RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 MLECQ14165 292 aa11.99□□□□□ -0.49
HLA-DPA1-247ENST00000479107 STAG3Q9UJ98 1225 aa11.98□□□□□ -0.49
HLA-DPA1-247ENST00000479107 FKBP8Q14318 412 aa11.97□□□□□ -0.49
HLA-DPA1-247ENST00000479107 CFTRP13569 1480 aa11.95□□□□□ -0.5
HLA-DPA1-247ENST00000479107 ANP32AP39687 249 aaKnown RBP11.95□□□□□ -0.5
HLA-DPA1-247ENST00000479107 ZNF777Q9ULD5 760 aaPredicted RBP11.95□□□□□ -0.5
HLA-DPA1-247ENST00000479107 TOP2AP11388 1531 aaKnown RBP11.95□□□□□ -0.5
HLA-DPA1-247ENST00000479107 GRIN2BQ13224 1484 aa11.95□□□□□ -0.5
HLA-DPA1-247ENST00000479107 ANP32EQ9BTT0 268 aa11.95□□□□□ -0.5
HLA-DPA1-247ENST00000479107 KIF27Q86VH2 1401 aa11.94□□□□□ -0.5
HLA-DPA1-247ENST00000479107 CCDC88BA6NC98 1476 aa11.94□□□□□ -0.5
HLA-DPA1-247ENST00000479107 PTPRGP23470 1445 aa11.92□□□□□ -0.5
HLA-DPA1-247ENST00000479107 CNGB1Q14028 1251 aaPredicted RBP11.91□□□□□ -0.5
HLA-DPA1-247ENST00000479107 GAPVD1Q14C86 1478 aa11.9□□□□□ -0.5
HLA-DPA1-247ENST00000479107 MIER1Q8N108 512 aa11.89□□□□□ -0.51
HLA-DPA1-247ENST00000479107 FAM50AQ14320 339 aaKnown RBP11.87□□□□□ -0.51
HLA-DPA1-247ENST00000479107 WIZO95785 1651 aa11.85□□□□□ -0.51
HLA-DPA1-247ENST00000479107 SYNJ1O43426 1573 aa11.85□□□□□ -0.51
HLA-DPA1-247ENST00000479107 PHF23Q9BUL5 403 aaPredicted RBP11.85□□□□□ -0.51
HLA-DPA1-247ENST00000479107 SNAPC4Q5SXM2 1469 aa11.85□□□□□ -0.51
HLA-DPA1-247ENST00000479107 TOPBP1Q92547 1522 aa11.84□□□□□ -0.51
HLA-DPA1-247ENST00000479107 RAD54L2Q9Y4B4 1467 aa11.84□□□□□ -0.51
HLA-DPA1-247ENST00000479107 EIF5BO60841 1220 aaKnown RBP11.83□□□□□ -0.52
HLA-DPA1-247ENST00000479107 PRG4Q92954 1404 aaPredicted RBP11.82□□□□□ -0.52
HLA-DPA1-247ENST00000479107 CSRNP3Q8WYN3 585 aa11.81□□□□□ -0.52
HLA-DPA1-247ENST00000479107 CARMIL1Q5VZK9 1371 aa11.81□□□□□ -0.52
HLA-DPA1-247ENST00000479107 C14orf37Q86TY3 774 aa11.81□□□□□ -0.52
HLA-DPA1-247ENST00000479107 FGD5Q6ZNL6 1462 aa11.81□□□□□ -0.52
HLA-DPA1-247ENST00000479107 SENP3Q9H4L4 574 aaPredicted RBP11.79□□□□□ -0.52
HLA-DPA1-247ENST00000479107 GLIPR1L2Q4G1C9 344 aa11.78□□□□□ -0.52
HLA-DPA1-247ENST00000479107 FHAD1B1AJZ9 1412 aa11.77□□□□□ -0.52
HLA-DPA1-247ENST00000479107 BCL11AQ9H165 835 aa11.77□□□□□ -0.53
HLA-DPA1-247ENST00000479107 DMRT2Q9Y5R5 561 aa11.77□□□□□ -0.53
HLA-DPA1-247ENST00000479107 WDR62O43379 1518 aa11.77□□□□□ -0.53
HLA-DPA1-247ENST00000479107 MAGI1Q96QZ7 1491 aaPredicted RBP11.77□□□□□ -0.53
HLA-DPA1-247ENST00000479107 SYNJ2O15056 1496 aa11.76□□□□□ -0.53
HLA-DPA1-247ENST00000479107 HNRNPUQ00839 825 aaKnown RBP eCLIP11.75□□□□□ -0.53
HLA-DPA1-247ENST00000479107 TRIM52Q96A61 297 aa11.75□□□□□ -0.53
HLA-DPA1-247ENST00000479107 ZNF608Q9ULD9 1512 aaPredicted RBP11.74□□□□□ -0.53
HLA-DPA1-247ENST00000479107 NPM2Q86SE8 214 aaKnown RBP11.74□□□□□ -0.53
HLA-DPA1-247ENST00000479107 DDX10Q13206 875 aaKnown RBP11.74□□□□□ -0.53
HLA-DPA1-247ENST00000479107 NBR1Q14596 966 aa11.74□□□□□ -0.53
HLA-DPA1-247ENST00000479107 ZBTB47Q9UFB7 747 aaPredicted RBP11.74□□□□□ -0.53
HLA-DPA1-247ENST00000479107 DNMBPQ6XZF7 1577 aa11.74□□□□□ -0.53
HLA-DPA1-247ENST00000479107 URB2Q14146 1524 aaKnown RBP11.74□□□□□ -0.53
HLA-DPA1-247ENST00000479107 FOXD1Q16676 465 aa11.72□□□□□ -0.53
HLA-DPA1-247ENST00000479107 EFCAB2Q5VUJ9 269 aa11.72□□□□□ -0.53
HLA-DPA1-247ENST00000479107 TNIKQ9UKE5 1360 aa11.71□□□□□ -0.53
HLA-DPA1-247ENST00000479107 POLA1P09884 1462 aaPredicted RBP11.71□□□□□ -0.53
HLA-DPA1-247ENST00000479107 ARHGEF11O15085 1522 aa11.71□□□□□ -0.53
HLA-DPA1-247ENST00000479107 POGZQ7Z3K3 1410 aa11.71□□□□□ -0.53
HLA-DPA1-247ENST00000479107 TSPY4P0CV99 314 aa11.71□□□□□ -0.54
HLA-DPA1-247ENST00000479107 TSPY10P0CW01 314 aa11.71□□□□□ -0.54
HLA-DPA1-247ENST00000479107 PPP1R15AO75807 674 aaPredicted RBP11.7□□□□□ -0.54
HLA-DPA1-247ENST00000479107 SUPT16HQ9Y5B9 1047 aaKnown RBP11.69□□□□□ -0.54
HLA-DPA1-247ENST00000479107 CHGAP10645 457 aaKnown RBP11.67□□□□□ -0.54
HLA-DPA1-247ENST00000479107 KIF21AQ7Z4S6 1674 aa11.67□□□□□ -0.54
HLA-DPA1-247ENST00000479107 PEG3Q9GZU2 1588 aa11.65□□□□□ -0.54
HLA-DPA1-247ENST00000479107 CCDC136Q96JN2 1154 aa11.65□□□□□ -0.54
HLA-DPA1-247ENST00000479107 GOLGA3Q08378 1498 aa11.65□□□□□ -0.55
HLA-DPA1-247ENST00000479107 TONSLQ96HA7 1378 aa11.64□□□□□ -0.55
HLA-DPA1-247ENST00000479107 TEX14Q8IWB6 1497 aa11.61□□□□□ -0.55
HLA-DPA1-247ENST00000479107 HDGFP51858 240 aaKnown RBP11.61□□□□□ -0.55
HLA-DPA1-247ENST00000479107 CLIP1P30622 1438 aa11.6□□□□□ -0.55
HLA-DPA1-247ENST00000479107 FAM9BQ8IZU0 186 aa11.6□□□□□ -0.55
HLA-DPA1-247ENST00000479107 THOC2Q8NI27 1593 aaKnown RBP11.6□□□□□ -0.55
HLA-DPA1-247ENST00000479107 HAP1P54257 671 aaPredicted RBP11.6□□□□□ -0.55
HLA-DPA1-247ENST00000479107 GGT6Q6P531 493 aa11.6□□□□□ -0.55
HLA-DPA1-247ENST00000479107 ZNF326Q5BKZ1 582 aaKnown RBP11.59□□□□□ -0.55
HLA-DPA1-247ENST00000479107 MEX3CQ5U5Q3 659 aaKnown RBP11.58□□□□□ -0.56
HLA-DPA1-247ENST00000479107 CFDP1Q9UEE9 299 aaPredicted RBP11.58□□□□□ -0.56
HLA-DPA1-247ENST00000479107 PLB1Q6P1J6 1458 aa11.57□□□□□ -0.56
HLA-DPA1-247ENST00000479107 IRX6P78412 446 aaPredicted RBP11.57□□□□□ -0.56
HLA-DPA1-247ENST00000479107 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.57□□□□□ -0.56
HLA-DPA1-247ENST00000479107 GRIN2AQ12879 1464 aa11.56□□□□□ -0.56
HLA-DPA1-247ENST00000479107 ANP32BQ92688 251 aaKnown RBP11.56□□□□□ -0.56
HLA-DPA1-247ENST00000479107 CANXP27824 592 aaKnown RBP11.55□□□□□ -0.56
HLA-DPA1-247ENST00000479107 EID1Q9Y6B2 187 aa11.55□□□□□ -0.56
HLA-DPA1-247ENST00000479107 MTUS2Q5JR59 1369 aa11.53□□□□□ -0.56
HLA-DPA1-247ENST00000479107 DCAF8L1A6NGE4 600 aa11.53□□□□□ -0.56
HLA-DPA1-247ENST00000479107 SLC4A1APQ9BWU0 796 aaKnown RBP11.53□□□□□ -0.56
HLA-DPA1-247ENST00000479107 MRS2Q9HD23 443 aa11.53□□□□□ -0.56
HLA-DPA1-247ENST00000479107 PIP4K2BP78356 416 aa11.52□□□□□ -0.56
HLA-DPA1-247ENST00000479107 RBM19Q9Y4C8 960 aaKnown RBP11.52□□□□□ -0.56
HLA-DPA1-247ENST00000479107 UPF2Q9HAU5 1272 aaKnown RBP11.52□□□□□ -0.57
HLA-DPA1-247ENST00000479107 CEP162Q5TB80 1403 aa11.52□□□□□ -0.57
HLA-DPA1-247ENST00000479107 CD109Q6YHK3 1445 aa11.52□□□□□ -0.57
HLA-DPA1-247ENST00000479107 A0A0G2JS52 829 aa11.51□□□□□ -0.57
HLA-DPA1-247ENST00000479107 DDRGK1Q96HY6 314 aa11.51□□□□□ -0.57
HLA-DPA1-247ENST00000479107 NOP58Q9Y2X3 529 aaKnown RBP11.51□□□□□ -0.57
HLA-DPA1-247ENST00000479107 TSHZ2Q9NRE2 1034 aa11.51□□□□□ -0.57
HLA-DPA1-247ENST00000479107 UACAQ9BZF9 1416 aa11.5□□□□□ -0.57
HLA-DPA1-247ENST00000479107 UBAP1LF5GYI3 381 aa11.5□□□□□ -0.57
HLA-DPA1-247ENST00000479107 PPM1GO15355 546 aaPredicted RBP11.5□□□□□ -0.57
HLA-DPA1-247ENST00000479107 PPP4R2Q9NY27 417 aa11.5□□□□□ -0.57
HLA-DPA1-247ENST00000479107 RAPGEF2Q9Y4G8 1499 aa11.49□□□□□ -0.57
HLA-DPA1-247ENST00000479107 DEKP35659 375 aaKnown RBP11.49□□□□□ -0.57
HLA-DPA1-247ENST00000479107 EIF4G3O43432 1585 aaKnown RBP11.49□□□□□ -0.57
HLA-DPA1-247ENST00000479107 EEA1Q15075 1411 aa11.48□□□□□ -0.57
HLA-DPA1-247ENST00000479107 ARAP1Q96P48 1450 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms