RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 KIAA0586Q9BVV6 1533 aa28.38■■■□□ 2.13
SCAF11-206ENST00000474828 RIMBP3CA6NJZ7 1639 aa28.37■■■□□ 2.13
SCAF11-206ENST00000474828 RIMBP3BA6NNM3 1639 aa28.37■■■□□ 2.13
SCAF11-206ENST00000474828 RIMBP3Q9UFD9 1639 aa28.37■■■□□ 2.13
SCAF11-206ENST00000474828 JPH4Q96JJ6 628 aa28.26■■■□□ 2.11
SCAF11-206ENST00000474828 ARAP1Q96P48 1450 aa28.21■■■□□ 2.11
SCAF11-206ENST00000474828 KIF21BO75037 1637 aa28.2■■■□□ 2.1
SCAF11-206ENST00000474828 IQGAP2Q13576 1575 aa28.19■■■□□ 2.1
SCAF11-206ENST00000474828 ERCC6L2Q5T890 1561 aa28.19■■■□□ 2.1
SCAF11-206ENST00000474828 PRG4Q92954 1404 aaPredicted RBP28.17■■■□□ 2.1
SCAF11-206ENST00000474828 FAM9AQ8IZU1 332 aaPredicted RBP28.13■■■□□ 2.09
SCAF11-206ENST00000474828 UGGT2Q9NYU1 1516 aa28.13■■■□□ 2.09
SCAF11-206ENST00000474828 CTTNBP2Q8WZ74 1663 aa28.12■■■□□ 2.09
SCAF11-206ENST00000474828 CYB5RLQ6IPT4 315 aa28.07■■■□□ 2.08
SCAF11-206ENST00000474828 DISP1Q96F81 1524 aa28.04■■■□□ 2.08
SCAF11-206ENST00000474828 CARMIL2Q6F5E8 1435 aa28■■■□□ 2.07
SCAF11-206ENST00000474828 GOLGA3Q08378 1498 aa27.99■■■□□ 2.07
SCAF11-206ENST00000474828 KIAA0556O60303 1618 aa27.93■■■□□ 2.06
SCAF11-206ENST00000474828 TNIKQ9UKE5 1360 aa27.92■■■□□ 2.06
SCAF11-206ENST00000474828 SAMD9Q5K651 1589 aa27.87■■■□□ 2.05
SCAF11-206ENST00000474828 PTPRGP23470 1445 aa27.86■■■□□ 2.05
SCAF11-206ENST00000474828 TRHP20396 242 aaPredicted RBP27.81■■■□□ 2.04
SCAF11-206ENST00000474828 UBTFP17480 764 aaKnown RBP27.77■■■□□ 2.04
SCAF11-206ENST00000474828 EFCAB5A4FU69 1503 aa27.77■■■□□ 2.04
SCAF11-206ENST00000474828 UHRF1BP1LA0JNW5 1464 aa27.76■■■□□ 2.04
SCAF11-206ENST00000474828 ADCY10Q96PN6 1610 aa27.74■■■□□ 2.03
SCAF11-206ENST00000474828 UACAQ9BZF9 1416 aa27.71■■■□□ 2.03
SCAF11-206ENST00000474828 ABCC2Q92887 1545 aa27.67■■■□□ 2.02
SCAF11-206ENST00000474828 ABCA8O94911 1581 aa27.66■■■□□ 2.02
SCAF11-206ENST00000474828 ARHGAP35Q9NRY4 1499 aa27.64■■■□□ 2.01
SCAF11-206ENST00000474828 EHMT2Q96KQ7 1210 aa27.62■■■□□ 2.01
SCAF11-206ENST00000474828 PLB1Q6P1J6 1458 aa27.62■■■□□ 2.01
SCAF11-206ENST00000474828 KDM5BQ9UGL1 1544 aa27.62■■■□□ 2.01
SCAF11-206ENST00000474828 MAPKBP1O60336 1514 aa27.6■■■□□ 2.01
SCAF11-206ENST00000474828 FHOD3Q2V2M9 1422 aa27.58■■■□□ 2.01
SCAF11-206ENST00000474828 P3H3Q8IVL6 736 aa27.58■■■□□ 2.01
SCAF11-206ENST00000474828 TTBK1Q5TCY1 1321 aaPredicted RBP27.54■■■□□ 2
SCAF11-206ENST00000474828 NPM1P06748 294 aaKnown RBP eCLIP27.52■■■□□ 2
SCAF11-206ENST00000474828 RANGAP1P46060 587 aaPredicted RBP27.5■■□□□ 1.99
SCAF11-206ENST00000474828 RAPGEF6Q8TEU7 1601 aa27.49■■□□□ 1.99
SCAF11-206ENST00000474828 CLIP1P30622 1438 aa27.48■■□□□ 1.99
SCAF11-206ENST00000474828 FMN1Q68DA7 1419 aa27.48■■□□□ 1.99
SCAF11-206ENST00000474828 ZCCHC11Q5TAX3 1644 aaKnown RBP27.45■■□□□ 1.99
SCAF11-206ENST00000474828 LOC105371045A0A1W2PR82 267 aa27.45■■□□□ 1.98
SCAF11-206ENST00000474828 NUP153P49790 1475 aaKnown RBP27.44■■□□□ 1.98
SCAF11-206ENST00000474828 ATP10BO94823 1461 aa27.42■■□□□ 1.98
SCAF11-206ENST00000474828 ABCC10Q5T3U5 1492 aa27.42■■□□□ 1.98
SCAF11-206ENST00000474828 CEP162Q5TB80 1403 aa27.41■■□□□ 1.98
SCAF11-206ENST00000474828 ASXL2Q76L83 1435 aa27.4■■□□□ 1.98
SCAF11-206ENST00000474828 DIP2BQ9P265 1576 aa27.35■■□□□ 1.97
SCAF11-206ENST00000474828 KIF13AQ9H1H9 1805 aa27.32■■□□□ 1.96
SCAF11-206ENST00000474828 WDR7Q9Y4E6 1490 aa27.32■■□□□ 1.96
SCAF11-206ENST00000474828 GLI2P10070 1586 aa27.31■■□□□ 1.96
SCAF11-206ENST00000474828 CASKIN1Q8WXD9 1431 aa27.31■■□□□ 1.96
SCAF11-206ENST00000474828 HECW1Q76N89 1606 aa27.28■■□□□ 1.96
SCAF11-206ENST00000474828 EPRSP07814 1512 aaKnown RBP27.27■■□□□ 1.96
SCAF11-206ENST00000474828 FYCO1Q9BQS8 1478 aa27.24■■□□□ 1.95
SCAF11-206ENST00000474828 PCF11O94913 1555 aaKnown RBP27.23■■□□□ 1.95
SCAF11-206ENST00000474828 FAM69CQ0P6D2 419 aa27.22■■□□□ 1.95
SCAF11-206ENST00000474828 CDK13Q14004 1512 aaKnown RBP27.17■■□□□ 1.94
SCAF11-206ENST00000474828 LRRIQ1Q96JM4 1722 aa27.16■■□□□ 1.94
SCAF11-206ENST00000474828 CCDC18Q5T9S5 1454 aa27.16■■□□□ 1.94
SCAF11-206ENST00000474828 ARID3CA6NKF2 412 aa27.15■■□□□ 1.94
SCAF11-206ENST00000474828 MAP3K4Q9Y6R4 1608 aa27.15■■□□□ 1.94
SCAF11-206ENST00000474828 PLEKHD1A6NEE1 506 aa27.11■■□□□ 1.93
SCAF11-206ENST00000474828 VPS8Q8N3P4 1428 aa27.1■■□□□ 1.93
SCAF11-206ENST00000474828 ABCA9Q8IUA7 1624 aa27.08■■□□□ 1.93
SCAF11-206ENST00000474828 CFAP43Q8NDM7 1665 aa27.08■■□□□ 1.92
SCAF11-206ENST00000474828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.07■■□□□ 1.92
SCAF11-206ENST00000474828 HNRNPUL2Q1KMD3 747 aaKnown RBP27.07■■□□□ 1.92
SCAF11-206ENST00000474828 PPRC1Q5VV67 1664 aaKnown RBP27.07■■□□□ 1.92
SCAF11-206ENST00000474828 CDK11AQ9UQ88 783 aaPredicted RBP27.05■■□□□ 1.92
SCAF11-206ENST00000474828 MAGI3Q5TCQ9 1506 aa27.05■■□□□ 1.92
SCAF11-206ENST00000474828 KCNH8Q96L42 1107 aa27.04■■□□□ 1.92
SCAF11-206ENST00000474828 TROQ12816 1431 aaPredicted RBP27.04■■□□□ 1.92
SCAF11-206ENST00000474828 ATP1B4Q9UN42 357 aaPredicted RBP27.03■■□□□ 1.92
SCAF11-206ENST00000474828 CD109Q6YHK3 1445 aa27.01■■□□□ 1.91
SCAF11-206ENST00000474828 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.98■■□□□ 1.911e-6■■■■□ 23.9
SCAF11-206ENST00000474828 TEX14Q8IWB6 1497 aa26.96■■□□□ 1.91
SCAF11-206ENST00000474828 MAP3K1Q13233 1512 aa26.95■■□□□ 1.91
SCAF11-206ENST00000474828 TSPOAP1O95153 1857 aa26.92■■□□□ 1.9
SCAF11-206ENST00000474828 TTC37Q6PGP7 1564 aa26.92■■□□□ 1.9
SCAF11-206ENST00000474828 KIF14Q15058 1648 aa26.9■■□□□ 1.9
SCAF11-206ENST00000474828 ARAP3Q8WWN8 1544 aa26.89■■□□□ 1.89
SCAF11-206ENST00000474828 TIAM1Q13009 1591 aa26.88■■□□□ 1.89
SCAF11-206ENST00000474828 PHLDB1Q86UU1 1377 aa26.87■■□□□ 1.89
SCAF11-206ENST00000474828 PLCH2O75038 1416 aa26.86■■□□□ 1.89
SCAF11-206ENST00000474828 NEO1Q92859 1461 aa26.85■■□□□ 1.89
SCAF11-206ENST00000474828 EHBP1L1Q8N3D4 1523 aa26.83■■□□□ 1.89
SCAF11-206ENST00000474828 COL17A1Q9UMD9 1497 aaPredicted RBP26.81■■□□□ 1.88
SCAF11-206ENST00000474828 MTUS2Q5JR59 1369 aa26.8■■□□□ 1.88
SCAF11-206ENST00000474828 KDM6BO15054 1643 aa26.79■■□□□ 1.88
SCAF11-206ENST00000474828 LRRC9Q6ZRR7 1453 aa26.78■■□□□ 1.88
SCAF11-206ENST00000474828 MYO5CQ9NQX4 1742 aa26.76■■□□□ 1.88
SCAF11-206ENST00000474828 FANCAO15360 1455 aa26.76■■□□□ 1.87
SCAF11-206ENST00000474828 CFAP74Q9C0B2 1584 aa26.75■■□□□ 1.87
SCAF11-206ENST00000474828 PREX2Q70Z35 1606 aa26.72■■□□□ 1.87
SCAF11-206ENST00000474828 GPATCH8Q9UKJ3 1502 aaKnown RBP26.72■■□□□ 1.87
SCAF11-206ENST00000474828 AKNAQ7Z591 1439 aa26.72■■□□□ 1.87
SCAF11-206ENST00000474828 CDC42BPAQ5VT25 1732 aa26.7■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms