RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 JPH4Q96JJ6 628 aa32.24■■■□□ 2.75
COL7A1-209ENST00000474432 PRG4Q92954 1404 aaPredicted RBP32.23■■■□□ 2.75
COL7A1-209ENST00000474432 KIAA0586Q9BVV6 1533 aa32.14■■■□□ 2.74
COL7A1-209ENST00000474432 CARMIL1Q5VZK9 1371 aa32.12■■■□□ 2.73
COL7A1-209ENST00000474432 ADCY10Q96PN6 1610 aa31.87■■■□□ 2.69
COL7A1-209ENST00000474432 RAPGEF2Q9Y4G8 1499 aa31.86■■■□□ 2.69
COL7A1-209ENST00000474432 IQGAP2Q13576 1575 aa31.85■■■□□ 2.69
COL7A1-209ENST00000474432 KIF13AQ9H1H9 1805 aa31.82■■■□□ 2.68
COL7A1-209ENST00000474432 MAPKBP1O60336 1514 aa31.75■■■□□ 2.67
COL7A1-209ENST00000474432 DISP1Q96F81 1524 aa31.75■■■□□ 2.67
COL7A1-209ENST00000474432 PTPRGP23470 1445 aa31.75■■■□□ 2.67
COL7A1-209ENST00000474432 CARMIL2Q6F5E8 1435 aa31.73■■■□□ 2.67
COL7A1-209ENST00000474432 TNIKQ9UKE5 1360 aa31.72■■■□□ 2.67
COL7A1-209ENST00000474432 UGGT2Q9NYU1 1516 aa31.7■■■□□ 2.67
COL7A1-209ENST00000474432 NPM1P06748 294 aaKnown RBP eCLIP31.68■■■□□ 2.66
COL7A1-209ENST00000474432 ABCC10Q5T3U5 1492 aa31.67■■■□□ 2.66
COL7A1-209ENST00000474432 PRXQ9BXM0 1461 aa31.67■■■□□ 2.66
COL7A1-209ENST00000474432 TTBK1Q5TCY1 1321 aaPredicted RBP31.62■■■□□ 2.65
COL7A1-209ENST00000474432 CTTNBP2Q8WZ74 1663 aa31.62■■■□□ 2.65
COL7A1-209ENST00000474432 DIP2BQ9P265 1576 aa31.62■■■□□ 2.65
COL7A1-209ENST00000474432 KIAA0556O60303 1618 aa31.59■■■□□ 2.65
COL7A1-209ENST00000474432 FAM69CQ0P6D2 419 aa31.58■■■□□ 2.65
COL7A1-209ENST00000474432 ABCC2Q92887 1545 aa31.56■■■□□ 2.64
COL7A1-209ENST00000474432 UHRF1BP1LA0JNW5 1464 aa31.56■■■□□ 2.64
COL7A1-209ENST00000474432 UACAQ9BZF9 1416 aa31.53■■■□□ 2.64
COL7A1-209ENST00000474432 CSRNP3Q8WYN3 585 aa31.44■■■□□ 2.62
COL7A1-209ENST00000474432 KDM5BQ9UGL1 1544 aa31.43■■■□□ 2.62
COL7A1-209ENST00000474432 ASXL2Q76L83 1435 aa31.41■■■□□ 2.62
COL7A1-209ENST00000474432 GOLGA3Q08378 1498 aa31.4■■■□□ 2.62
COL7A1-209ENST00000474432 PLB1Q6P1J6 1458 aa31.38■■■□□ 2.61
COL7A1-209ENST00000474432 TSPOAP1O95153 1857 aa31.35■■■□□ 2.61
COL7A1-209ENST00000474432 ZCCHC11Q5TAX3 1644 aaKnown RBP31.35■■■□□ 2.61
COL7A1-209ENST00000474432 EEA1Q15075 1411 aa31.34■■■□□ 2.61
COL7A1-209ENST00000474432 GLI2P10070 1586 aa31.33■■■□□ 2.61
COL7A1-209ENST00000474432 ABCA8O94911 1581 aa31.31■■■□□ 2.6
COL7A1-209ENST00000474432 PPRC1Q5VV67 1664 aaKnown RBP31.27■■■□□ 2.6
COL7A1-209ENST00000474432 EPRSP07814 1512 aaKnown RBP31.25■■■□□ 2.59
COL7A1-209ENST00000474432 SAMD9Q5K651 1589 aa31.22■■■□□ 2.59
COL7A1-209ENST00000474432 KDM6BO15054 1643 aa31.21■■■□□ 2.59
COL7A1-209ENST00000474432 FAM9AQ8IZU1 332 aaPredicted RBP31.2■■■□□ 2.59
COL7A1-209ENST00000474432 MAP3K4Q9Y6R4 1608 aa31.18■■■□□ 2.58
COL7A1-209ENST00000474432 CHIC1Q5VXU3 224 aa31.18■■■□□ 2.58
COL7A1-209ENST00000474432 P3H3Q8IVL6 736 aa31.17■■■□□ 2.58
COL7A1-209ENST00000474432 WDR7Q9Y4E6 1490 aa31.15■■■□□ 2.58
COL7A1-209ENST00000474432 KIF21BO75037 1637 aa31.13■■■□□ 2.57
COL7A1-209ENST00000474432 ATP10BO94823 1461 aa31.04■■■□□ 2.56
COL7A1-209ENST00000474432 COL17A1Q9UMD9 1497 aaPredicted RBP31.04■■■□□ 2.56
COL7A1-209ENST00000474432 AEBP2Q6ZN18 517 aaPredicted RBP31.02■■■□□ 2.56
COL7A1-209ENST00000474432 RAPGEF6Q8TEU7 1601 aa30.99■■■□□ 2.55
COL7A1-209ENST00000474432 TEX14Q8IWB6 1497 aa30.97■■■□□ 2.55
COL7A1-209ENST00000474432 ARID3CA6NKF2 412 aa30.97■■■□□ 2.55
COL7A1-209ENST00000474432 RANGAP1P46060 587 aaPredicted RBP30.97■■■□□ 2.55
COL7A1-209ENST00000474432 FHOD3Q2V2M9 1422 aa30.97■■■□□ 2.55
COL7A1-209ENST00000474432 CFAP43Q8NDM7 1665 aa30.97■■■□□ 2.55
COL7A1-209ENST00000474432 KCNH8Q96L42 1107 aa30.96■■■□□ 2.55
COL7A1-209ENST00000474432 MAGI3Q5TCQ9 1506 aa30.93■■■□□ 2.54
COL7A1-209ENST00000474432 CD109Q6YHK3 1445 aa30.92■■■□□ 2.54
COL7A1-209ENST00000474432 NUP153P49790 1475 aaKnown RBP30.91■■■□□ 2.54
COL7A1-209ENST00000474432 EFCAB5A4FU69 1503 aa30.9■■■□□ 2.54
COL7A1-209ENST00000474432 KDM4FA0A1W2PPD8 638 aa30.83■■■□□ 2.53
COL7A1-209ENST00000474432 EHMT2Q96KQ7 1210 aa30.83■■■□□ 2.53
COL7A1-209ENST00000474432 ABCA9Q8IUA7 1624 aa30.81■■■□□ 2.52
COL7A1-209ENST00000474432 UBTFP17480 764 aaKnown RBP30.78■■■□□ 2.52
COL7A1-209ENST00000474432 ARHGAP35Q9NRY4 1499 aa30.73■■■□□ 2.51
COL7A1-209ENST00000474432 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.71■■■□□ 2.51
COL7A1-209ENST00000474432 HNRNPUL2Q1KMD3 747 aaKnown RBP30.71■■■□□ 2.51
COL7A1-209ENST00000474432 ARAP3Q8WWN8 1544 aa30.68■■■□□ 2.5
COL7A1-209ENST00000474432 CDK13Q14004 1512 aaKnown RBP30.63■■■□□ 2.49
COL7A1-209ENST00000474432 PLEKHD1A6NEE1 506 aa30.62■■■□□ 2.49
COL7A1-209ENST00000474432 ADGRL1O94910 1474 aa30.62■■■□□ 2.49
COL7A1-209ENST00000474432 FMN1Q68DA7 1419 aa30.59■■■□□ 2.49
COL7A1-209ENST00000474432 PHLDB1Q86UU1 1377 aa30.58■■■□□ 2.49
COL7A1-209ENST00000474432 NEO1Q92859 1461 aa30.57■■■□□ 2.48
COL7A1-209ENST00000474432 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.57■■■□□ 2.48
COL7A1-209ENST00000474432 HECW1Q76N89 1606 aa30.53■■■□□ 2.48
COL7A1-209ENST00000474432 TTC37Q6PGP7 1564 aa30.53■■■□□ 2.48
COL7A1-209ENST00000474432 FRMPD1Q5SYB0 1578 aa30.49■■■□□ 2.47
COL7A1-209ENST00000474432 LRRIQ1Q96JM4 1722 aa30.49■■■□□ 2.47
COL7A1-209ENST00000474432 RAPGEF3O95398 923 aa30.48■■■□□ 2.47
COL7A1-209ENST00000474432 ATP1B4Q9UN42 357 aaPredicted RBP30.43■■■□□ 2.46
COL7A1-209ENST00000474432 FANCAO15360 1455 aa30.42■■■□□ 2.46
COL7A1-209ENST00000474432 AKNAQ7Z591 1439 aa30.41■■■□□ 2.46
COL7A1-209ENST00000474432 RICTORQ6R327 1708 aa30.39■■■□□ 2.46
COL7A1-209ENST00000474432 CFAP74Q9C0B2 1584 aa30.37■■■□□ 2.45
COL7A1-209ENST00000474432 PCF11O94913 1555 aaKnown RBP30.37■■■□□ 2.45
COL7A1-209ENST00000474432 KIF14Q15058 1648 aa30.36■■■□□ 2.45
COL7A1-209ENST00000474432 PLCH2O75038 1416 aa30.36■■■□□ 2.45
COL7A1-209ENST00000474432 CASKIN1Q8WXD9 1431 aa30.35■■■□□ 2.45
COL7A1-209ENST00000474432 DENND4BO75064 1496 aaPredicted RBP30.35■■■□□ 2.45
COL7A1-209ENST00000474432 TROQ12816 1431 aaPredicted RBP30.33■■■□□ 2.45
COL7A1-209ENST00000474432 CDK11AQ9UQ88 783 aaPredicted RBP30.31■■■□□ 2.44
COL7A1-209ENST00000474432 MYO5CQ9NQX4 1742 aa30.29■■■□□ 2.44
COL7A1-209ENST00000474432 CLIP1P30622 1438 aa30.29■■■□□ 2.44
COL7A1-209ENST00000474432 ZMYM4Q5VZL5 1548 aa30.25■■■□□ 2.43
COL7A1-209ENST00000474432 ARHGEF40Q8TER5 1519 aa30.25■■■□□ 2.43
COL7A1-209ENST00000474432 ADAMTSL3P82987 1691 aa30.24■■■□□ 2.43
COL7A1-209ENST00000474432 CCDC18Q5T9S5 1454 aa30.23■■■□□ 2.43
COL7A1-209ENST00000474432 FYCO1Q9BQS8 1478 aa30.22■■■□□ 2.43
COL7A1-209ENST00000474432 SCAPERQ9BY12 1400 aa30.22■■■□□ 2.43
COL7A1-209ENST00000474432 POGZQ7Z3K3 1410 aa30.19■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms