RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 JPH4Q96JJ6 628 aa28.98■■■□□ 2.23
USP40-212ENST00000473191 CUL7Q14999 1698 aa28.93■■■□□ 2.22
USP40-212ENST00000473191 CARMIL1Q5VZK9 1371 aa28.86■■■□□ 2.21
USP40-212ENST00000473191 KIAA0586Q9BVV6 1533 aa28.84■■■□□ 2.21
USP40-212ENST00000473191 ADCY10Q96PN6 1610 aa28.66■■■□□ 2.18
USP40-212ENST00000473191 IQGAP2Q13576 1575 aa28.61■■■□□ 2.17
USP40-212ENST00000473191 RAPGEF2Q9Y4G8 1499 aa28.6■■■□□ 2.17
USP40-212ENST00000473191 KIF13AQ9H1H9 1805 aa28.6■■■□□ 2.17
USP40-212ENST00000473191 TTBK1Q5TCY1 1321 aaPredicted RBP28.6■■■□□ 2.17
USP40-212ENST00000473191 PTPRGP23470 1445 aa28.53■■■□□ 2.16
USP40-212ENST00000473191 DISP1Q96F81 1524 aa28.52■■■□□ 2.16
USP40-212ENST00000473191 MAPKBP1O60336 1514 aa28.49■■■□□ 2.15
USP40-212ENST00000473191 NPM1P06748 294 aaKnown RBP eCLIP28.49■■■□□ 2.15
USP40-212ENST00000473191 CARMIL2Q6F5E8 1435 aa28.49■■■□□ 2.15
USP40-212ENST00000473191 TNIKQ9UKE5 1360 aa28.49■■■□□ 2.15
USP40-212ENST00000473191 ABCC10Q5T3U5 1492 aa28.46■■■□□ 2.15
USP40-212ENST00000473191 FAM69CQ0P6D2 419 aa28.45■■■□□ 2.14
USP40-212ENST00000473191 UGGT2Q9NYU1 1516 aa28.44■■■□□ 2.14
USP40-212ENST00000473191 DIP2BQ9P265 1576 aa28.43■■■□□ 2.14
USP40-212ENST00000473191 PRXQ9BXM0 1461 aa28.4■■■□□ 2.14
USP40-212ENST00000473191 KIAA0556O60303 1618 aa28.38■■■□□ 2.13
USP40-212ENST00000473191 CTTNBP2Q8WZ74 1663 aa28.38■■■□□ 2.13
USP40-212ENST00000473191 ABCC2Q92887 1545 aa28.35■■■□□ 2.13
USP40-212ENST00000473191 UACAQ9BZF9 1416 aa28.33■■■□□ 2.13
USP40-212ENST00000473191 UHRF1BP1LA0JNW5 1464 aa28.31■■■□□ 2.12
USP40-212ENST00000473191 TSPOAP1O95153 1857 aa28.26■■■□□ 2.11
USP40-212ENST00000473191 ASXL2Q76L83 1435 aa28.26■■■□□ 2.11
USP40-212ENST00000473191 CSRNP3Q8WYN3 585 aa28.22■■■□□ 2.11
USP40-212ENST00000473191 KDM5BQ9UGL1 1544 aa28.21■■■□□ 2.11
USP40-212ENST00000473191 PLB1Q6P1J6 1458 aa28.21■■■□□ 2.11
USP40-212ENST00000473191 ZCCHC11Q5TAX3 1644 aaKnown RBP28.19■■■□□ 2.1
USP40-212ENST00000473191 GOLGA3Q08378 1498 aa28.15■■■□□ 2.1
USP40-212ENST00000473191 FAM9AQ8IZU1 332 aaPredicted RBP28.14■■■□□ 2.1
USP40-212ENST00000473191 P3H3Q8IVL6 736 aa28.12■■■□□ 2.09
USP40-212ENST00000473191 PPRC1Q5VV67 1664 aaKnown RBP28.12■■■□□ 2.09
USP40-212ENST00000473191 ABCA8O94911 1581 aa28.11■■■□□ 2.09
USP40-212ENST00000473191 GLI2P10070 1586 aa28.11■■■□□ 2.09
USP40-212ENST00000473191 KDM6BO15054 1643 aa28.1■■■□□ 2.09
USP40-212ENST00000473191 EPRSP07814 1512 aaKnown RBP28.09■■■□□ 2.09
USP40-212ENST00000473191 EEA1Q15075 1411 aa28.04■■■□□ 2.08
USP40-212ENST00000473191 AEBP2Q6ZN18 517 aaPredicted RBP28.02■■■□□ 2.08
USP40-212ENST00000473191 MAP3K4Q9Y6R4 1608 aa28.02■■■□□ 2.08
USP40-212ENST00000473191 SAMD9Q5K651 1589 aa28■■■□□ 2.07
USP40-212ENST00000473191 WDR7Q9Y4E6 1490 aa28■■■□□ 2.07
USP40-212ENST00000473191 ARID3CA6NKF2 412 aa27.99■■■□□ 2.07
USP40-212ENST00000473191 RANGAP1P46060 587 aaPredicted RBP27.99■■■□□ 2.07
USP40-212ENST00000473191 CHIC1Q5VXU3 224 aa27.98■■■□□ 2.07
USP40-212ENST00000473191 COL17A1Q9UMD9 1497 aaPredicted RBP27.94■■■□□ 2.06
USP40-212ENST00000473191 EHMT2Q96KQ7 1210 aa27.91■■■□□ 2.06
USP40-212ENST00000473191 KCNH8Q96L42 1107 aa27.91■■■□□ 2.06
USP40-212ENST00000473191 KIF21BO75037 1637 aa27.9■■■□□ 2.06
USP40-212ENST00000473191 ATP10BO94823 1461 aa27.89■■■□□ 2.06
USP40-212ENST00000473191 FHOD3Q2V2M9 1422 aa27.87■■■□□ 2.05
USP40-212ENST00000473191 RAPGEF6Q8TEU7 1601 aa27.84■■■□□ 2.05
USP40-212ENST00000473191 TEX14Q8IWB6 1497 aa27.81■■■□□ 2.04
USP40-212ENST00000473191 KDM4FA0A1W2PPD8 638 aa27.8■■■□□ 2.04
USP40-212ENST00000473191 CD109Q6YHK3 1445 aa27.8■■■□□ 2.04
USP40-212ENST00000473191 CFAP43Q8NDM7 1665 aa27.79■■■□□ 2.04
USP40-212ENST00000473191 NUP153P49790 1475 aaKnown RBP27.77■■■□□ 2.04
USP40-212ENST00000473191 MAGI3Q5TCQ9 1506 aa27.75■■■□□ 2.03
USP40-212ENST00000473191 UBTFP17480 764 aaKnown RBP27.7■■■□□ 2.02
USP40-212ENST00000473191 EFCAB5A4FU69 1503 aa27.69■■■□□ 2.02
USP40-212ENST00000473191 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.69■■■□□ 2.02
USP40-212ENST00000473191 HNRNPUL2Q1KMD3 747 aaKnown RBP27.69■■■□□ 2.02
USP40-212ENST00000473191 ABCA9Q8IUA7 1624 aa27.66■■■□□ 2.02
USP40-212ENST00000473191 ARHGAP35Q9NRY4 1499 aa27.6■■■□□ 2.01
USP40-212ENST00000473191 ADGRL1O94910 1474 aa27.57■■■□□ 2
USP40-212ENST00000473191 CDK13Q14004 1512 aaKnown RBP27.57■■■□□ 2
USP40-212ENST00000473191 ARAP3Q8WWN8 1544 aa27.53■■■□□ 2
USP40-212ENST00000473191 PLEKHD1A6NEE1 506 aa27.51■■□□□ 1.99
USP40-212ENST00000473191 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.47■■□□□ 1.99
USP40-212ENST00000473191 RAPGEF3O95398 923 aa27.47■■□□□ 1.99
USP40-212ENST00000473191 ATP1B4Q9UN42 357 aaPredicted RBP27.46■■□□□ 1.99
USP40-212ENST00000473191 TTC37Q6PGP7 1564 aa27.45■■□□□ 1.99
USP40-212ENST00000473191 FMN1Q68DA7 1419 aa27.44■■□□□ 1.98
USP40-212ENST00000473191 NEO1Q92859 1461 aa27.44■■□□□ 1.98
USP40-212ENST00000473191 FRMPD1Q5SYB0 1578 aa27.43■■□□□ 1.98
USP40-212ENST00000473191 HECW1Q76N89 1606 aa27.41■■□□□ 1.98
USP40-212ENST00000473191 LRRIQ1Q96JM4 1722 aa27.4■■□□□ 1.98
USP40-212ENST00000473191 PHLDB1Q86UU1 1377 aa27.38■■□□□ 1.97
USP40-212ENST00000473191 FANCAO15360 1455 aa27.34■■□□□ 1.97
USP40-212ENST00000473191 AKNAQ7Z591 1439 aa27.33■■□□□ 1.97
USP40-212ENST00000473191 KIF14Q15058 1648 aa27.31■■□□□ 1.96
USP40-212ENST00000473191 RICTORQ6R327 1708 aa27.3■■□□□ 1.96
USP40-212ENST00000473191 PCF11O94913 1555 aaKnown RBP27.29■■□□□ 1.96
USP40-212ENST00000473191 DENND4BO75064 1496 aaPredicted RBP27.26■■□□□ 1.95
USP40-212ENST00000473191 PLCH2O75038 1416 aa27.25■■□□□ 1.95
USP40-212ENST00000473191 CFAP74Q9C0B2 1584 aa27.25■■□□□ 1.95
USP40-212ENST00000473191 TROQ12816 1431 aaPredicted RBP27.23■■□□□ 1.95
USP40-212ENST00000473191 CASKIN1Q8WXD9 1431 aa27.22■■□□□ 1.95
USP40-212ENST00000473191 MYO5CQ9NQX4 1742 aa27.19■■□□□ 1.94
USP40-212ENST00000473191 CLIP1P30622 1438 aa27.19■■□□□ 1.94
USP40-212ENST00000473191 CDK11AQ9UQ88 783 aaPredicted RBP27.19■■□□□ 1.94
USP40-212ENST00000473191 ARHGEF40Q8TER5 1519 aa27.18■■□□□ 1.94
USP40-212ENST00000473191 ADAMTSL3P82987 1691 aa27.17■■□□□ 1.94
USP40-212ENST00000473191 SCAPERQ9BY12 1400 aa27.16■■□□□ 1.94
USP40-212ENST00000473191 YEATS2Q9ULM3 1422 aa27.16■■□□□ 1.94
USP40-212ENST00000473191 SIGLEC1Q9BZZ2 1709 aa27.16■■□□□ 1.94
USP40-212ENST00000473191 ZMYM4Q5VZL5 1548 aa27.15■■□□□ 1.94
USP40-212ENST00000473191 HECW2Q9P2P5 1572 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms