RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 CUL7Q14999 1698 aa22.07■■□□□ 1.12
CHD3-211ENST00000481999 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
CHD3-211ENST00000481999 HNRNPUL2Q1KMD3 747 aaKnown RBP22.05■■□□□ 1.12
CHD3-211ENST00000481999 IFT140Q96RY7 1462 aa22.04■■□□□ 1.12
CHD3-211ENST00000481999 FHOD3Q2V2M9 1422 aa22.02■■□□□ 1.12
CHD3-211ENST00000481999 ATP1B4Q9UN42 357 aaPredicted RBP22■■□□□ 1.11
CHD3-211ENST00000481999 CCER1Q8TC90 406 aaPredicted RBP21.98■■□□□ 1.11
CHD3-211ENST00000481999 CTTNBP2Q8WZ74 1663 aa21.96■■□□□ 1.11
CHD3-211ENST00000481999 PBRM1Q86U86 1689 aa21.96■■□□□ 1.11
CHD3-211ENST00000481999 PCF11O94913 1555 aaKnown RBP21.89■■□□□ 1.1
CHD3-211ENST00000481999 EIF4G3O43432 1585 aaKnown RBP21.87■■□□□ 1.09
CHD3-211ENST00000481999 GRIN2BQ13224 1484 aa21.86■■□□□ 1.09
CHD3-211ENST00000481999 ADAMTS12P58397 1594 aa21.85■■□□□ 1.09
CHD3-211ENST00000481999 FHAD1B1AJZ9 1412 aa21.84■■□□□ 1.09
CHD3-211ENST00000481999 TIAM1Q13009 1591 aa21.82■■□□□ 1.08
CHD3-211ENST00000481999 SNAPC4Q5SXM2 1469 aa21.81■■□□□ 1.08
CHD3-211ENST00000481999 EFCAB5A4FU69 1503 aa21.8■■□□□ 1.08
CHD3-211ENST00000481999 ITGAEP38570 1179 aa21.78■■□□□ 1.08
CHD3-211ENST00000481999 FBLN2P98095 1184 aa21.76■■□□□ 1.07
CHD3-211ENST00000481999 LRRC9Q6ZRR7 1453 aa21.75■■□□□ 1.07
CHD3-211ENST00000481999 SAMD9Q5K651 1589 aa21.75■■□□□ 1.07
CHD3-211ENST00000481999 ARID3CA6NKF2 412 aa21.72■■□□□ 1.07
CHD3-211ENST00000481999 PHLDB1Q86UU1 1377 aa21.72■■□□□ 1.07
CHD3-211ENST00000481999 CASKIN1Q8WXD9 1431 aa21.71■■□□□ 1.07
CHD3-211ENST00000481999 FYCO1Q9BQS8 1478 aa21.7■■□□□ 1.06
CHD3-211ENST00000481999 IQGAP2Q13576 1575 aa21.7■■□□□ 1.06
CHD3-211ENST00000481999 RRBP1Q9P2E9 1410 aaKnown RBP21.7■■□□□ 1.06
CHD3-211ENST00000481999 FMN1Q68DA7 1419 aa21.69■■□□□ 1.06
CHD3-211ENST00000481999 CCNB3Q8WWL7 1395 aa21.69■■□□□ 1.06
CHD3-211ENST00000481999 CFAP43Q8NDM7 1665 aa21.68■■□□□ 1.06
CHD3-211ENST00000481999 LRRIQ1Q96JM4 1722 aa21.67■■□□□ 1.06
CHD3-211ENST00000481999 CHMP7Q8WUX9 453 aaPredicted RBP21.66■■□□□ 1.06
CHD3-211ENST00000481999 MAP3K1Q13233 1512 aa21.66■■□□□ 1.06
CHD3-211ENST00000481999 GRIN2AQ12879 1464 aa21.66■■□□□ 1.06
CHD3-211ENST00000481999 MAGI1Q96QZ7 1491 aaPredicted RBP21.62■■□□□ 1.05
CHD3-211ENST00000481999 FAM50AQ14320 339 aaKnown RBP21.61■■□□□ 1.05
CHD3-211ENST00000481999 CEP170Q5SW79 1584 aa21.57■■□□□ 1.04
CHD3-211ENST00000481999 MTUS2Q5JR59 1369 aa21.56■■□□□ 1.04
CHD3-211ENST00000481999 KIAA0586Q9BVV6 1533 aa21.56■■□□□ 1.04
CHD3-211ENST00000481999 SYNJ2O15056 1496 aa21.56■■□□□ 1.04
CHD3-211ENST00000481999 DISP1Q96F81 1524 aa21.54■■□□□ 1.04
CHD3-211ENST00000481999 UGGT2Q9NYU1 1516 aa21.53■■□□□ 1.04
CHD3-211ENST00000481999 MAGI3Q5TCQ9 1506 aa21.52■■□□□ 1.04
CHD3-211ENST00000481999 CHD1O14646 1710 aa21.52■■□□□ 1.04
CHD3-211ENST00000481999 CDK13Q14004 1512 aaKnown RBP21.51■■□□□ 1.03
CHD3-211ENST00000481999 KIAA0556O60303 1618 aa21.49■■□□□ 1.03
CHD3-211ENST00000481999 DHX57Q6P158 1386 aaKnown RBP21.46■■□□□ 1.03
CHD3-211ENST00000481999 NCOA2Q15596 1464 aa21.44■■□□□ 1.02
CHD3-211ENST00000481999 EPRSP07814 1512 aaKnown RBP21.44■■□□□ 1.02
CHD3-211ENST00000481999 JPH4Q96JJ6 628 aa21.44■■□□□ 1.02
CHD3-211ENST00000481999 OSCARQ8IYS5 282 aa21.43■■□□□ 1.02
CHD3-211ENST00000481999 NUP160Q12769 1436 aa21.42■■□□□ 1.02
CHD3-211ENST00000481999 RAB3GAP2Q9H2M9 1393 aa21.42■■□□□ 1.02
CHD3-211ENST00000481999 HECW1Q76N89 1606 aa21.41■■□□□ 1.02
CHD3-211ENST00000481999 FGD6Q6ZV73 1430 aa21.41■■□□□ 1.02
CHD3-211ENST00000481999 PLB1Q6P1J6 1458 aa21.39■■□□□ 1.01
CHD3-211ENST00000481999 NUP153P49790 1475 aaKnown RBP21.37■■□□□ 1.01
CHD3-211ENST00000481999 EHBP1L1Q8N3D4 1523 aa21.36■■□□□ 1.01
CHD3-211ENST00000481999 CCDC18Q5T9S5 1454 aa21.36■■□□□ 1.01
CHD3-211ENST00000481999 SUPT6HQ7KZ85 1726 aaKnown RBP21.35■■□□□ 1.01
CHD3-211ENST00000481999 PTPRKQ15262 1439 aa21.34■■□□□ 1.01
CHD3-211ENST00000481999 MYOM3Q5VTT5 1437 aa21.33■■□□□ 1.01
CHD3-211ENST00000481999 RAPGEF6Q8TEU7 1601 aa21.31■■□□□ 1
CHD3-211ENST00000481999 SETD5Q9C0A6 1442 aa21.31■■□□□ 1
CHD3-211ENST00000481999 DIEXFQ68CQ4 756 aaKnown RBP21.29■■□□□ 1
CHD3-211ENST00000481999 CLASP1Q7Z460 1538 aa21.29■■□□□ 1
CHD3-211ENST00000481999 ARHGEF11O15085 1522 aa21.28■■□□□ 1
CHD3-211ENST00000481999 CARMIL2Q6F5E8 1435 aa21.26■□□□□ 0.99
CHD3-211ENST00000481999 CHIC2Q9UKJ5 165 aa21.26■□□□□ 0.99
CHD3-211ENST00000481999 PRG4Q92954 1404 aaPredicted RBP21.25■□□□□ 0.99
CHD3-211ENST00000481999 PTPN23Q9H3S7 1636 aa21.24■□□□□ 0.99
CHD3-211ENST00000481999 ZNF644Q9H582 1327 aaPredicted RBP21.22■□□□□ 0.99
CHD3-211ENST00000481999 DNAJC5Q9H3Z4 198 aa21.22■□□□□ 0.99
CHD3-211ENST00000481999 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.22■□□□□ 0.99
CHD3-211ENST00000481999 MAPKBP1O60336 1514 aa21.21■□□□□ 0.99
CHD3-211ENST00000481999 RRP7BPQ9NSQ0 103 aa21.19■□□□□ 0.98
CHD3-211ENST00000481999 SCAF1Q9H7N4 1312 aaKnown RBP21.19■□□□□ 0.98
CHD3-211ENST00000481999 ZNF316A6NFI3 1004 aaPredicted RBP21.18■□□□□ 0.98
CHD3-211ENST00000481999 ERCC6L2Q5T890 1561 aa21.17■□□□□ 0.98
CHD3-211ENST00000481999 SIN3AQ96ST3 1273 aa21.17■□□□□ 0.98
CHD3-211ENST00000481999 CLSPNQ9HAW4 1339 aa21.15■□□□□ 0.98
CHD3-211ENST00000481999 KIF14Q15058 1648 aa21.14■□□□□ 0.97
CHD3-211ENST00000481999 NEUROD1Q13562 356 aa21.13■□□□□ 0.97
CHD3-211ENST00000481999 CDK11AQ9UQ88 783 aaPredicted RBP21.13■□□□□ 0.97
CHD3-211ENST00000481999 PTPRGP23470 1445 aa21.12■□□□□ 0.97
CHD3-211ENST00000481999 SHROOM2Q13796 1616 aa21.12■□□□□ 0.97
CHD3-211ENST00000481999 NAIPQ13075 1403 aa21.12■□□□□ 0.97
CHD3-211ENST00000481999 ABCA8O94911 1581 aa21.11■□□□□ 0.97
CHD3-211ENST00000481999 HFM1A2PYH4 1435 aa21.11■□□□□ 0.97
CHD3-211ENST00000481999 ATP10BO94823 1461 aa21.1■□□□□ 0.97
CHD3-211ENST00000481999 TROQ12816 1431 aaPredicted RBP21.1■□□□□ 0.97
CHD3-211ENST00000481999 TCOF1Q13428 1488 aaKnown RBP21.1■□□□□ 0.97
CHD3-211ENST00000481999 ZNF777Q9ULD5 760 aaPredicted RBP21.1■□□□□ 0.97
CHD3-211ENST00000481999 ACIN1Q9UKV3 1341 aaKnown RBP21.08■□□□□ 0.97
CHD3-211ENST00000481999 MIA2Q96PC5 1412 aa21.06■□□□□ 0.96
CHD3-211ENST00000481999 RIMBP3CA6NJZ7 1639 aa21.05■□□□□ 0.96
CHD3-211ENST00000481999 RIMBP3BA6NNM3 1639 aa21.05■□□□□ 0.96
CHD3-211ENST00000481999 KDM6BO15054 1643 aa21.05■□□□□ 0.96
CHD3-211ENST00000481999 RIMBP3Q9UFD9 1639 aa21.05■□□□□ 0.96
CHD3-211ENST00000481999 CENPBP07199 599 aaPredicted RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms