RNA–Protein interactions for RNA: ENST00000482462.1

PDGFA-206, Transcript of platelet derived growth factor subunit A, humanhuman

TSL 1 (best)

Gene PDGFA, Length 1,770 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFA-206ENST00000482462 CEP162Q5TB80 1403 aa29.87■■■□□ 2.37
PDGFA-206ENST00000482462 GRIN2AQ12879 1464 aa29.85■■■□□ 2.37
PDGFA-206ENST00000482462 PPARGC1BQ86YN6 1023 aaKnown RBP29.82■■■□□ 2.36
PDGFA-206ENST00000482462 ZEB1P37275 1124 aaPredicted RBP29.77■■■□□ 2.36
PDGFA-206ENST00000482462 CHMP7Q8WUX9 453 aaPredicted RBP29.77■■■□□ 2.36
PDGFA-206ENST00000482462 CLIP1P30622 1438 aa29.74■■■□□ 2.35
PDGFA-206ENST00000482462 CHD1O14646 1710 aa29.73■■■□□ 2.35
PDGFA-206ENST00000482462 FBLN2P98095 1184 aa29.69■■■□□ 2.34
PDGFA-206ENST00000482462 CEP170Q5SW79 1584 aa29.67■■■□□ 2.34
PDGFA-206ENST00000482462 IQGAP2Q13576 1575 aa29.66■■■□□ 2.34
PDGFA-206ENST00000482462 NUP160Q12769 1436 aa29.66■■■□□ 2.34
PDGFA-206ENST00000482462 OSCARQ8IYS5 282 aa29.64■■■□□ 2.34
PDGFA-206ENST00000482462 KIAA0586Q9BVV6 1533 aa29.64■■■□□ 2.33
PDGFA-206ENST00000482462 RANGAP1P46060 587 aaPredicted RBP29.6■■■□□ 2.33
PDGFA-206ENST00000482462 EFCAB5A4FU69 1503 aa29.59■■■□□ 2.33
PDGFA-206ENST00000482462 ARHGAP35Q9NRY4 1499 aa29.59■■■□□ 2.33
PDGFA-206ENST00000482462 SAMD9Q5K651 1589 aa29.53■■■□□ 2.32
PDGFA-206ENST00000482462 UGGT2Q9NYU1 1516 aa29.52■■■□□ 2.32
PDGFA-206ENST00000482462 ARAP1Q96P48 1450 aa29.51■■■□□ 2.31
PDGFA-206ENST00000482462 VPS8Q8N3P4 1428 aa29.44■■■□□ 2.3
PDGFA-206ENST00000482462 CLASP1Q7Z460 1538 aa29.39■■■□□ 2.29
PDGFA-206ENST00000482462 FHOD3Q2V2M9 1422 aa29.36■■■□□ 2.29
PDGFA-206ENST00000482462 KIAA0556O60303 1618 aa29.36■■■□□ 2.29
PDGFA-206ENST00000482462 JPH4Q96JJ6 628 aa29.35■■■□□ 2.29
PDGFA-206ENST00000482462 DISP1Q96F81 1524 aa29.35■■■□□ 2.29
PDGFA-206ENST00000482462 SHROOM2Q13796 1616 aa29.35■■■□□ 2.29
PDGFA-206ENST00000482462 P3H3Q8IVL6 736 aa29.34■■■□□ 2.29
PDGFA-206ENST00000482462 CARMIL2Q6F5E8 1435 aa29.29■■■□□ 2.28
PDGFA-206ENST00000482462 FMN1Q68DA7 1419 aa29.28■■■□□ 2.28
PDGFA-206ENST00000482462 PRG4Q92954 1404 aaPredicted RBP29.21■■■□□ 2.27
PDGFA-206ENST00000482462 PCF11O94913 1555 aaKnown RBP29.2■■■□□ 2.27
PDGFA-206ENST00000482462 FYCO1Q9BQS8 1478 aa29.16■■■□□ 2.26
PDGFA-206ENST00000482462 CASKIN1Q8WXD9 1431 aa29.16■■■□□ 2.26
PDGFA-206ENST00000482462 RIMBP3CA6NJZ7 1639 aa29.15■■■□□ 2.26
PDGFA-206ENST00000482462 RIMBP3BA6NNM3 1639 aa29.15■■■□□ 2.26
PDGFA-206ENST00000482462 RIMBP3Q9UFD9 1639 aa29.15■■■□□ 2.26
PDGFA-206ENST00000482462 ARHGEF11O15085 1522 aa29.12■■■□□ 2.25
PDGFA-206ENST00000482462 APLP2Q06481 763 aa29.09■■■□□ 2.25
PDGFA-206ENST00000482462 ERCC6L2Q5T890 1561 aa29.07■■■□□ 2.24
PDGFA-206ENST00000482462 MAP3K1Q13233 1512 aa29.06■■■□□ 2.24
PDGFA-206ENST00000482462 HECW1Q76N89 1606 aa29.05■■■□□ 2.24
PDGFA-206ENST00000482462 RAPGEF6Q8TEU7 1601 aa29.04■■■□□ 2.24
PDGFA-206ENST00000482462 CFAP43Q8NDM7 1665 aa29.03■■■□□ 2.24
PDGFA-206ENST00000482462 TIAM1Q13009 1591 aa29.02■■■□□ 2.24
PDGFA-206ENST00000482462 LRRIQ1Q96JM4 1722 aa29.01■■■□□ 2.23
PDGFA-206ENST00000482462 PTPRGP23470 1445 aa28.99■■■□□ 2.23
PDGFA-206ENST00000482462 TTBK1Q5TCY1 1321 aaPredicted RBP28.98■■■□□ 2.23
PDGFA-206ENST00000482462 ATP1B4Q9UN42 357 aaPredicted RBP28.97■■■□□ 2.23
PDGFA-206ENST00000482462 ABCA8O94911 1581 aa28.96■■■□□ 2.23
PDGFA-206ENST00000482462 CCDC18Q5T9S5 1454 aa28.95■■■□□ 2.22
PDGFA-206ENST00000482462 PLB1Q6P1J6 1458 aa28.95■■■□□ 2.22
PDGFA-206ENST00000482462 CYB5RLQ6IPT4 315 aa28.93■■■□□ 2.22
PDGFA-206ENST00000482462 NUP153P49790 1475 aaKnown RBP28.9■■■□□ 2.22
PDGFA-206ENST00000482462 EPRSP07814 1512 aaKnown RBP28.9■■■□□ 2.22
PDGFA-206ENST00000482462 LRRC9Q6ZRR7 1453 aa28.85■■■□□ 2.21
PDGFA-206ENST00000482462 UACAQ9BZF9 1416 aa28.84■■■□□ 2.21
PDGFA-206ENST00000482462 KANK4Q5T7N3 995 aaPredicted RBP28.84■■■□□ 2.21
PDGFA-206ENST00000482462 CDK13Q14004 1512 aaKnown RBP28.82■■■□□ 2.2
PDGFA-206ENST00000482462 ABCC2Q92887 1545 aa28.8■■■□□ 2.2
PDGFA-206ENST00000482462 UHRF1BP1LA0JNW5 1464 aa28.77■■■□□ 2.2
PDGFA-206ENST00000482462 EHBP1L1Q8N3D4 1523 aa28.75■■■□□ 2.19
PDGFA-206ENST00000482462 MTUS2Q5JR59 1369 aa28.73■■■□□ 2.19
PDGFA-206ENST00000482462 ATP10BO94823 1461 aa28.72■■■□□ 2.19
PDGFA-206ENST00000482462 MAGI3Q5TCQ9 1506 aa28.71■■■□□ 2.19
PDGFA-206ENST00000482462 ARID3CA6NKF2 412 aa28.7■■■□□ 2.19
PDGFA-206ENST00000482462 CCER1Q8TC90 406 aaPredicted RBP28.68■■■□□ 2.18
PDGFA-206ENST00000482462 CDK11AQ9UQ88 783 aaPredicted RBP28.67■■■□□ 2.18
PDGFA-206ENST00000482462 SUPT6HQ7KZ85 1726 aaKnown RBP28.67■■■□□ 2.18
PDGFA-206ENST00000482462 ADCY10Q96PN6 1610 aa28.66■■■□□ 2.18
PDGFA-206ENST00000482462 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.65■■■□□ 2.18
PDGFA-206ENST00000482462 HNRNPUL2Q1KMD3 747 aaKnown RBP28.65■■■□□ 2.18
PDGFA-206ENST00000482462 KDM5BQ9UGL1 1544 aa28.63■■■□□ 2.17
PDGFA-206ENST00000482462 ZCCHC11Q5TAX3 1644 aaKnown RBP28.62■■■□□ 2.17
PDGFA-206ENST00000482462 TROQ12816 1431 aaPredicted RBP28.6■■■□□ 2.17
PDGFA-206ENST00000482462 NCOA2Q15596 1464 aa28.57■■■□□ 2.16
PDGFA-206ENST00000482462 PLEKHD1A6NEE1 506 aa28.55■■■□□ 2.16
PDGFA-206ENST00000482462 PHLDB1Q86UU1 1377 aa28.52■■■□□ 2.16
PDGFA-206ENST00000482462 RRBP1Q9P2E9 1410 aaKnown RBP28.5■■■□□ 2.15
PDGFA-206ENST00000482462 KIF14Q15058 1648 aa28.49■■■□□ 2.15
PDGFA-206ENST00000482462 PELP1Q8IZL8 1130 aaKnown RBP28.48■■■□□ 2.15
PDGFA-206ENST00000482462 MYOM3Q5VTT5 1437 aa28.44■■■□□ 2.14
PDGFA-206ENST00000482462 CCNB3Q8WWL7 1395 aa28.41■■■□□ 2.14
PDGFA-206ENST00000482462 TRHP20396 242 aaPredicted RBP28.41■■■□□ 2.14
PDGFA-206ENST00000482462 SCAF1Q9H7N4 1312 aaKnown RBP28.41■■■□□ 2.14
PDGFA-206ENST00000482462 NPM1P06748 294 aaKnown RBP eCLIP28.39■■■□□ 2.14
PDGFA-206ENST00000482462 ITSN2Q9NZM3 1697 aa28.39■■■□□ 2.14
PDGFA-206ENST00000482462 FGD6Q6ZV73 1430 aa28.39■■■□□ 2.13
PDGFA-206ENST00000482462 ABCC10Q5T3U5 1492 aa28.38■■■□□ 2.13
PDGFA-206ENST00000482462 WDR7Q9Y4E6 1490 aa28.36■■■□□ 2.13
PDGFA-206ENST00000482462 MIA2Q96PC5 1412 aa28.34■■■□□ 2.13
PDGFA-206ENST00000482462 CDC42BPAQ5VT25 1732 aa28.34■■■□□ 2.13
PDGFA-206ENST00000482462 ASXL2Q76L83 1435 aa28.32■■■□□ 2.12
PDGFA-206ENST00000482462 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.32■■■□□ 2.12
PDGFA-206ENST00000482462 PTPN23Q9H3S7 1636 aa28.32■■■□□ 2.12
PDGFA-206ENST00000482462 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.3■■■□□ 2.12
PDGFA-206ENST00000482462 GPATCH8Q9UKJ3 1502 aaKnown RBP28.3■■■□□ 2.12
PDGFA-206ENST00000482462 TTC37Q6PGP7 1564 aa28.28■■■□□ 2.12
PDGFA-206ENST00000482462 MAPKBP1O60336 1514 aa28.27■■■□□ 2.12
PDGFA-206ENST00000482462 DIEXFQ68CQ4 756 aaKnown RBP28.27■■■□□ 2.12
PDGFA-206ENST00000482462 TCOF1Q13428 1488 aaKnown RBP28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms