□□ -0.35
USP4-210ENST00000483212 ADCY10Q96PN6 1610 aa12.88□□□□□ -0.35
USP4-210ENST00000483212 APLP2Q06481 763 aa12.87□□□□□ -0.35
USP4-210ENST00000483212 PPARGC1BQ86YN6 1023 aaKnown RBP12.87□□□□□ -0.35
USP4-210ENST00000483212 ATP1B4Q9UN42 357 aaPredicted RBP12.87□□□□□ -0.35
USP4-210ENST00000483212 KDM5BQ9UGL1 1544 aa12.86□□□□□ -0.35
USP4-210ENST00000483212 EHBP1L1Q8N3D4 1523 aa12.85□□□□□ -0.35
USP4-210ENST00000483212 ARID3CA6NKF2 412 aa12.83□□□□□ -0.36
USP4-210ENST00000483212 ZCCHC11Q5TAX3 1644 aaKnown RBP12.83□□□□□ -0.36
USP4-210ENST00000483212 MTUS2Q5JR59 1369 aa12.81□□□□□ -0.36
USP4-210ENST00000483212 TROQ12816 1431 aaPredicted RBP12.8□□□□□ -0.36
USP4-210ENST00000483212 SUPT6HQ7KZ85 1726 aaKnown RBP12.78□□□□□ -0.36
USP4-210ENST00000483212 NCOA2Q15596 1464 aa12.78□□□□□ -0.36
USP4-210ENST00000483212 PHLDB1Q86UU1 1377 aa12.77□□□□□ -0.37
USP4-210ENST00000483212 KIF14Q15058 1648 aa12.76□□□□□ -0.37
USP4-210ENST00000483212 CDK11AQ9UQ88 783 aaPredicted RBP12.75□□□□□ -0.37
USP4-210ENST00000483212 ABCC10Q5T3U5 1492 aa12.74□□□□□ -0.37
USP4-210ENST00000483212 RRBP1Q9P2E9 1410 aaKnown RBP12.74□□□□□ -0.37
USP4-210ENST00000483212 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.74□□□□□ -0.37
USP4-210ENST00000483212 HNRNPUL2Q1KMD3 747 aaKnown RBP12.74□□□□□ -0.37
USP4-210ENST00000483212 CYB5RLQ6IPT4 315 aa12.74□□□□□ -0.37
USP4-210ENST00000483212 PLEKHD1A6NEE1 506 aa12.73□□□□□ -0.37
USP4-210ENST00000483212 TRIM26Q12899 539 aaPredicted RBP12.72□□□□□ -0.37
USP4-210ENST00000483212 WDR7Q9Y4E6 1490 aa12.72□□□□□ -0.37
USP4-210ENST00000483212 MAPKBP1O60336 1514 aa12.71□□□□□ -0.38
USP4-210ENST00000483212 MYOM3Q5VTT5 1437 aa12.71□□□□□ -0.38
USP4-210ENST00000483212 ASXL2Q76L83 1435 aa12.71□□□□□ -0.38
USP4-210ENST00000483212 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP4-210ENST00000483212 FGD6Q6ZV73 1430 aa12.69□□□□□ -0.38
USP4-210ENST00000483212 TTC37Q6PGP7 1564 aa12.69□□□□□ -0.38
USP4-210ENST00000483212 GPATCH8Q9UKJ3 1502 aaKnown RBP12.68□□□□□ -0.38
USP4-210ENST00000483212 DNAJC5Q9H3Z4 198 aa12.68□□□□□ -0.38
USP4-210ENST00000483212 TCOF1Q13428 1488 aaKnown RBP12.67□□□□□ -0.38
USP4-210ENST00000483212 MIA2Q96PC5 1412 aa12.67□□□□□ -0.38
USP4-210ENST00000483212 CCNB3Q8WWL7 1395 aa12.67□□□□□ -0.38
USP4-210ENST00000483212 CDC42BPAQ5VT25 1732 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms