RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 KIAA0586Q9BVV6 1533 aa32.05■■■□□ 2.72
PTCD3-210ENST00000473829 RAPGEF2Q9Y4G8 1499 aa32.03■■■□□ 2.72
PTCD3-210ENST00000473829 PRG4Q92954 1404 aaPredicted RBP32.01■■■□□ 2.72
PTCD3-210ENST00000473829 JPH4Q96JJ6 628 aa32.01■■■□□ 2.71
PTCD3-210ENST00000473829 CHIC1Q5VXU3 224 aa31.96■■■□□ 2.71
PTCD3-210ENST00000473829 PRXQ9BXM0 1461 aa31.94■■■□□ 2.7
PTCD3-210ENST00000473829 IQGAP2Q13576 1575 aa31.91■■■□□ 2.7
PTCD3-210ENST00000473829 EEA1Q15075 1411 aa31.83■■■□□ 2.69
PTCD3-210ENST00000473829 CTTNBP2Q8WZ74 1663 aa31.83■■■□□ 2.69
PTCD3-210ENST00000473829 CSRNP3Q8WYN3 585 aa31.8■■■□□ 2.68
PTCD3-210ENST00000473829 UGGT2Q9NYU1 1516 aa31.73■■■□□ 2.67
PTCD3-210ENST00000473829 FAM9AQ8IZU1 332 aaPredicted RBP31.72■■■□□ 2.67
PTCD3-210ENST00000473829 DISP1Q96F81 1524 aa31.71■■■□□ 2.67
PTCD3-210ENST00000473829 CARMIL2Q6F5E8 1435 aa31.67■■■□□ 2.66
PTCD3-210ENST00000473829 KIAA0556O60303 1618 aa31.64■■■□□ 2.65
PTCD3-210ENST00000473829 ADCY10Q96PN6 1610 aa31.62■■■□□ 2.65
PTCD3-210ENST00000473829 KIF21BO75037 1637 aa31.61■■■□□ 2.65
PTCD3-210ENST00000473829 TNIKQ9UKE5 1360 aa31.6■■■□□ 2.65
PTCD3-210ENST00000473829 PTPRGP23470 1445 aa31.58■■■□□ 2.65
PTCD3-210ENST00000473829 TTBK1Q5TCY1 1321 aaPredicted RBP31.53■■■□□ 2.64
PTCD3-210ENST00000473829 TRHP20396 242 aaPredicted RBP31.51■■■□□ 2.63
PTCD3-210ENST00000473829 GOLGA3Q08378 1498 aa31.48■■■□□ 2.63
PTCD3-210ENST00000473829 SAMD9Q5K651 1589 aa31.4■■■□□ 2.62
PTCD3-210ENST00000473829 UACAQ9BZF9 1416 aa31.39■■■□□ 2.62
PTCD3-210ENST00000473829 UHRF1BP1LA0JNW5 1464 aa31.39■■■□□ 2.62
PTCD3-210ENST00000473829 MAPKBP1O60336 1514 aa31.39■■■□□ 2.61
PTCD3-210ENST00000473829 ABCC2Q92887 1545 aa31.38■■■□□ 2.61
PTCD3-210ENST00000473829 EHMT2Q96KQ7 1210 aa31.35■■■□□ 2.61
PTCD3-210ENST00000473829 KIF13AQ9H1H9 1805 aa31.33■■■□□ 2.61
PTCD3-210ENST00000473829 NPM1P06748 294 aaKnown RBP eCLIP31.33■■■□□ 2.61
PTCD3-210ENST00000473829 PLB1Q6P1J6 1458 aa31.31■■■□□ 2.6
PTCD3-210ENST00000473829 P3H3Q8IVL6 736 aa31.29■■■□□ 2.6
PTCD3-210ENST00000473829 ABCA8O94911 1581 aa31.29■■■□□ 2.6
PTCD3-210ENST00000473829 RANGAP1P46060 587 aaPredicted RBP31.26■■■□□ 2.59
PTCD3-210ENST00000473829 KDM5BQ9UGL1 1544 aa31.25■■■□□ 2.59
PTCD3-210ENST00000473829 DIP2BQ9P265 1576 aa31.24■■■□□ 2.59
PTCD3-210ENST00000473829 ZCCHC11Q5TAX3 1644 aaKnown RBP31.24■■■□□ 2.59
PTCD3-210ENST00000473829 ABCC10Q5T3U5 1492 aa31.23■■■□□ 2.59
PTCD3-210ENST00000473829 UBTFP17480 764 aaKnown RBP31.22■■■□□ 2.59
PTCD3-210ENST00000473829 EFCAB5A4FU69 1503 aa31.19■■■□□ 2.58
PTCD3-210ENST00000473829 FHOD3Q2V2M9 1422 aa31.19■■■□□ 2.58
PTCD3-210ENST00000473829 ASXL2Q76L83 1435 aa31.16■■■□□ 2.58
PTCD3-210ENST00000473829 FAM69CQ0P6D2 419 aa31.11■■■□□ 2.57
PTCD3-210ENST00000473829 RAPGEF6Q8TEU7 1601 aa31.1■■■□□ 2.57
PTCD3-210ENST00000473829 ARHGAP35Q9NRY4 1499 aa31.06■■■□□ 2.56
PTCD3-210ENST00000473829 GLI2P10070 1586 aa31■■■□□ 2.55
PTCD3-210ENST00000473829 WDR7Q9Y4E6 1490 aa31■■■□□ 2.55
PTCD3-210ENST00000473829 EPRSP07814 1512 aaKnown RBP30.99■■■□□ 2.55
PTCD3-210ENST00000473829 ARID3CA6NKF2 412 aa30.99■■■□□ 2.55
PTCD3-210ENST00000473829 ATP10BO94823 1461 aa30.99■■■□□ 2.55
PTCD3-210ENST00000473829 TSPOAP1O95153 1857 aa30.98■■■□□ 2.55
PTCD3-210ENST00000473829 NUP153P49790 1475 aaKnown RBP30.98■■■□□ 2.55
PTCD3-210ENST00000473829 PPRC1Q5VV67 1664 aaKnown RBP30.92■■■□□ 2.54
PTCD3-210ENST00000473829 MAP3K4Q9Y6R4 1608 aa30.91■■■□□ 2.54
PTCD3-210ENST00000473829 FMN1Q68DA7 1419 aa30.85■■■□□ 2.53
PTCD3-210ENST00000473829 KCNH8Q96L42 1107 aa30.79■■■□□ 2.52
PTCD3-210ENST00000473829 HECW1Q76N89 1606 aa30.79■■■□□ 2.52
PTCD3-210ENST00000473829 CLIP1P30622 1438 aa30.79■■■□□ 2.52
PTCD3-210ENST00000473829 CDK13Q14004 1512 aaKnown RBP30.78■■■□□ 2.52
PTCD3-210ENST00000473829 CFAP43Q8NDM7 1665 aa30.78■■■□□ 2.52
PTCD3-210ENST00000473829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.75■■■□□ 2.51
PTCD3-210ENST00000473829 HNRNPUL2Q1KMD3 747 aaKnown RBP30.75■■■□□ 2.51
PTCD3-210ENST00000473829 LRRIQ1Q96JM4 1722 aa30.74■■■□□ 2.51
PTCD3-210ENST00000473829 KDM6BO15054 1643 aa30.73■■■□□ 2.51
PTCD3-210ENST00000473829 PCF11O94913 1555 aaKnown RBP30.73■■■□□ 2.51
PTCD3-210ENST00000473829 ABCA9Q8IUA7 1624 aa30.7■■■□□ 2.51
PTCD3-210ENST00000473829 CD109Q6YHK3 1445 aa30.69■■■□□ 2.5
PTCD3-210ENST00000473829 LOC105371045A0A1W2PR82 267 aa30.67■■■□□ 2.5
PTCD3-210ENST00000473829 TEX14Q8IWB6 1497 aa30.67■■■□□ 2.5
PTCD3-210ENST00000473829 CEP162Q5TB80 1403 aa30.66■■■□□ 2.5
PTCD3-210ENST00000473829 ATP1B4Q9UN42 357 aaPredicted RBP30.66■■■□□ 2.5
PTCD3-210ENST00000473829 MAGI3Q5TCQ9 1506 aa30.66■■■□□ 2.5
PTCD3-210ENST00000473829 CASKIN1Q8WXD9 1431 aa30.64■■■□□ 2.49
PTCD3-210ENST00000473829 PLEKHD1A6NEE1 506 aa30.61■■■□□ 2.49
PTCD3-210ENST00000473829 FYCO1Q9BQS8 1478 aa30.58■■■□□ 2.49
PTCD3-210ENST00000473829 COL17A1Q9UMD9 1497 aaPredicted RBP30.58■■■□□ 2.49
PTCD3-210ENST00000473829 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.56■■■□□ 2.488e-6■□□□□ 8.1
PTCD3-210ENST00000473829 TTC37Q6PGP7 1564 aa30.55■■■□□ 2.48
PTCD3-210ENST00000473829 CCDC18Q5T9S5 1454 aa30.52■■■□□ 2.48
PTCD3-210ENST00000473829 KIF14Q15058 1648 aa30.49■■■□□ 2.47
PTCD3-210ENST00000473829 TROQ12816 1431 aaPredicted RBP30.47■■■□□ 2.47
PTCD3-210ENST00000473829 CDK11AQ9UQ88 783 aaPredicted RBP30.43■■■□□ 2.46
PTCD3-210ENST00000473829 NEO1Q92859 1461 aa30.39■■■□□ 2.46
PTCD3-210ENST00000473829 ARAP3Q8WWN8 1544 aa30.39■■■□□ 2.46
PTCD3-210ENST00000473829 MYO5CQ9NQX4 1742 aa30.36■■■□□ 2.45
PTCD3-210ENST00000473829 CFAP74Q9C0B2 1584 aa30.34■■■□□ 2.45
PTCD3-210ENST00000473829 FANCAO15360 1455 aa30.34■■■□□ 2.45
PTCD3-210ENST00000473829 PHLDB1Q86UU1 1377 aa30.32■■■□□ 2.44
PTCD3-210ENST00000473829 PLCH2O75038 1416 aa30.31■■■□□ 2.44
PTCD3-210ENST00000473829 FRMPD1Q5SYB0 1578 aa30.3■■■□□ 2.44
PTCD3-210ENST00000473829 AKNAQ7Z591 1439 aa30.28■■■□□ 2.44
PTCD3-210ENST00000473829 VPS8Q8N3P4 1428 aa30.28■■■□□ 2.44
PTCD3-210ENST00000473829 CDC42BPBQ9Y5S2 1711 aa30.24■■■□□ 2.43
PTCD3-210ENST00000473829 PREX2Q70Z35 1606 aa30.23■■■□□ 2.43
PTCD3-210ENST00000473829 RICTORQ6R327 1708 aa30.23■■■□□ 2.43
PTCD3-210ENST00000473829 RAPGEF3O95398 923 aa30.22■■■□□ 2.43
PTCD3-210ENST00000473829 CDC42BPAQ5VT25 1732 aa30.21■■■□□ 2.43
PTCD3-210ENST00000473829 ARHGAP5Q13017 1502 aa30.2■■■□□ 2.42
PTCD3-210ENST00000473829 DENND4BO75064 1496 aaPredicted RBP30.19■■■□□ 2.42
PTCD3-210ENST00000473829 ADGRL1O94910 1474 aa30.18■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms