RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KIF27Q86VH2 1401 aa21.51■■□□□ 1.03
MSH5-SAPCD1-205ENST00000476085 CUL7Q14999 1698 aa21.45■■□□□ 1.02
MSH5-SAPCD1-205ENST00000476085 KIAA0586Q9BVV6 1533 aa21.45■■□□□ 1.02
MSH5-SAPCD1-205ENST00000476085 CARMIL1Q5VZK9 1371 aa21.38■■□□□ 1.01
MSH5-SAPCD1-205ENST00000476085 KIF13AQ9H1H9 1805 aa21.36■■□□□ 1.01
MSH5-SAPCD1-205ENST00000476085 ADCY10Q96PN6 1610 aa21.3■■□□□ 1
MSH5-SAPCD1-205ENST00000476085 MAPKBP1O60336 1514 aa21.28■■□□□ 1
MSH5-SAPCD1-205ENST00000476085 ABCC10Q5T3U5 1492 aa21.26■□□□□ 0.99
MSH5-SAPCD1-205ENST00000476085 NPM1P06748 294 aaKnown RBP eCLIP21.22■□□□□ 0.99
MSH5-SAPCD1-205ENST00000476085 PTPRGP23470 1445 aa21.21■□□□□ 0.99
MSH5-SAPCD1-205ENST00000476085 IQGAP2Q13576 1575 aa21.2■□□□□ 0.98
MSH5-SAPCD1-205ENST00000476085 FAM69CQ0P6D2 419 aa21.19■□□□□ 0.98
MSH5-SAPCD1-205ENST00000476085 DIP2BQ9P265 1576 aa21.19■□□□□ 0.98
MSH5-SAPCD1-205ENST00000476085 TNIKQ9UKE5 1360 aa21.18■□□□□ 0.98
MSH5-SAPCD1-205ENST00000476085 CARMIL2Q6F5E8 1435 aa21.17■□□□□ 0.98
MSH5-SAPCD1-205ENST00000476085 RAPGEF2Q9Y4G8 1499 aa21.17■□□□□ 0.98
MSH5-SAPCD1-205ENST00000476085 DISP1Q96F81 1524 aa21.15■□□□□ 0.98
MSH5-SAPCD1-205ENST00000476085 UGGT2Q9NYU1 1516 aa21.12■□□□□ 0.97
MSH5-SAPCD1-205ENST00000476085 UHRF1BP1LA0JNW5 1464 aa21.11■□□□□ 0.97
MSH5-SAPCD1-205ENST00000476085 ABCC2Q92887 1545 aa21.1■□□□□ 0.97
MSH5-SAPCD1-205ENST00000476085 UACAQ9BZF9 1416 aa21.05■□□□□ 0.96
MSH5-SAPCD1-205ENST00000476085 TTBK1Q5TCY1 1321 aaPredicted RBP21.03■□□□□ 0.96
MSH5-SAPCD1-205ENST00000476085 PRXQ9BXM0 1461 aa21.02■□□□□ 0.96
MSH5-SAPCD1-205ENST00000476085 AEBP2Q6ZN18 517 aaPredicted RBP21.02■□□□□ 0.96
MSH5-SAPCD1-205ENST00000476085 ASXL2Q76L83 1435 aa21.02■□□□□ 0.96
MSH5-SAPCD1-205ENST00000476085 PLB1Q6P1J6 1458 aa21.01■□□□□ 0.95
MSH5-SAPCD1-205ENST00000476085 KIAA0556O60303 1618 aa21.01■□□□□ 0.95
MSH5-SAPCD1-205ENST00000476085 KDM5BQ9UGL1 1544 aa21.01■□□□□ 0.95
MSH5-SAPCD1-205ENST00000476085 GLI2P10070 1586 aa21■□□□□ 0.95
MSH5-SAPCD1-205ENST00000476085 TSPOAP1O95153 1857 aa21■□□□□ 0.95
MSH5-SAPCD1-205ENST00000476085 CTTNBP2Q8WZ74 1663 aa20.98■□□□□ 0.95
MSH5-SAPCD1-205ENST00000476085 PPRC1Q5VV67 1664 aaKnown RBP20.95■□□□□ 0.94
MSH5-SAPCD1-205ENST00000476085 KDM6BO15054 1643 aa20.93■□□□□ 0.94
MSH5-SAPCD1-205ENST00000476085 ZCCHC11Q5TAX3 1644 aaKnown RBP20.91■□□□□ 0.94
MSH5-SAPCD1-205ENST00000476085 EPRSP07814 1512 aaKnown RBP20.9■□□□□ 0.94
MSH5-SAPCD1-205ENST00000476085 GOLGA3Q08378 1498 aa20.89■□□□□ 0.94
MSH5-SAPCD1-205ENST00000476085 MAP3K4Q9Y6R4 1608 aa20.86■□□□□ 0.93
MSH5-SAPCD1-205ENST00000476085 ABCA8O94911 1581 aa20.86■□□□□ 0.93
MSH5-SAPCD1-205ENST00000476085 CSRNP3Q8WYN3 585 aa20.83■□□□□ 0.93
MSH5-SAPCD1-205ENST00000476085 COL17A1Q9UMD9 1497 aaPredicted RBP20.81■□□□□ 0.92
MSH5-SAPCD1-205ENST00000476085 WDR7Q9Y4E6 1490 aa20.81■□□□□ 0.92
MSH5-SAPCD1-205ENST00000476085 KDM4FA0A1W2PPD8 638 aa20.8■□□□□ 0.92
MSH5-SAPCD1-205ENST00000476085 TEX14Q8IWB6 1497 aa20.75■□□□□ 0.91
MSH5-SAPCD1-205ENST00000476085 SAMD9Q5K651 1589 aa20.73■□□□□ 0.91
MSH5-SAPCD1-205ENST00000476085 EEA1Q15075 1411 aa20.73■□□□□ 0.91
MSH5-SAPCD1-205ENST00000476085 MAGI3Q5TCQ9 1506 aa20.7■□□□□ 0.9
MSH5-SAPCD1-205ENST00000476085 CFAP43Q8NDM7 1665 aa20.7■□□□□ 0.9
MSH5-SAPCD1-205ENST00000476085 ATP10BO94823 1461 aa20.69■□□□□ 0.9
MSH5-SAPCD1-205ENST00000476085 P3H3Q8IVL6 736 aa20.68■□□□□ 0.9
MSH5-SAPCD1-205ENST00000476085 CD109Q6YHK3 1445 aa20.68■□□□□ 0.9
MSH5-SAPCD1-205ENST00000476085 KCNH8Q96L42 1107 aa20.66■□□□□ 0.9
MSH5-SAPCD1-205ENST00000476085 FAM9AQ8IZU1 332 aaPredicted RBP20.61■□□□□ 0.89
MSH5-SAPCD1-205ENST00000476085 RAPGEF6Q8TEU7 1601 aa20.6■□□□□ 0.89
MSH5-SAPCD1-205ENST00000476085 ADGRL1O94910 1474 aa20.57■□□□□ 0.88
MSH5-SAPCD1-205ENST00000476085 KIF21BO75037 1637 aa20.57■□□□□ 0.88
MSH5-SAPCD1-205ENST00000476085 ABCA9Q8IUA7 1624 aa20.56■□□□□ 0.88
MSH5-SAPCD1-205ENST00000476085 ARID3CA6NKF2 412 aa20.56■□□□□ 0.88
MSH5-SAPCD1-205ENST00000476085 ARAP3Q8WWN8 1544 aa20.56■□□□□ 0.88
MSH5-SAPCD1-205ENST00000476085 NUP153P49790 1475 aaKnown RBP20.56■□□□□ 0.88
MSH5-SAPCD1-205ENST00000476085 FHOD3Q2V2M9 1422 aa20.53■□□□□ 0.88
MSH5-SAPCD1-205ENST00000476085 PHLDB1Q86UU1 1377 aa20.51■□□□□ 0.87
MSH5-SAPCD1-205ENST00000476085 CHIC1Q5VXU3 224 aa20.49■□□□□ 0.87
MSH5-SAPCD1-205ENST00000476085 EFCAB5A4FU69 1503 aa20.48■□□□□ 0.87
MSH5-SAPCD1-205ENST00000476085 RANGAP1P46060 587 aaPredicted RBP20.46■□□□□ 0.87
MSH5-SAPCD1-205ENST00000476085 NEO1Q92859 1461 aa20.45■□□□□ 0.86
MSH5-SAPCD1-205ENST00000476085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.42■□□□□ 0.86
MSH5-SAPCD1-205ENST00000476085 HNRNPUL2Q1KMD3 747 aaKnown RBP20.42■□□□□ 0.86
MSH5-SAPCD1-205ENST00000476085 PLEKHD1A6NEE1 506 aa20.41■□□□□ 0.86
MSH5-SAPCD1-205ENST00000476085 RAPGEF3O95398 923 aa20.39■□□□□ 0.85
MSH5-SAPCD1-205ENST00000476085 FRMPD1Q5SYB0 1578 aa20.37■□□□□ 0.85
MSH5-SAPCD1-205ENST00000476085 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.36■□□□□ 0.85
MSH5-SAPCD1-205ENST00000476085 ARHGAP35Q9NRY4 1499 aa20.35■□□□□ 0.85
MSH5-SAPCD1-205ENST00000476085 UBTFP17480 764 aaKnown RBP20.34■□□□□ 0.85
MSH5-SAPCD1-205ENST00000476085 CDK13Q14004 1512 aaKnown RBP20.32■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 AKNAQ7Z591 1439 aa20.31■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 TTC37Q6PGP7 1564 aa20.3■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 FMN1Q68DA7 1419 aa20.3■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 RICTORQ6R327 1708 aa20.3■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 ADAMTSL3P82987 1691 aa20.29■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 FANCAO15360 1455 aa20.28■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 HECW2Q9P2P5 1572 aa20.28■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 DENND4BO75064 1496 aaPredicted RBP20.27■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 EHMT2Q96KQ7 1210 aa20.27■□□□□ 0.84
MSH5-SAPCD1-205ENST00000476085 CFAP74Q9C0B2 1584 aa20.26■□□□□ 0.83
MSH5-SAPCD1-205ENST00000476085 PLCH2O75038 1416 aa20.25■□□□□ 0.83
MSH5-SAPCD1-205ENST00000476085 HECW1Q76N89 1606 aa20.24■□□□□ 0.83
MSH5-SAPCD1-205ENST00000476085 BCORL1Q5H9F3 1711 aa20.22■□□□□ 0.83
MSH5-SAPCD1-205ENST00000476085 ZMYM4Q5VZL5 1548 aa20.22■□□□□ 0.83
MSH5-SAPCD1-205ENST00000476085 LRRIQ1Q96JM4 1722 aa20.21■□□□□ 0.83
MSH5-SAPCD1-205ENST00000476085 ARHGEF40Q8TER5 1519 aa20.21■□□□□ 0.83
MSH5-SAPCD1-205ENST00000476085 PTPRMP28827 1452 aa20.2■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 MAGI2Q86UL8 1455 aa20.18■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 CDK11AQ9UQ88 783 aaPredicted RBP20.17■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 TROQ12816 1431 aaPredicted RBP20.17■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 ATP1B4Q9UN42 357 aaPredicted RBP20.15■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 SCAPERQ9BY12 1400 aa20.15■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 YEATS2Q9ULM3 1422 aa20.15■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 KIF14Q15058 1648 aa20.15■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 SIGLEC1Q9BZZ2 1709 aa20.15■□□□□ 0.82
MSH5-SAPCD1-205ENST00000476085 MYO5CQ9NQX4 1742 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms