RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 TTBK1Q5TCY1 1321 aaPredicted RBP25.02■■□□□ 1.6
TMEM53-208ENST00000476724 ARHGAP35Q9NRY4 1499 aa24.99■■□□□ 1.59
TMEM53-208ENST00000476724 CTTNBP2Q8WZ74 1663 aa24.97■■□□□ 1.59
TMEM53-208ENST00000476724 EIF4G3O43432 1585 aaKnown RBP24.97■■□□□ 1.59
TMEM53-208ENST00000476724 APLP2Q06481 763 aa24.96■■□□□ 1.59
TMEM53-208ENST00000476724 GRIN2BQ13224 1484 aa24.96■■□□□ 1.59
TMEM53-208ENST00000476724 ADAMTS12P58397 1594 aa24.94■■□□□ 1.58
TMEM53-208ENST00000476724 FHAD1B1AJZ9 1412 aa24.89■■□□□ 1.58
TMEM53-208ENST00000476724 SNAPC4Q5SXM2 1469 aa24.84■■□□□ 1.57
TMEM53-208ENST00000476724 AEBP2Q6ZN18 517 aaPredicted RBP24.79■■□□□ 1.56
TMEM53-208ENST00000476724 P3H3Q8IVL6 736 aa24.78■■□□□ 1.56
TMEM53-208ENST00000476724 EFCAB5A4FU69 1503 aa24.75■■□□□ 1.55
TMEM53-208ENST00000476724 FHOD3Q2V2M9 1422 aa24.73■■□□□ 1.55
TMEM53-208ENST00000476724 MAGI1Q96QZ7 1491 aaPredicted RBP24.72■■□□□ 1.55
TMEM53-208ENST00000476724 SAMD9Q5K651 1589 aa24.7■■□□□ 1.54
TMEM53-208ENST00000476724 GRIN2AQ12879 1464 aa24.69■■□□□ 1.54
TMEM53-208ENST00000476724 IQGAP2Q13576 1575 aa24.67■■□□□ 1.54
TMEM53-208ENST00000476724 HNRNPUL2Q1KMD3 747 aaKnown RBP24.65■■□□□ 1.54
TMEM53-208ENST00000476724 SYNJ2O15056 1496 aa24.65■■□□□ 1.54
TMEM53-208ENST00000476724 PCF11O94913 1555 aaKnown RBP24.64■■□□□ 1.54
TMEM53-208ENST00000476724 KANK4Q5T7N3 995 aaPredicted RBP24.62■■□□□ 1.53
TMEM53-208ENST00000476724 CHMP7Q8WUX9 453 aaPredicted RBP24.6■■□□□ 1.53
TMEM53-208ENST00000476724 FBLN2P98095 1184 aa24.58■■□□□ 1.53
TMEM53-208ENST00000476724 CEP170Q5SW79 1584 aa24.58■■□□□ 1.53
TMEM53-208ENST00000476724 KIAA0586Q9BVV6 1533 aa24.57■■□□□ 1.52
TMEM53-208ENST00000476724 TIAM1Q13009 1591 aa24.55■■□□□ 1.52
TMEM53-208ENST00000476724 UGGT2Q9NYU1 1516 aa24.53■■□□□ 1.52
TMEM53-208ENST00000476724 FMN1Q68DA7 1419 aa24.53■■□□□ 1.52
TMEM53-208ENST00000476724 CASKIN1Q8WXD9 1431 aa24.51■■□□□ 1.51
TMEM53-208ENST00000476724 FYCO1Q9BQS8 1478 aa24.51■■□□□ 1.51
TMEM53-208ENST00000476724 MAP3K1Q13233 1512 aa24.5■■□□□ 1.51
TMEM53-208ENST00000476724 ATP1B4Q9UN42 357 aaPredicted RBP24.5■■□□□ 1.51
TMEM53-208ENST00000476724 RRBP1Q9P2E9 1410 aaKnown RBP24.5■■□□□ 1.51
TMEM53-208ENST00000476724 CFAP43Q8NDM7 1665 aa24.49■■□□□ 1.51
TMEM53-208ENST00000476724 NUP160Q12769 1436 aa24.48■■□□□ 1.51
TMEM53-208ENST00000476724 DIEXFQ68CQ4 756 aaKnown RBP24.46■■□□□ 1.51
TMEM53-208ENST00000476724 LRRIQ1Q96JM4 1722 aa24.46■■□□□ 1.51
TMEM53-208ENST00000476724 CLSPNQ9HAW4 1339 aa24.45■■□□□ 1.5
TMEM53-208ENST00000476724 DISP1Q96F81 1524 aa24.45■■□□□ 1.5
TMEM53-208ENST00000476724 CHD1O14646 1710 aa24.44■■□□□ 1.5
TMEM53-208ENST00000476724 KIAA0556O60303 1618 aa24.44■■□□□ 1.5
TMEM53-208ENST00000476724 ZNF316A6NFI3 1004 aaPredicted RBP24.42■■□□□ 1.5
TMEM53-208ENST00000476724 LRRC9Q6ZRR7 1453 aa24.42■■□□□ 1.5
TMEM53-208ENST00000476724 CCNB3Q8WWL7 1395 aa24.36■■□□□ 1.49
TMEM53-208ENST00000476724 JPH4Q96JJ6 628 aa24.33■■□□□ 1.48
TMEM53-208ENST00000476724 HECW1Q76N89 1606 aa24.3■■□□□ 1.48
TMEM53-208ENST00000476724 DHX57Q6P158 1386 aaKnown RBP24.3■■□□□ 1.48
TMEM53-208ENST00000476724 PHLDB1Q86UU1 1377 aa24.26■■□□□ 1.47
TMEM53-208ENST00000476724 CARMIL2Q6F5E8 1435 aa24.23■■□□□ 1.47
TMEM53-208ENST00000476724 EPRSP07814 1512 aaKnown RBP24.23■■□□□ 1.47
TMEM53-208ENST00000476724 CCDC18Q5T9S5 1454 aa24.22■■□□□ 1.47
TMEM53-208ENST00000476724 CDK13Q14004 1512 aaKnown RBP24.22■■□□□ 1.47
TMEM53-208ENST00000476724 MAGI3Q5TCQ9 1506 aa24.21■■□□□ 1.47
TMEM53-208ENST00000476724 RAPGEF6Q8TEU7 1601 aa24.21■■□□□ 1.47
TMEM53-208ENST00000476724 MTUS2Q5JR59 1369 aa24.2■■□□□ 1.47
TMEM53-208ENST00000476724 ARID3CA6NKF2 412 aa24.2■■□□□ 1.46
TMEM53-208ENST00000476724 NUP153P49790 1475 aaKnown RBP24.17■■□□□ 1.46
TMEM53-208ENST00000476724 PRG4Q92954 1404 aaPredicted RBP24.16■■□□□ 1.46
TMEM53-208ENST00000476724 PLB1Q6P1J6 1458 aa24.16■■□□□ 1.46
TMEM53-208ENST00000476724 EHBP1L1Q8N3D4 1523 aa24.16■■□□□ 1.46
TMEM53-208ENST00000476724 SHROOM2Q13796 1616 aa24.15■■□□□ 1.46
TMEM53-208ENST00000476724 SUPT6HQ7KZ85 1726 aaKnown RBP24.12■■□□□ 1.45
TMEM53-208ENST00000476724 NCOA2Q15596 1464 aa24.11■■□□□ 1.45
TMEM53-208ENST00000476724 CENPBP07199 599 aaPredicted RBP24.1■■□□□ 1.45
TMEM53-208ENST00000476724 CLASP1Q7Z460 1538 aa24.09■■□□□ 1.45
TMEM53-208ENST00000476724 ACIN1Q9UKV3 1341 aaKnown RBP24.09■■□□□ 1.45
TMEM53-208ENST00000476724 SCAF1Q9H7N4 1312 aaKnown RBP24.08■■□□□ 1.44
TMEM53-208ENST00000476724 ERCC6L2Q5T890 1561 aa24.08■■□□□ 1.44
TMEM53-208ENST00000476724 ABCA8O94911 1581 aa24.07■■□□□ 1.44
TMEM53-208ENST00000476724 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.06■■□□□ 1.44
TMEM53-208ENST00000476724 ITGAEP38570 1179 aa24.06■■□□□ 1.44
TMEM53-208ENST00000476724 ARHGEF11O15085 1522 aa24.05■■□□□ 1.44
TMEM53-208ENST00000476724 RAB3GAP2Q9H2M9 1393 aa24.04■■□□□ 1.44
TMEM53-208ENST00000476724 SETD5Q9C0A6 1442 aa24.04■■□□□ 1.44
TMEM53-208ENST00000476724 FAM50AQ14320 339 aaKnown RBP24.03■■□□□ 1.44
TMEM53-208ENST00000476724 FGD6Q6ZV73 1430 aa24.03■■□□□ 1.44
TMEM53-208ENST00000476724 PTPRGP23470 1445 aa24.01■■□□□ 1.43
TMEM53-208ENST00000476724 MYOM3Q5VTT5 1437 aa24■■□□□ 1.43
TMEM53-208ENST00000476724 NEUROD1Q13562 356 aa23.97■■□□□ 1.43
TMEM53-208ENST00000476724 ATP10BO94823 1461 aa23.92■■□□□ 1.42
TMEM53-208ENST00000476724 PTPN23Q9H3S7 1636 aa23.91■■□□□ 1.42
TMEM53-208ENST00000476724 CDK11AQ9UQ88 783 aaPredicted RBP23.91■■□□□ 1.42
TMEM53-208ENST00000476724 MAPKBP1O60336 1514 aa23.9■■□□□ 1.42
TMEM53-208ENST00000476724 MIER1Q8N108 512 aa23.9■■□□□ 1.42
TMEM53-208ENST00000476724 TROQ12816 1431 aaPredicted RBP23.89■■□□□ 1.42
TMEM53-208ENST00000476724 KIF14Q15058 1648 aa23.87■■□□□ 1.41
TMEM53-208ENST00000476724 UACAQ9BZF9 1416 aa23.87■■□□□ 1.41
TMEM53-208ENST00000476724 ADCY10Q96PN6 1610 aa23.85■■□□□ 1.41
TMEM53-208ENST00000476724 TCOF1Q13428 1488 aaKnown RBP23.83■■□□□ 1.41
TMEM53-208ENST00000476724 PTPRKQ15262 1439 aa23.83■■□□□ 1.4
TMEM53-208ENST00000476724 TIMELESSQ9UNS1 1208 aa23.82■■□□□ 1.4
TMEM53-208ENST00000476724 MIA2Q96PC5 1412 aa23.81■■□□□ 1.4
TMEM53-208ENST00000476724 ABCC2Q92887 1545 aa23.8■■□□□ 1.4
TMEM53-208ENST00000476724 PLEKHD1A6NEE1 506 aa23.79■■□□□ 1.4
TMEM53-208ENST00000476724 OSCARQ8IYS5 282 aa23.77■■□□□ 1.4
TMEM53-208ENST00000476724 ITSN2Q9NZM3 1697 aa23.74■■□□□ 1.39
TMEM53-208ENST00000476724 GPATCH8Q9UKJ3 1502 aaKnown RBP23.73■■□□□ 1.39
TMEM53-208ENST00000476724 ZNF644Q9H582 1327 aaPredicted RBP23.72■■□□□ 1.39
TMEM53-208ENST00000476724 ABCC10Q5T3U5 1492 aa23.72■■□□□ 1.39
TMEM53-208ENST00000476724 HFM1A2PYH4 1435 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms