RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 JPH4Q96JJ6 628 aa25.68■■□□□ 1.7
LIMS3-204ENST00000482065 PRG4Q92954 1404 aaPredicted RBP25.68■■□□□ 1.7
LIMS3-204ENST00000482065 CARMIL1Q5VZK9 1371 aa25.63■■□□□ 1.69
LIMS3-204ENST00000482065 KIAA0586Q9BVV6 1533 aa25.59■■□□□ 1.69
LIMS3-204ENST00000482065 RAPGEF2Q9Y4G8 1499 aa25.43■■□□□ 1.66
LIMS3-204ENST00000482065 IQGAP2Q13576 1575 aa25.41■■□□□ 1.66
LIMS3-204ENST00000482065 ADCY10Q96PN6 1610 aa25.36■■□□□ 1.65
LIMS3-204ENST00000482065 CARMIL2Q6F5E8 1435 aa25.32■■□□□ 1.64
LIMS3-204ENST00000482065 TTBK1Q5TCY1 1321 aaPredicted RBP25.32■■□□□ 1.64
LIMS3-204ENST00000482065 PTPRGP23470 1445 aa25.31■■□□□ 1.64
LIMS3-204ENST00000482065 TNIKQ9UKE5 1360 aa25.29■■□□□ 1.64
LIMS3-204ENST00000482065 NPM1P06748 294 aaKnown RBP eCLIP25.28■■□□□ 1.64
LIMS3-204ENST00000482065 DISP1Q96F81 1524 aa25.27■■□□□ 1.64
LIMS3-204ENST00000482065 KIF13AQ9H1H9 1805 aa25.27■■□□□ 1.64
LIMS3-204ENST00000482065 PRXQ9BXM0 1461 aa25.25■■□□□ 1.63
LIMS3-204ENST00000482065 UGGT2Q9NYU1 1516 aa25.25■■□□□ 1.63
LIMS3-204ENST00000482065 MAPKBP1O60336 1514 aa25.24■■□□□ 1.63
LIMS3-204ENST00000482065 CTTNBP2Q8WZ74 1663 aa25.22■■□□□ 1.63
LIMS3-204ENST00000482065 ABCC10Q5T3U5 1492 aa25.19■■□□□ 1.62
LIMS3-204ENST00000482065 KIAA0556O60303 1618 aa25.19■■□□□ 1.62
LIMS3-204ENST00000482065 FAM69CQ0P6D2 419 aa25.16■■□□□ 1.62
LIMS3-204ENST00000482065 DIP2BQ9P265 1576 aa25.15■■□□□ 1.62
LIMS3-204ENST00000482065 ABCC2Q92887 1545 aa25.13■■□□□ 1.61
LIMS3-204ENST00000482065 UACAQ9BZF9 1416 aa25.12■■□□□ 1.61
LIMS3-204ENST00000482065 UHRF1BP1LA0JNW5 1464 aa25.11■■□□□ 1.61
LIMS3-204ENST00000482065 CSRNP3Q8WYN3 585 aa25.11■■□□□ 1.61
LIMS3-204ENST00000482065 GOLGA3Q08378 1498 aa25.05■■□□□ 1.6
LIMS3-204ENST00000482065 EEA1Q15075 1411 aa25.04■■□□□ 1.6
LIMS3-204ENST00000482065 ASXL2Q76L83 1435 aa25.03■■□□□ 1.6
LIMS3-204ENST00000482065 FAM9AQ8IZU1 332 aaPredicted RBP25.01■■□□□ 1.59
LIMS3-204ENST00000482065 KDM5BQ9UGL1 1544 aa25.01■■□□□ 1.59
LIMS3-204ENST00000482065 PLB1Q6P1J6 1458 aa25■■□□□ 1.59
LIMS3-204ENST00000482065 TSPOAP1O95153 1857 aa24.98■■□□□ 1.59
LIMS3-204ENST00000482065 ZCCHC11Q5TAX3 1644 aaKnown RBP24.98■■□□□ 1.59
LIMS3-204ENST00000482065 CHIC1Q5VXU3 224 aa24.94■■□□□ 1.58
LIMS3-204ENST00000482065 ABCA8O94911 1581 aa24.93■■□□□ 1.58
LIMS3-204ENST00000482065 P3H3Q8IVL6 736 aa24.93■■□□□ 1.58
LIMS3-204ENST00000482065 GLI2P10070 1586 aa24.91■■□□□ 1.58
LIMS3-204ENST00000482065 EPRSP07814 1512 aaKnown RBP24.88■■□□□ 1.57
LIMS3-204ENST00000482065 SAMD9Q5K651 1589 aa24.88■■□□□ 1.57
LIMS3-204ENST00000482065 KDM6BO15054 1643 aa24.86■■□□□ 1.57
LIMS3-204ENST00000482065 KIF21BO75037 1637 aa24.86■■□□□ 1.57
LIMS3-204ENST00000482065 PPRC1Q5VV67 1664 aaKnown RBP24.85■■□□□ 1.57
LIMS3-204ENST00000482065 WDR7Q9Y4E6 1490 aa24.83■■□□□ 1.57
LIMS3-204ENST00000482065 RANGAP1P46060 587 aaPredicted RBP24.83■■□□□ 1.57
LIMS3-204ENST00000482065 MAP3K4Q9Y6R4 1608 aa24.8■■□□□ 1.56
LIMS3-204ENST00000482065 ARID3CA6NKF2 412 aa24.78■■□□□ 1.56
LIMS3-204ENST00000482065 EHMT2Q96KQ7 1210 aa24.76■■□□□ 1.55
LIMS3-204ENST00000482065 FHOD3Q2V2M9 1422 aa24.75■■□□□ 1.55
LIMS3-204ENST00000482065 ATP10BO94823 1461 aa24.73■■□□□ 1.55
LIMS3-204ENST00000482065 RAPGEF6Q8TEU7 1601 aa24.72■■□□□ 1.55
LIMS3-204ENST00000482065 AEBP2Q6ZN18 517 aaPredicted RBP24.72■■□□□ 1.55
LIMS3-204ENST00000482065 KCNH8Q96L42 1107 aa24.72■■□□□ 1.55
LIMS3-204ENST00000482065 TEX14Q8IWB6 1497 aa24.69■■□□□ 1.54
LIMS3-204ENST00000482065 EFCAB5A4FU69 1503 aa24.66■■□□□ 1.54
LIMS3-204ENST00000482065 COL17A1Q9UMD9 1497 aaPredicted RBP24.66■■□□□ 1.54
LIMS3-204ENST00000482065 UBTFP17480 764 aaKnown RBP24.66■■□□□ 1.54
LIMS3-204ENST00000482065 CD109Q6YHK3 1445 aa24.65■■□□□ 1.54
LIMS3-204ENST00000482065 CFAP43Q8NDM7 1665 aa24.65■■□□□ 1.54
LIMS3-204ENST00000482065 NUP153P49790 1475 aaKnown RBP24.64■■□□□ 1.53
LIMS3-204ENST00000482065 MAGI3Q5TCQ9 1506 aa24.61■■□□□ 1.53
LIMS3-204ENST00000482065 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.6■■□□□ 1.53
LIMS3-204ENST00000482065 HNRNPUL2Q1KMD3 747 aaKnown RBP24.6■■□□□ 1.53
LIMS3-204ENST00000482065 ABCA9Q8IUA7 1624 aa24.53■■□□□ 1.52
LIMS3-204ENST00000482065 ARHGAP35Q9NRY4 1499 aa24.52■■□□□ 1.52
LIMS3-204ENST00000482065 KDM4FA0A1W2PPD8 638 aa24.48■■□□□ 1.51
LIMS3-204ENST00000482065 CDK13Q14004 1512 aaKnown RBP24.45■■□□□ 1.51
LIMS3-204ENST00000482065 PLEKHD1A6NEE1 506 aa24.44■■□□□ 1.5
LIMS3-204ENST00000482065 FMN1Q68DA7 1419 aa24.44■■□□□ 1.5
LIMS3-204ENST00000482065 ATP1B4Q9UN42 357 aaPredicted RBP24.4■■□□□ 1.5
LIMS3-204ENST00000482065 ARAP3Q8WWN8 1544 aa24.4■■□□□ 1.5
LIMS3-204ENST00000482065 HECW1Q76N89 1606 aa24.39■■□□□ 1.49
LIMS3-204ENST00000482065 ADGRL1O94910 1474 aa24.37■■□□□ 1.49
LIMS3-204ENST00000482065 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.35■■□□□ 1.49
LIMS3-204ENST00000482065 NEO1Q92859 1461 aa24.35■■□□□ 1.49
LIMS3-204ENST00000482065 PHLDB1Q86UU1 1377 aa24.34■■□□□ 1.49
LIMS3-204ENST00000482065 TTC37Q6PGP7 1564 aa24.33■■□□□ 1.49
LIMS3-204ENST00000482065 RAPGEF3O95398 923 aa24.3■■□□□ 1.48
LIMS3-204ENST00000482065 LRRIQ1Q96JM4 1722 aa24.28■■□□□ 1.48
LIMS3-204ENST00000482065 PCF11O94913 1555 aaKnown RBP24.26■■□□□ 1.47
LIMS3-204ENST00000482065 FRMPD1Q5SYB0 1578 aa24.26■■□□□ 1.47
LIMS3-204ENST00000482065 FANCAO15360 1455 aa24.26■■□□□ 1.47
LIMS3-204ENST00000482065 AKNAQ7Z591 1439 aa24.24■■□□□ 1.47
LIMS3-204ENST00000482065 CLIP1P30622 1438 aa24.23■■□□□ 1.47
LIMS3-204ENST00000482065 CFAP74Q9C0B2 1584 aa24.23■■□□□ 1.47
LIMS3-204ENST00000482065 KIF14Q15058 1648 aa24.22■■□□□ 1.47
LIMS3-204ENST00000482065 CASKIN1Q8WXD9 1431 aa24.22■■□□□ 1.47
LIMS3-204ENST00000482065 CDK11AQ9UQ88 783 aaPredicted RBP24.22■■□□□ 1.47
LIMS3-204ENST00000482065 TROQ12816 1431 aaPredicted RBP24.2■■□□□ 1.46
LIMS3-204ENST00000482065 DENND4BO75064 1496 aaPredicted RBP24.19■■□□□ 1.46
LIMS3-204ENST00000482065 PLCH2O75038 1416 aa24.18■■□□□ 1.46
LIMS3-204ENST00000482065 RICTORQ6R327 1708 aa24.18■■□□□ 1.46
LIMS3-204ENST00000482065 MYO5CQ9NQX4 1742 aa24.15■■□□□ 1.46
LIMS3-204ENST00000482065 CCDC18Q5T9S5 1454 aa24.15■■□□□ 1.46
LIMS3-204ENST00000482065 FYCO1Q9BQS8 1478 aa24.13■■□□□ 1.45
LIMS3-204ENST00000482065 ARHGEF40Q8TER5 1519 aa24.1■■□□□ 1.45
LIMS3-204ENST00000482065 SCAPERQ9BY12 1400 aa24.1■■□□□ 1.45
LIMS3-204ENST00000482065 EFCAB2Q5VUJ9 269 aa24.08■■□□□ 1.45
LIMS3-204ENST00000482065 ZMYM4Q5VZL5 1548 aa24.08■■□□□ 1.45
LIMS3-204ENST00000482065 ARHGAP5Q13017 1502 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms