RNA–Protein interactions for RNA: ENST00000475491.1

KCNIP3-206, Transcript of potassium voltage-gated channel interacting protein 3, humanhuman

TSL 1 (best)

Gene KCNIP3, Length 3,658 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3-206ENST00000475491 VPS8Q8N3P4 1428 aa17.24■□□□□ 0.35
KCNIP3-206ENST00000475491 MRC2Q9UBG0 1479 aa17.2■□□□□ 0.34
KCNIP3-206ENST00000475491 ARHGAP35Q9NRY4 1499 aa17.19■□□□□ 0.34
KCNIP3-206ENST00000475491 ABCA10Q8WWZ4 1543 aa17.19■□□□□ 0.34
KCNIP3-206ENST00000475491 PRDM2Q13029 1718 aa17.18■□□□□ 0.34
KCNIP3-206ENST00000475491 ZEB1P37275 1124 aaPredicted RBP17.1■□□□□ 0.33
KCNIP3-206ENST00000475491 ERICH3Q5RHP9 1530 aa17.09■□□□□ 0.33
KCNIP3-206ENST00000475491 SNAPC4Q5SXM2 1469 aa17.04■□□□□ 0.32
KCNIP3-206ENST00000475491 CHIC2Q9UKJ5 165 aa17.03■□□□□ 0.32
KCNIP3-206ENST00000475491 TARBP1Q13395 1621 aaKnown RBP16.98■□□□□ 0.31
KCNIP3-206ENST00000475491 ZNF777Q9ULD5 760 aaPredicted RBP16.98■□□□□ 0.31
KCNIP3-206ENST00000475491 GRIN2BQ13224 1484 aa16.98■□□□□ 0.31
KCNIP3-206ENST00000475491 MTUS2Q5JR59 1369 aa16.97■□□□□ 0.31
KCNIP3-206ENST00000475491 IFT140Q96RY7 1462 aa16.96■□□□□ 0.31
KCNIP3-206ENST00000475491 JPH4Q96JJ6 628 aa16.96■□□□□ 0.31
KCNIP3-206ENST00000475491 FHAD1B1AJZ9 1412 aa16.95■□□□□ 0.3
KCNIP3-206ENST00000475491 PHLDB1Q86UU1 1377 aa16.92■□□□□ 0.3
KCNIP3-206ENST00000475491 ABCA5Q8WWZ7 1642 aa16.92■□□□□ 0.3
KCNIP3-206ENST00000475491 SCAF1Q9H7N4 1312 aaKnown RBP16.91■□□□□ 0.3
KCNIP3-206ENST00000475491 NEUROD1Q13562 356 aa16.91■□□□□ 0.3
KCNIP3-206ENST00000475491 WDR62O43379 1518 aa16.9■□□□□ 0.3
KCNIP3-206ENST00000475491 RRP7BPQ9NSQ0 103 aa16.89■□□□□ 0.29
KCNIP3-206ENST00000475491 EIF4G3O43432 1585 aaKnown RBP16.87■□□□□ 0.29
KCNIP3-206ENST00000475491 PCF11O94913 1555 aaKnown RBP16.87■□□□□ 0.29
KCNIP3-206ENST00000475491 KCNH8Q96L42 1107 aa16.86■□□□□ 0.29
KCNIP3-206ENST00000475491 CCNB3Q8WWL7 1395 aa16.86■□□□□ 0.29
KCNIP3-206ENST00000475491 WDR97A6NE52 1622 aa16.83■□□□□ 0.29
KCNIP3-206ENST00000475491 THOC2Q8NI27 1593 aaKnown RBP16.83■□□□□ 0.29
KCNIP3-206ENST00000475491 CUL7Q14999 1698 aa16.83■□□□□ 0.28
KCNIP3-206ENST00000475491 ZNF644Q9H582 1327 aaPredicted RBP16.83■□□□□ 0.28
KCNIP3-206ENST00000475491 PBRM1Q86U86 1689 aa16.81■□□□□ 0.28
KCNIP3-206ENST00000475491 GRIN2AQ12879 1464 aa16.81■□□□□ 0.28
KCNIP3-206ENST00000475491 CDK13Q14004 1512 aaKnown RBP16.8■□□□□ 0.28
KCNIP3-206ENST00000475491 LRRC9Q6ZRR7 1453 aa16.79■□□□□ 0.28
KCNIP3-206ENST00000475491 FMN1Q68DA7 1419 aa16.79■□□□□ 0.28
KCNIP3-206ENST00000475491 SIN3AQ96ST3 1273 aa16.78■□□□□ 0.28
KCNIP3-206ENST00000475491 ADAMTS12P58397 1594 aa16.78■□□□□ 0.28
KCNIP3-206ENST00000475491 YTHDC1Q96MU7 727 aaKnown RBP16.78■□□□□ 0.28
KCNIP3-206ENST00000475491 TRIM52Q96A61 297 aa16.77■□□□□ 0.28
KCNIP3-206ENST00000475491 DIEXFQ68CQ4 756 aaKnown RBP16.76■□□□□ 0.27
KCNIP3-206ENST00000475491 PLB1Q6P1J6 1458 aa16.76■□□□□ 0.27
KCNIP3-206ENST00000475491 IQGAP2Q13576 1575 aa16.75■□□□□ 0.27
KCNIP3-206ENST00000475491 TIAM1Q13009 1591 aa16.74■□□□□ 0.27
KCNIP3-206ENST00000475491 CASKIN1Q8WXD9 1431 aa16.74■□□□□ 0.27
KCNIP3-206ENST00000475491 HIRIP3Q9BW71 556 aaPredicted RBP16.73■□□□□ 0.27
KCNIP3-206ENST00000475491 CTTNBP2Q8WZ74 1663 aa16.73■□□□□ 0.27
KCNIP3-206ENST00000475491 FOXD1Q16676 465 aa16.73■□□□□ 0.27
KCNIP3-206ENST00000475491 SYNJ2O15056 1496 aa16.72■□□□□ 0.27
KCNIP3-206ENST00000475491 PRG4Q92954 1404 aaPredicted RBP16.7■□□□□ 0.26
KCNIP3-206ENST00000475491 RAB3GAP2Q9H2M9 1393 aa16.7■□□□□ 0.26
KCNIP3-206ENST00000475491 KIAA0586Q9BVV6 1533 aa16.69■□□□□ 0.26
KCNIP3-206ENST00000475491 CEP170Q5SW79 1584 aa16.68■□□□□ 0.26
KCNIP3-206ENST00000475491 PLEKHD1A6NEE1 506 aa16.67■□□□□ 0.26
KCNIP3-206ENST00000475491 CFDP1Q9UEE9 299 aaPredicted RBP16.66■□□□□ 0.26
KCNIP3-206ENST00000475491 CDK11AQ9UQ88 783 aaPredicted RBP16.66■□□□□ 0.26
KCNIP3-206ENST00000475491 FYCO1Q9BQS8 1478 aa16.65■□□□□ 0.26
KCNIP3-206ENST00000475491 MAGI1Q96QZ7 1491 aaPredicted RBP16.65■□□□□ 0.26
KCNIP3-206ENST00000475491 DISP1Q96F81 1524 aa16.65■□□□□ 0.26
KCNIP3-206ENST00000475491 EFCAB5A4FU69 1503 aa16.64■□□□□ 0.25
KCNIP3-206ENST00000475491 MYT1LQ9UL68 1186 aa16.64■□□□□ 0.25
KCNIP3-206ENST00000475491 NCOA2Q15596 1464 aa16.64■□□□□ 0.25
KCNIP3-206ENST00000475491 PTPRGP23470 1445 aa16.63■□□□□ 0.25
KCNIP3-206ENST00000475491 CARMIL2Q6F5E8 1435 aa16.63■□□□□ 0.25
KCNIP3-206ENST00000475491 MAGI3Q5TCQ9 1506 aa16.62■□□□□ 0.25
KCNIP3-206ENST00000475491 EPRSP07814 1512 aaKnown RBP16.61■□□□□ 0.25
KCNIP3-206ENST00000475491 RRBP1Q9P2E9 1410 aaKnown RBP16.61■□□□□ 0.25
KCNIP3-206ENST00000475491 DHX57Q6P158 1386 aaKnown RBP16.61■□□□□ 0.25
KCNIP3-206ENST00000475491 HNRNPMP52272 730 aaKnown RBP eCLIP16.6■□□□□ 0.25
KCNIP3-206ENST00000475491 FGD6Q6ZV73 1430 aa16.59■□□□□ 0.25
KCNIP3-206ENST00000475491 ZNF316A6NFI3 1004 aaPredicted RBP16.59■□□□□ 0.25
KCNIP3-206ENST00000475491 PTPRKQ15262 1439 aa16.58■□□□□ 0.25
KCNIP3-206ENST00000475491 ERCC6L2Q5T890 1561 aa16.57■□□□□ 0.24
KCNIP3-206ENST00000475491 SAMD9Q5K651 1589 aa16.56■□□□□ 0.24
KCNIP3-206ENST00000475491 NUP153P49790 1475 aaKnown RBP16.55■□□□□ 0.24
KCNIP3-206ENST00000475491 SETD5Q9C0A6 1442 aa16.54■□□□□ 0.24
KCNIP3-206ENST00000475491 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.54■□□□□ 0.24
KCNIP3-206ENST00000475491 CNGB1Q14028 1251 aaPredicted RBP16.53■□□□□ 0.24
KCNIP3-206ENST00000475491 KIAA0556O60303 1618 aa16.53■□□□□ 0.24
KCNIP3-206ENST00000475491 LRRIQ1Q96JM4 1722 aa16.52■□□□□ 0.24
KCNIP3-206ENST00000475491 NUP160Q12769 1436 aa16.52■□□□□ 0.24
KCNIP3-206ENST00000475491 MYOM3Q5VTT5 1437 aa16.52■□□□□ 0.23
KCNIP3-206ENST00000475491 ZNF326Q5BKZ1 582 aaKnown RBP16.51■□□□□ 0.23
KCNIP3-206ENST00000475491 CYB5RLQ6IPT4 315 aa16.5■□□□□ 0.23
KCNIP3-206ENST00000475491 UGGT2Q9NYU1 1516 aa16.5■□□□□ 0.23
KCNIP3-206ENST00000475491 OSCARQ8IYS5 282 aa16.5■□□□□ 0.23
KCNIP3-206ENST00000475491 CHD1O14646 1710 aa16.48■□□□□ 0.23
KCNIP3-206ENST00000475491 MIER1Q8N108 512 aa16.48■□□□□ 0.23
KCNIP3-206ENST00000475491 SENP3Q9H4L4 574 aaPredicted RBP16.46■□□□□ 0.22
KCNIP3-206ENST00000475491 GTF3C3Q9Y5Q9 886 aa16.46■□□□□ 0.22
KCNIP3-206ENST00000475491 HECW1Q76N89 1606 aa16.44■□□□□ 0.22
KCNIP3-206ENST00000475491 CCDC18Q5T9S5 1454 aa16.44■□□□□ 0.22
KCNIP3-206ENST00000475491 ARHGEF11O15085 1522 aa16.44■□□□□ 0.22
KCNIP3-206ENST00000475491 ATP10BO94823 1461 aa16.43■□□□□ 0.22
KCNIP3-206ENST00000475491 CFAP43Q8NDM7 1665 aa16.43■□□□□ 0.22
KCNIP3-206ENST00000475491 CENPBP07199 599 aaPredicted RBP16.43■□□□□ 0.22
KCNIP3-206ENST00000475491 SLC4A1APQ9BWU0 796 aaKnown RBP16.43■□□□□ 0.22
KCNIP3-206ENST00000475491 TSPY4P0CV99 314 aa16.41■□□□□ 0.22
KCNIP3-206ENST00000475491 TSPY10P0CW01 314 aa16.41■□□□□ 0.22
KCNIP3-206ENST00000475491 RAPGEF6Q8TEU7 1601 aa16.41■□□□□ 0.22
KCNIP3-206ENST00000475491 BCL11AQ9H165 835 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms