RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 RUSC2Q8N2Y8 1516 aa35.25■■■■□ 3.23
PDLIM4-206ENST00000474421 PRG4Q92954 1404 aaPredicted RBP35.24■■■■□ 3.23
PDLIM4-206ENST00000474421 KIAA0586Q9BVV6 1533 aa35.12■■■■□ 3.21
PDLIM4-206ENST00000474421 CARMIL1Q5VZK9 1371 aa35.1■■■■□ 3.21
PDLIM4-206ENST00000474421 NPM1P06748 294 aaKnown RBP eCLIP34.87■■■■□ 3.17
PDLIM4-206ENST00000474421 IQGAP2Q13576 1575 aa34.83■■■■□ 3.17
PDLIM4-206ENST00000474421 CARMIL2Q6F5E8 1435 aa34.81■■■■□ 3.16
PDLIM4-206ENST00000474421 RAPGEF2Q9Y4G8 1499 aa34.81■■■■□ 3.16
PDLIM4-206ENST00000474421 ADCY10Q96PN6 1610 aa34.79■■■■□ 3.16
PDLIM4-206ENST00000474421 KIF13AQ9H1H9 1805 aa34.76■■■■□ 3.15
PDLIM4-206ENST00000474421 PTPRGP23470 1445 aa34.75■■■■□ 3.15
PDLIM4-206ENST00000474421 MAPKBP1O60336 1514 aa34.75■■■■□ 3.15
PDLIM4-206ENST00000474421 TNIKQ9UKE5 1360 aa34.72■■■■□ 3.15
PDLIM4-206ENST00000474421 ABCC10Q5T3U5 1492 aa34.67■■■■□ 3.14
PDLIM4-206ENST00000474421 FAM69CQ0P6D2 419 aa34.62■■■■□ 3.13
PDLIM4-206ENST00000474421 UGGT2Q9NYU1 1516 aa34.61■■■■□ 3.13
PDLIM4-206ENST00000474421 TTBK1Q5TCY1 1321 aaPredicted RBP34.6■■■■□ 3.13
PDLIM4-206ENST00000474421 DISP1Q96F81 1524 aa34.6■■■■□ 3.13
PDLIM4-206ENST00000474421 DIP2BQ9P265 1576 aa34.57■■■■□ 3.13
PDLIM4-206ENST00000474421 ABCC2Q92887 1545 aa34.53■■■■□ 3.12
PDLIM4-206ENST00000474421 CTTNBP2Q8WZ74 1663 aa34.52■■■■□ 3.12
PDLIM4-206ENST00000474421 UHRF1BP1LA0JNW5 1464 aa34.52■■■■□ 3.12
PDLIM4-206ENST00000474421 UACAQ9BZF9 1416 aa34.49■■■■□ 3.11
PDLIM4-206ENST00000474421 PRXQ9BXM0 1461 aa34.49■■■■□ 3.11
PDLIM4-206ENST00000474421 KIAA0556O60303 1618 aa34.48■■■■□ 3.11
PDLIM4-206ENST00000474421 GOLGA3Q08378 1498 aa34.4■■■■□ 3.1
PDLIM4-206ENST00000474421 PLB1Q6P1J6 1458 aa34.4■■■■□ 3.1
PDLIM4-206ENST00000474421 ASXL2Q76L83 1435 aa34.37■■■■□ 3.09
PDLIM4-206ENST00000474421 KDM5BQ9UGL1 1544 aa34.34■■■■□ 3.09
PDLIM4-206ENST00000474421 TSPOAP1O95153 1857 aa34.33■■■■□ 3.09
PDLIM4-206ENST00000474421 CSRNP3Q8WYN3 585 aa34.31■■■■□ 3.08
PDLIM4-206ENST00000474421 AEBP2Q6ZN18 517 aaPredicted RBP34.29■■■■□ 3.08
PDLIM4-206ENST00000474421 GLI2P10070 1586 aa34.28■■■■□ 3.08
PDLIM4-206ENST00000474421 EEA1Q15075 1411 aa34.27■■■■□ 3.08
PDLIM4-206ENST00000474421 ZCCHC11Q5TAX3 1644 aaKnown RBP34.25■■■■□ 3.07
PDLIM4-206ENST00000474421 KDM6BO15054 1643 aa34.22■■■■□ 3.07
PDLIM4-206ENST00000474421 FAM9AQ8IZU1 332 aaPredicted RBP34.18■■■■□ 3.06
PDLIM4-206ENST00000474421 EPRSP07814 1512 aaKnown RBP34.16■■■■□ 3.06
PDLIM4-206ENST00000474421 ABCA8O94911 1581 aa34.15■■■■□ 3.06
PDLIM4-206ENST00000474421 PPRC1Q5VV67 1664 aaKnown RBP34.1■■■■□ 3.05
PDLIM4-206ENST00000474421 WDR7Q9Y4E6 1490 aa34.1■■■■□ 3.05
PDLIM4-206ENST00000474421 MAP3K4Q9Y6R4 1608 aa34.08■■■■□ 3.05
PDLIM4-206ENST00000474421 SAMD9Q5K651 1589 aa34.02■■■■□ 3.04
PDLIM4-206ENST00000474421 TEX14Q8IWB6 1497 aa34.02■■■■□ 3.04
PDLIM4-206ENST00000474421 P3H3Q8IVL6 736 aa34.01■■■■□ 3.03
PDLIM4-206ENST00000474421 KIF21BO75037 1637 aa33.93■■■■□ 3.02
PDLIM4-206ENST00000474421 CFAP43Q8NDM7 1665 aa33.9■■■■□ 3.02
PDLIM4-206ENST00000474421 KCNH8Q96L42 1107 aa33.9■■■■□ 3.02
PDLIM4-206ENST00000474421 CD109Q6YHK3 1445 aa33.87■■■■□ 3.01
PDLIM4-206ENST00000474421 ATP10BO94823 1461 aa33.86■■■■□ 3.01
PDLIM4-206ENST00000474421 RAPGEF6Q8TEU7 1601 aa33.85■■■■□ 3.01
PDLIM4-206ENST00000474421 CHIC1Q5VXU3 224 aa33.84■■■■□ 3.01
PDLIM4-206ENST00000474421 MAGI3Q5TCQ9 1506 aa33.84■■■■□ 3.01
PDLIM4-206ENST00000474421 RANGAP1P46060 587 aaPredicted RBP33.82■■■■□ 3
PDLIM4-206ENST00000474421 COL17A1Q9UMD9 1497 aaPredicted RBP33.82■■■■□ 3
PDLIM4-206ENST00000474421 ARID3CA6NKF2 412 aa33.81■■■■□ 3
PDLIM4-206ENST00000474421 EFCAB5A4FU69 1503 aa33.78■■■■□ 3
PDLIM4-206ENST00000474421 FHOD3Q2V2M9 1422 aa33.77■■■■□ 3
PDLIM4-206ENST00000474421 KDM4FA0A1W2PPD8 638 aa33.72■■■□□ 2.99
PDLIM4-206ENST00000474421 NUP153P49790 1475 aaKnown RBP33.7■■■□□ 2.99
PDLIM4-206ENST00000474421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.7■■■□□ 2.99
PDLIM4-206ENST00000474421 HNRNPUL2Q1KMD3 747 aaKnown RBP33.7■■■□□ 2.99
PDLIM4-206ENST00000474421 UBTFP17480 764 aaKnown RBP33.67■■■□□ 2.98
PDLIM4-206ENST00000474421 ABCA9Q8IUA7 1624 aa33.67■■■□□ 2.98
PDLIM4-206ENST00000474421 PHLDB1Q86UU1 1377 aa33.6■■■□□ 2.97
PDLIM4-206ENST00000474421 ARAP3Q8WWN8 1544 aa33.58■■■□□ 2.97
PDLIM4-206ENST00000474421 PLEKHD1A6NEE1 506 aa33.56■■■□□ 2.96
PDLIM4-206ENST00000474421 EHMT2Q96KQ7 1210 aa33.56■■■□□ 2.96
PDLIM4-206ENST00000474421 ADGRL1O94910 1474 aa33.55■■■□□ 2.96
PDLIM4-206ENST00000474421 NEO1Q92859 1461 aa33.5■■■□□ 2.95
PDLIM4-206ENST00000474421 FMN1Q68DA7 1419 aa33.48■■■□□ 2.95
PDLIM4-206ENST00000474421 ARHGAP35Q9NRY4 1499 aa33.44■■■□□ 2.94
PDLIM4-206ENST00000474421 HECW1Q76N89 1606 aa33.39■■■□□ 2.93
PDLIM4-206ENST00000474421 CDK13Q14004 1512 aaKnown RBP33.38■■■□□ 2.93
PDLIM4-206ENST00000474421 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.35■■■□□ 2.93
PDLIM4-206ENST00000474421 ATP1B4Q9UN42 357 aaPredicted RBP33.34■■■□□ 2.93
PDLIM4-206ENST00000474421 CFAP74Q9C0B2 1584 aa33.33■■■□□ 2.93
PDLIM4-206ENST00000474421 RAPGEF3O95398 923 aa33.32■■■□□ 2.92
PDLIM4-206ENST00000474421 CDK11AQ9UQ88 783 aaPredicted RBP33.3■■■□□ 2.92
PDLIM4-206ENST00000474421 TTC37Q6PGP7 1564 aa33.29■■■□□ 2.92
PDLIM4-206ENST00000474421 FANCAO15360 1455 aa33.28■■■□□ 2.92
PDLIM4-206ENST00000474421 AKNAQ7Z591 1439 aa33.27■■■□□ 2.92
PDLIM4-206ENST00000474421 FRMPD1Q5SYB0 1578 aa33.25■■■□□ 2.91
PDLIM4-206ENST00000474421 DENND4BO75064 1496 aaPredicted RBP33.24■■■□□ 2.91
PDLIM4-206ENST00000474421 RICTORQ6R327 1708 aa33.19■■■□□ 2.9
PDLIM4-206ENST00000474421 PLCH2O75038 1416 aa33.18■■■□□ 2.9
PDLIM4-206ENST00000474421 TROQ12816 1431 aaPredicted RBP33.14■■■□□ 2.9
PDLIM4-206ENST00000474421 CLIP1P30622 1438 aa33.13■■■□□ 2.89
PDLIM4-206ENST00000474421 KIF14Q15058 1648 aa33.13■■■□□ 2.89
PDLIM4-206ENST00000474421 MYO5CQ9NQX4 1742 aa33.12■■■□□ 2.89
PDLIM4-206ENST00000474421 CASKIN1Q8WXD9 1431 aa33.11■■■□□ 2.89
PDLIM4-206ENST00000474421 ARHGEF40Q8TER5 1519 aa33.11■■■□□ 2.89
PDLIM4-206ENST00000474421 LRRIQ1Q96JM4 1722 aa33.1■■■□□ 2.89
PDLIM4-206ENST00000474421 CCDC18Q5T9S5 1454 aa33.09■■■□□ 2.89
PDLIM4-206ENST00000474421 ZMYM4Q5VZL5 1548 aa33.08■■■□□ 2.89
PDLIM4-206ENST00000474421 EFCAB2Q5VUJ9 269 aa33.07■■■□□ 2.88
PDLIM4-206ENST00000474421 PCF11O94913 1555 aaKnown RBP33.07■■■□□ 2.88
PDLIM4-206ENST00000474421 ADAMTSL3P82987 1691 aa33.06■■■□□ 2.88
PDLIM4-206ENST00000474421 ARID4BQ4LE39 1312 aaPredicted RBP33.05■■■□□ 2.88
PDLIM4-206ENST00000474421 MAGI2Q86UL8 1455 aa33.05■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms