RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 CEP170Q5SW79 1584 aa11.97□□□□□ -0.49
LIMD1-204ENST00000474665 NPM1P06748 294 aaKnown RBP eCLIP11.94□□□□□ -0.5
LIMD1-204ENST00000474665 CHIC1Q5VXU3 224 aa11.94□□□□□ -0.5
LIMD1-204ENST00000474665 ABCA5Q8WWZ7 1642 aa11.93□□□□□ -0.5
LIMD1-204ENST00000474665 DIP2BQ9P265 1576 aa11.92□□□□□ -0.5
LIMD1-204ENST00000474665 TSPOAP1O95153 1857 aa11.92□□□□□ -0.5
LIMD1-204ENST00000474665 PBRM1Q86U86 1689 aa11.87□□□□□ -0.51
LIMD1-204ENST00000474665 MAPKBP1O60336 1514 aa11.87□□□□□ -0.51
LIMD1-204ENST00000474665 DISP3Q9P2K9 1392 aa11.87□□□□□ -0.51
LIMD1-204ENST00000474665 GRIN2AQ12879 1464 aa11.87□□□□□ -0.51
LIMD1-204ENST00000474665 RUSC2Q8N2Y8 1516 aa11.86□□□□□ -0.51
LIMD1-204ENST00000474665 NUP160Q12769 1436 aa11.86□□□□□ -0.51
LIMD1-204ENST00000474665 PRG4Q92954 1404 aaPredicted RBP11.86□□□□□ -0.51
LIMD1-204ENST00000474665 SHROOM2Q13796 1616 aa11.85□□□□□ -0.51
LIMD1-204ENST00000474665 IGF1RP08069 1367 aa11.83□□□□□ -0.52
LIMD1-204ENST00000474665 KIF27Q86VH2 1401 aa11.83□□□□□ -0.52
LIMD1-204ENST00000474665 ERICH3Q5RHP9 1530 aa11.82□□□□□ -0.52
LIMD1-204ENST00000474665 JPH4Q96JJ6 628 aa11.8□□□□□ -0.52
LIMD1-204ENST00000474665 ADAMTS12P58397 1594 aa11.79□□□□□ -0.52
LIMD1-204ENST00000474665 COL17A1Q9UMD9 1497 aaPredicted RBP11.79□□□□□ -0.52
LIMD1-204ENST00000474665 ADCY10Q96PN6 1610 aa11.78□□□□□ -0.52
LIMD1-204ENST00000474665 FHAD1B1AJZ9 1412 aa11.77□□□□□ -0.53
LIMD1-204ENST00000474665 CARMIL1Q5VZK9 1371 aa11.73□□□□□ -0.53
LIMD1-204ENST00000474665 CUL7Q14999 1698 aa11.72□□□□□ -0.53
LIMD1-204ENST00000474665 PPRC1Q5VV67 1664 aaKnown RBP11.71□□□□□ -0.53
LIMD1-204ENST00000474665 PRXQ9BXM0 1461 aa11.7□□□□□ -0.54
LIMD1-204ENST00000474665 FAM9AQ8IZU1 332 aaPredicted RBP11.69□□□□□ -0.54
LIMD1-204ENST00000474665 CSRNP3Q8WYN3 585 aa11.69□□□□□ -0.54
LIMD1-204ENST00000474665 EEA1Q15075 1411 aa11.69□□□□□ -0.54
LIMD1-204ENST00000474665 CERKQ8TCT0 537 aa11.68□□□□□ -0.54
LIMD1-204ENST00000474665 RAPGEF2Q9Y4G8 1499 aa11.66□□□□□ -0.54
LIMD1-204ENST00000474665 TTBK1Q5TCY1 1321 aaPredicted RBP11.65□□□□□ -0.54
LIMD1-204ENST00000474665 ASXL2Q76L83 1435 aa11.63□□□□□ -0.55
LIMD1-204ENST00000474665 GLI2P10070 1586 aa11.62□□□□□ -0.55
LIMD1-204ENST00000474665 SPATA31D1Q6ZQQ2 1576 aa11.61□□□□□ -0.55
LIMD1-204ENST00000474665 KIF21BO75037 1637 aa11.6□□□□□ -0.55
LIMD1-204ENST00000474665 KIAA0586Q9BVV6 1533 aa11.6□□□□□ -0.55
LIMD1-204ENST00000474665 PLB1Q6P1J6 1458 aa11.59□□□□□ -0.55
LIMD1-204ENST00000474665 HSPA2P54652 639 aa11.58□□□□□ -0.56
LIMD1-204ENST00000474665 PTPRMP28827 1452 aa11.57□□□□□ -0.56
LIMD1-204ENST00000474665 TEX14Q8IWB6 1497 aa11.57□□□□□ -0.56
LIMD1-204ENST00000474665 ABCC2Q92887 1545 aa11.56□□□□□ -0.56
LIMD1-204ENST00000474665 PTPRGP23470 1445 aa11.56□□□□□ -0.56
LIMD1-204ENST00000474665 PCF11O94913 1555 aaKnown RBP11.55□□□□□ -0.56
LIMD1-204ENST00000474665 IQGAP2Q13576 1575 aa11.54□□□□□ -0.56
LIMD1-204ENST00000474665 MAP3K4Q9Y6R4 1608 aa11.54□□□□□ -0.56
LIMD1-204ENST00000474665 CTTNBP2Q8WZ74 1663 aa11.54□□□□□ -0.56
LIMD1-204ENST00000474665 EPRSP07814 1512 aaKnown RBP11.54□□□□□ -0.56
LIMD1-204ENST00000474665 EHMT2Q96KQ7 1210 aa11.53□□□□□ -0.56
LIMD1-204ENST00000474665 GOLGA3Q08378 1498 aa11.51□□□□□ -0.57
LIMD1-204ENST00000474665 UGGT2Q9NYU1 1516 aa11.5□□□□□ -0.57
LIMD1-204ENST00000474665 DISP1Q96F81 1524 aa11.5□□□□□ -0.57
LIMD1-204ENST00000474665 ADAMTSL3P82987 1691 aa11.48□□□□□ -0.57
LIMD1-204ENST00000474665 LOC105371045A0A1W2PR82 267 aa11.47□□□□□ -0.57
LIMD1-204ENST00000474665 PLPPR3Q6T4P5 718 aa11.47□□□□□ -0.57
LIMD1-204ENST00000474665 UBTFP17480 764 aaKnown RBP11.46□□□□□ -0.57
LIMD1-204ENST00000474665 TNIKQ9UKE5 1360 aa11.45□□□□□ -0.58
LIMD1-204ENST00000474665 KIAA0556O60303 1618 aa11.44□□□□□ -0.58
LIMD1-204ENST00000474665 SAMD9Q5K651 1589 aa11.43□□□□□ -0.58
LIMD1-204ENST00000474665 UHRF1BP1LA0JNW5 1464 aa11.43□□□□□ -0.58
LIMD1-204ENST00000474665 UACAQ9BZF9 1416 aa11.43□□□□□ -0.58
LIMD1-204ENST00000474665 CD109Q6YHK3 1445 aa11.42□□□□□ -0.58
LIMD1-204ENST00000474665 ARID4BQ4LE39 1312 aaPredicted RBP11.41□□□□□ -0.58
LIMD1-204ENST00000474665 RANGAP1P46060 587 aaPredicted RBP11.41□□□□□ -0.58
LIMD1-204ENST00000474665 CARMIL2Q6F5E8 1435 aa11.41□□□□□ -0.58
LIMD1-204ENST00000474665 KDM5BQ9UGL1 1544 aa11.4□□□□□ -0.58
LIMD1-204ENST00000474665 MADDQ8WXG6 1647 aa11.4□□□□□ -0.58
LIMD1-204ENST00000474665 KCNH8Q96L42 1107 aa11.4□□□□□ -0.58
LIMD1-204ENST00000474665 P3H3Q8IVL6 736 aa11.39□□□□□ -0.59
LIMD1-204ENST00000474665 MAGI3Q5TCQ9 1506 aa11.39□□□□□ -0.59
LIMD1-204ENST00000474665 ARHGAP35Q9NRY4 1499 aa11.38□□□□□ -0.59
LIMD1-204ENST00000474665 ZCCHC11Q5TAX3 1644 aaKnown RBP11.37□□□□□ -0.59
LIMD1-204ENST00000474665 FHOD3Q2V2M9 1422 aa11.36□□□□□ -0.59
LIMD1-204ENST00000474665 EFCAB5A4FU69 1503 aa11.36□□□□□ -0.59
LIMD1-204ENST00000474665 BCORL1Q5H9F3 1711 aa11.36□□□□□ -0.59
LIMD1-204ENST00000474665 RAPGEF3O95398 923 aa11.35□□□□□ -0.59
LIMD1-204ENST00000474665 WDR7Q9Y4E6 1490 aa11.35□□□□□ -0.59
LIMD1-204ENST00000474665 RIMS1Q86UR5 1692 aaKnown RBP11.34□□□□□ -0.59
LIMD1-204ENST00000474665 ARAP3Q8WWN8 1544 aa11.33□□□□□ -0.6
LIMD1-204ENST00000474665 CLIP1P30622 1438 aa11.33□□□□□ -0.6
LIMD1-204ENST00000474665 CEP162Q5TB80 1403 aa11.33□□□□□ -0.6
LIMD1-204ENST00000474665 ABCA8O94911 1581 aa11.33□□□□□ -0.6
LIMD1-204ENST00000474665 CFAP43Q8NDM7 1665 aa11.3□□□□□ -0.6
LIMD1-204ENST00000474665 DMRT2Q9Y5R5 561 aa11.3□□□□□ -0.6
LIMD1-204ENST00000474665 YEATS2Q9ULM3 1422 aa11.28□□□□□ -0.6
LIMD1-204ENST00000474665 RAPGEF6Q8TEU7 1601 aa11.27□□□□□ -0.61
LIMD1-204ENST00000474665 NUP153P49790 1475 aaKnown RBP11.26□□□□□ -0.61
LIMD1-204ENST00000474665 FMN1Q68DA7 1419 aa11.25□□□□□ -0.61
LIMD1-204ENST00000474665 ATP10BO94823 1461 aa11.25□□□□□ -0.61
LIMD1-204ENST00000474665 MLECQ14165 292 aa11.24□□□□□ -0.61
LIMD1-204ENST00000474665 LRRIQ1Q96JM4 1722 aa11.23□□□□□ -0.61
LIMD1-204ENST00000474665 STRCQ7RTU9 1775 aa11.23□□□□□ -0.61
LIMD1-204ENST00000474665 ARID3CA6NKF2 412 aa11.23□□□□□ -0.61
LIMD1-204ENST00000474665 UBAP1LF5GYI3 381 aa11.22□□□□□ -0.61
LIMD1-204ENST00000474665 LTBP4Q8N2S1 1624 aa11.21□□□□□ -0.61
LIMD1-204ENST00000474665 CASKIN1Q8WXD9 1431 aa11.21□□□□□ -0.61
LIMD1-204ENST00000474665 CEBPAP49715 358 aaPredicted RBP11.21□□□□□ -0.61
LIMD1-204ENST00000474665 CDK13Q14004 1512 aaKnown RBP11.19□□□□□ -0.62
LIMD1-204ENST00000474665 PHLDB1Q86UU1 1377 aa11.19□□□□□ -0.62
LIMD1-204ENST00000474665 MED1Q15648 1581 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms