RNA–Protein interactions for RNA: ENST00000471658.5

PSPC1-203, Transcript of paraspeckle component 1, humanhuman

TSL 1 (best)

Gene PSPC1, Length 1,647 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-203ENST00000471658 NUP160Q12769 1436 aa31.09■■■□□ 2.57
PSPC1-203ENST00000471658 RANGAP1P46060 587 aaPredicted RBP31.04■■■□□ 2.56
PSPC1-203ENST00000471658 CTTNBP2Q8WZ74 1663 aa31■■■□□ 2.55
PSPC1-203ENST00000471658 KIAA0586Q9BVV6 1533 aa31■■■□□ 2.55
PSPC1-203ENST00000471658 OSCARQ8IYS5 282 aa30.98■■■□□ 2.55
PSPC1-203ENST00000471658 IQGAP2Q13576 1575 aa30.93■■■□□ 2.54
PSPC1-203ENST00000471658 CLASP1Q7Z460 1538 aa30.89■■■□□ 2.54
PSPC1-203ENST00000471658 CEP162Q5TB80 1403 aa30.88■■■□□ 2.53
PSPC1-203ENST00000471658 JPH4Q96JJ6 628 aa30.87■■■□□ 2.53
PSPC1-203ENST00000471658 CLIP1P30622 1438 aa30.81■■■□□ 2.52
PSPC1-203ENST00000471658 P3H3Q8IVL6 736 aa30.79■■■□□ 2.52
PSPC1-203ENST00000471658 UGGT2Q9NYU1 1516 aa30.78■■■□□ 2.52
PSPC1-203ENST00000471658 ARHGAP35Q9NRY4 1499 aa30.74■■■□□ 2.51
PSPC1-203ENST00000471658 SHROOM2Q13796 1616 aa30.73■■■□□ 2.51
PSPC1-203ENST00000471658 PRG4Q92954 1404 aaPredicted RBP30.71■■■□□ 2.51
PSPC1-203ENST00000471658 DISP1Q96F81 1524 aa30.71■■■□□ 2.51
PSPC1-203ENST00000471658 SAMD9Q5K651 1589 aa30.68■■■□□ 2.5
PSPC1-203ENST00000471658 ERCC6L2Q5T890 1561 aa30.66■■■□□ 2.5
PSPC1-203ENST00000471658 EFCAB5A4FU69 1503 aa30.65■■■□□ 2.5
PSPC1-203ENST00000471658 FHOD3Q2V2M9 1422 aa30.65■■■□□ 2.5
PSPC1-203ENST00000471658 ARAP1Q96P48 1450 aa30.64■■■□□ 2.49
PSPC1-203ENST00000471658 KIAA0556O60303 1618 aa30.63■■■□□ 2.49
PSPC1-203ENST00000471658 CARMIL2Q6F5E8 1435 aa30.62■■■□□ 2.49
PSPC1-203ENST00000471658 TTBK1Q5TCY1 1321 aaPredicted RBP30.6■■■□□ 2.49
PSPC1-203ENST00000471658 PTPRGP23470 1445 aa30.45■■■□□ 2.46
PSPC1-203ENST00000471658 ARHGEF11O15085 1522 aa30.44■■■□□ 2.46
PSPC1-203ENST00000471658 VPS8Q8N3P4 1428 aa30.41■■■□□ 2.46
PSPC1-203ENST00000471658 FMN1Q68DA7 1419 aa30.39■■■□□ 2.46
PSPC1-203ENST00000471658 RIMBP3CA6NJZ7 1639 aa30.37■■■□□ 2.45
PSPC1-203ENST00000471658 RIMBP3BA6NNM3 1639 aa30.37■■■□□ 2.45
PSPC1-203ENST00000471658 RIMBP3Q9UFD9 1639 aa30.37■■■□□ 2.45
PSPC1-203ENST00000471658 PLB1Q6P1J6 1458 aa30.34■■■□□ 2.45
PSPC1-203ENST00000471658 ATP1B4Q9UN42 357 aaPredicted RBP30.33■■■□□ 2.45
PSPC1-203ENST00000471658 PCF11O94913 1555 aaKnown RBP30.3■■■□□ 2.44
PSPC1-203ENST00000471658 CASKIN1Q8WXD9 1431 aa30.28■■■□□ 2.44
PSPC1-203ENST00000471658 ABCA8O94911 1581 aa30.25■■■□□ 2.43
PSPC1-203ENST00000471658 ARID3CA6NKF2 412 aa30.25■■■□□ 2.43
PSPC1-203ENST00000471658 DNAJC5Q9H3Z4 198 aa30.25■■■□□ 2.43
PSPC1-203ENST00000471658 UACAQ9BZF9 1416 aa30.24■■■□□ 2.43
PSPC1-203ENST00000471658 RAPGEF6Q8TEU7 1601 aa30.24■■■□□ 2.43
PSPC1-203ENST00000471658 CYB5RLQ6IPT4 315 aa30.24■■■□□ 2.43
PSPC1-203ENST00000471658 FYCO1Q9BQS8 1478 aa30.22■■■□□ 2.43
PSPC1-203ENST00000471658 NUP153P49790 1475 aaKnown RBP30.18■■■□□ 2.42
PSPC1-203ENST00000471658 HECW1Q76N89 1606 aa30.14■■■□□ 2.42
PSPC1-203ENST00000471658 ABCC2Q92887 1545 aa30.14■■■□□ 2.41
PSPC1-203ENST00000471658 LRRIQ1Q96JM4 1722 aa30.12■■■□□ 2.41
PSPC1-203ENST00000471658 UHRF1BP1LA0JNW5 1464 aa30.11■■■□□ 2.41
PSPC1-203ENST00000471658 ADCY10Q96PN6 1610 aa30.11■■■□□ 2.41
PSPC1-203ENST00000471658 EPRSP07814 1512 aaKnown RBP30.1■■■□□ 2.41
PSPC1-203ENST00000471658 CDK13Q14004 1512 aaKnown RBP30.1■■■□□ 2.41
PSPC1-203ENST00000471658 APLP2Q06481 763 aa30.09■■■□□ 2.41
PSPC1-203ENST00000471658 PPARGC1BQ86YN6 1023 aaKnown RBP30.08■■■□□ 2.41
PSPC1-203ENST00000471658 ATP10BO94823 1461 aa30.07■■■□□ 2.4
PSPC1-203ENST00000471658 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.07■■■□□ 2.4
PSPC1-203ENST00000471658 HNRNPUL2Q1KMD3 747 aaKnown RBP30.07■■■□□ 2.4
PSPC1-203ENST00000471658 KANK4Q5T7N3 995 aaPredicted RBP30.02■■■□□ 2.4
PSPC1-203ENST00000471658 TIAM1Q13009 1591 aa30.01■■■□□ 2.39
PSPC1-203ENST00000471658 CCDC18Q5T9S5 1454 aa30.01■■■□□ 2.39
PSPC1-203ENST00000471658 KDM5BQ9UGL1 1544 aa29.99■■■□□ 2.39
PSPC1-203ENST00000471658 MAP3K1Q13233 1512 aa29.97■■■□□ 2.39
PSPC1-203ENST00000471658 CFAP43Q8NDM7 1665 aa29.96■■■□□ 2.39
PSPC1-203ENST00000471658 ZCCHC11Q5TAX3 1644 aaKnown RBP29.95■■■□□ 2.39
PSPC1-203ENST00000471658 NPM1P06748 294 aaKnown RBP eCLIP29.93■■■□□ 2.38
PSPC1-203ENST00000471658 MAGI3Q5TCQ9 1506 aa29.92■■■□□ 2.38
PSPC1-203ENST00000471658 LRRC9Q6ZRR7 1453 aa29.9■■■□□ 2.38
PSPC1-203ENST00000471658 PLEKHD1A6NEE1 506 aa29.88■■■□□ 2.37
PSPC1-203ENST00000471658 CDK11AQ9UQ88 783 aaPredicted RBP29.88■■■□□ 2.37
PSPC1-203ENST00000471658 MTUS2Q5JR59 1369 aa29.87■■■□□ 2.37
PSPC1-203ENST00000471658 TROQ12816 1431 aaPredicted RBP29.81■■■□□ 2.36
PSPC1-203ENST00000471658 ASXL2Q76L83 1435 aa29.79■■■□□ 2.36
PSPC1-203ENST00000471658 KCNH8Q96L42 1107 aa29.78■■■□□ 2.36
PSPC1-203ENST00000471658 EHBP1L1Q8N3D4 1523 aa29.78■■■□□ 2.36
PSPC1-203ENST00000471658 WDR7Q9Y4E6 1490 aa29.73■■■□□ 2.35
PSPC1-203ENST00000471658 KIF14Q15058 1648 aa29.7■■■□□ 2.34
PSPC1-203ENST00000471658 MAPKBP1O60336 1514 aa29.69■■■□□ 2.34
PSPC1-203ENST00000471658 NCOA2Q15596 1464 aa29.68■■■□□ 2.34
PSPC1-203ENST00000471658 SUPT6HQ7KZ85 1726 aaKnown RBP29.66■■■□□ 2.34
PSPC1-203ENST00000471658 PHLDB1Q86UU1 1377 aa29.63■■■□□ 2.33
PSPC1-203ENST00000471658 ABCC10Q5T3U5 1492 aa29.6■■■□□ 2.33
PSPC1-203ENST00000471658 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.59■■■□□ 2.33
PSPC1-203ENST00000471658 TTC37Q6PGP7 1564 aa29.55■■■□□ 2.32
PSPC1-203ENST00000471658 CCNB3Q8WWL7 1395 aa29.55■■■□□ 2.32
PSPC1-203ENST00000471658 FAM69CQ0P6D2 419 aa29.51■■■□□ 2.31
PSPC1-203ENST00000471658 GPATCH8Q9UKJ3 1502 aaKnown RBP29.51■■■□□ 2.31
PSPC1-203ENST00000471658 MYOM3Q5VTT5 1437 aa29.49■■■□□ 2.31
PSPC1-203ENST00000471658 ABCA9Q8IUA7 1624 aa29.48■■■□□ 2.31
PSPC1-203ENST00000471658 DIP2BQ9P265 1576 aa29.47■■■□□ 2.31
PSPC1-203ENST00000471658 CDC42BPAQ5VT25 1732 aa29.44■■■□□ 2.3
PSPC1-203ENST00000471658 CFDP1Q9UEE9 299 aaPredicted RBP29.43■■■□□ 2.3
PSPC1-203ENST00000471658 GLI2P10070 1586 aa29.43■■■□□ 2.3
PSPC1-203ENST00000471658 FGD6Q6ZV73 1430 aa29.42■■■□□ 2.3
PSPC1-203ENST00000471658 CD109Q6YHK3 1445 aa29.41■■■□□ 2.3
PSPC1-203ENST00000471658 PLCH2O75038 1416 aa29.41■■■□□ 2.3
PSPC1-203ENST00000471658 ZNF777Q9ULD5 760 aaPredicted RBP29.4■■■□□ 2.3
PSPC1-203ENST00000471658 ZNF644Q9H582 1327 aaPredicted RBP29.39■■■□□ 2.3
PSPC1-203ENST00000471658 MYO5CQ9NQX4 1742 aa29.39■■■□□ 2.29
PSPC1-203ENST00000471658 RRBP1Q9P2E9 1410 aaKnown RBP29.38■■■□□ 2.29
PSPC1-203ENST00000471658 CDC42BPBQ9Y5S2 1711 aa29.38■■■□□ 2.29
PSPC1-203ENST00000471658 PREX2Q70Z35 1606 aa29.38■■■□□ 2.29
PSPC1-203ENST00000471658 ITSN2Q9NZM3 1697 aa29.37■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms