RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 SMARCA2P51531 1590 aa12.67□□□□□ -0.38
SMC4-212ENST00000470240 BICRAQ9NZM4 1560 aa12.67□□□□□ -0.38
SMC4-212ENST00000470240 TRIM26Q12899 539 aaPredicted RBP12.66□□□□□ -0.38
SMC4-212ENST00000470240 PEG3Q9GZU2 1588 aa12.64□□□□□ -0.39
SMC4-212ENST00000470240 CCDC88BA6NC98 1476 aa12.64□□□□□ -0.39
SMC4-212ENST00000470240 FAM9AQ8IZU1 332 aaPredicted RBP12.63□□□□□ -0.39
SMC4-212ENST00000470240 HAX1O00165 279 aa12.61□□□□□ -0.39
SMC4-212ENST00000470240 CREBZFQ9NS37 354 aa12.6□□□□□ -0.39
SMC4-212ENST00000470240 FBXO3Q9UK99 471 aa12.58□□□□□ -0.4
SMC4-212ENST00000470240 PLEKHG5O94827 1062 aa12.57□□□□□ -0.4
SMC4-212ENST00000470240 FARP1Q9Y4F1 1045 aaPredicted RBP12.57□□□□□ -0.4
SMC4-212ENST00000470240 EEA1Q15075 1411 aa12.56□□□□□ -0.4
SMC4-212ENST00000470240 MIER1Q8N108 512 aa12.54□□□□□ -0.4
SMC4-212ENST00000470240 PLCD3Q8N3E9 789 aa12.52□□□□□ -0.41
SMC4-212ENST00000470240 BAZ1BQ9UIG0 1483 aaKnown RBP12.52□□□□□ -0.41
SMC4-212ENST00000470240 ABCC8Q09428 1581 aa12.52□□□□□ -0.41
SMC4-212ENST00000470240 ATAD2BQ9ULI0 1458 aa12.49□□□□□ -0.41
SMC4-212ENST00000470240 ZEB1P37275 1124 aaPredicted RBP12.49□□□□□ -0.41
SMC4-212ENST00000470240 NPM1P06748 294 aaKnown RBP eCLIP12.47□□□□□ -0.41
SMC4-212ENST00000470240 WRNQ14191 1432 aaPredicted RBP eCLIP12.45□□□□□ -0.42
SMC4-212ENST00000470240 C19orf67A6NJJ6 358 aa12.44□□□□□ -0.42
SMC4-212ENST00000470240 CD44P16070 742 aaKnown RBP12.42□□□□□ -0.42
SMC4-212ENST00000470240 MNX1P50219 401 aaPredicted RBP12.4□□□□□ -0.42
SMC4-212ENST00000470240 SP7Q8TDD2 431 aaPredicted RBP12.4□□□□□ -0.42
SMC4-212ENST00000470240 ZBTB47Q9UFB7 747 aaPredicted RBP12.4□□□□□ -0.42
SMC4-212ENST00000470240 HMGXB3Q12766 1538 aa12.38□□□□□ -0.43
SMC4-212ENST00000470240 EVX2Q03828 476 aa12.38□□□□□ -0.43
SMC4-212ENST00000470240 TNIKQ9UKE5 1360 aa12.38□□□□□ -0.43
SMC4-212ENST00000470240 GOLGA3Q08378 1498 aa12.38□□□□□ -0.43
SMC4-212ENST00000470240 PAK3O75914 559 aaPredicted RBP12.37□□□□□ -0.43
SMC4-212ENST00000470240 VASPP50552 380 aaPredicted RBP12.37□□□□□ -0.43
SMC4-212ENST00000470240 CEP162Q5TB80 1403 aa12.35□□□□□ -0.43
SMC4-212ENST00000470240 SOGA1O94964 1423 aa12.34□□□□□ -0.43
SMC4-212ENST00000470240 CEP164Q9UPV0 1460 aa12.33□□□□□ -0.44
SMC4-212ENST00000470240 KIF21BO75037 1637 aa12.33□□□□□ -0.44
SMC4-212ENST00000470240 SYNJ1O43426 1573 aa12.32□□□□□ -0.44
SMC4-212ENST00000470240 ZRANB1Q9UGI0 708 aa12.32□□□□□ -0.44
SMC4-212ENST00000470240 UBTFP17480 764 aaKnown RBP12.31□□□□□ -0.44
SMC4-212ENST00000470240 NCAPD3P42695 1498 aa12.31□□□□□ -0.44
SMC4-212ENST00000470240 KLHL34Q8N239 644 aa12.29□□□□□ -0.44
SMC4-212ENST00000470240 TOP2BQ02880 1626 aa12.28□□□□□ -0.44
SMC4-212ENST00000470240 BIVM-ERCC5R4GMW8 1640 aa12.26□□□□□ -0.45
SMC4-212ENST00000470240 PPARGC1BQ86YN6 1023 aaKnown RBP12.24□□□□□ -0.45
SMC4-212ENST00000470240 TSPYL2Q9H2G4 693 aaPredicted RBP12.24□□□□□ -0.45
SMC4-212ENST00000470240 RUSC2Q8N2Y8 1516 aa12.23□□□□□ -0.45
SMC4-212ENST00000470240 PRDM2Q13029 1718 aa12.23□□□□□ -0.45
SMC4-212ENST00000470240 ZNF579Q8NAF0 562 aaKnown RBP12.21□□□□□ -0.45
SMC4-212ENST00000470240 RASEFQ8IZ41 740 aa12.19□□□□□ -0.46
SMC4-212ENST00000470240 GABBR2O75899 941 aa12.18□□□□□ -0.46
SMC4-212ENST00000470240 ERICH3Q5RHP9 1530 aa12.17□□□□□ -0.46
SMC4-212ENST00000470240 CLCN6P51797 869 aa12.17□□□□□ -0.46
SMC4-212ENST00000470240 CLIP1P30622 1438 aa12.17□□□□□ -0.46
SMC4-212ENST00000470240 NUBP1P53384 320 aa12.16□□□□□ -0.46
SMC4-212ENST00000470240 FAM212AQ96EL1 285 aa12.16□□□□□ -0.46
SMC4-212ENST00000470240 CFTRP13569 1480 aa12.15□□□□□ -0.46
SMC4-212ENST00000470240 IFNLR1Q8IU57 520 aaPredicted RBP12.15□□□□□ -0.46
SMC4-212ENST00000470240 PHF12Q96QT6 1004 aa12.15□□□□□ -0.46
SMC4-212ENST00000470240 CCER1Q8TC90 406 aaPredicted RBP12.13□□□□□ -0.47
SMC4-212ENST00000470240 KIF27Q86VH2 1401 aa12.12□□□□□ -0.47
SMC4-212ENST00000470240 VPS8Q8N3P4 1428 aa12.12□□□□□ -0.47
SMC4-212ENST00000470240 RAPGEF2Q9Y4G8 1499 aa12.1□□□□□ -0.47
SMC4-212ENST00000470240 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
SMC4-212ENST00000470240 SPOCK2Q92563 424 aa12.1□□□□□ -0.47
SMC4-212ENST00000470240 CCDC61Q9Y6R9 512 aa12.1□□□□□ -0.47
SMC4-212ENST00000470240 CUX1P39880 1505 aa12.1□□□□□ -0.47
SMC4-212ENST00000470240 PRXQ9BXM0 1461 aa12.06□□□□□ -0.48
SMC4-212ENST00000470240 TTBK1Q5TCY1 1321 aaPredicted RBP12.05□□□□□ -0.48
SMC4-212ENST00000470240 GSE1Q14687 1217 aa12.04□□□□□ -0.48
SMC4-212ENST00000470240 CC2D2AQ9P2K1 1620 aa12.04□□□□□ -0.48
SMC4-212ENST00000470240 CADPSQ9ULU8 1353 aa12.04□□□□□ -0.48
SMC4-212ENST00000470240 GALR2O43603 387 aaPredicted RBP12.03□□□□□ -0.48
SMC4-212ENST00000470240 DCBLD2Q96PD2 775 aa12.02□□□□□ -0.49
SMC4-212ENST00000470240 KIF12Q96FN5 646 aa12□□□□□ -0.49
SMC4-212ENST00000470240 MS4A3Q96HJ5 214 aa12□□□□□ -0.49
SMC4-212ENST00000470240 CIZ1Q9ULV3 898 aaPredicted RBP11.99□□□□□ -0.49
SMC4-212ENST00000470240 MAP3K13O43283 966 aa11.97□□□□□ -0.49
SMC4-212ENST00000470240 CUX2O14529 1486 aa11.96□□□□□ -0.49
SMC4-212ENST00000470240 PYGBP11216 843 aa11.96□□□□□ -0.49
SMC4-212ENST00000470240 PCDHB13Q9Y5F0 798 aa11.96□□□□□ -0.49
SMC4-212ENST00000470240 RANGAP1P46060 587 aaPredicted RBP11.94□□□□□ -0.5
SMC4-212ENST00000470240 FGD5Q6ZNL6 1462 aa11.94□□□□□ -0.5
SMC4-212ENST00000470240 ARAP1Q96P48 1450 aa11.94□□□□□ -0.5
SMC4-212ENST00000470240 FANCD2Q9BXW9 1451 aa11.94□□□□□ -0.5
SMC4-212ENST00000470240 DNMBPQ6XZF7 1577 aa11.93□□□□□ -0.5
SMC4-212ENST00000470240 SGIP1Q9BQI5 828 aa11.91□□□□□ -0.5
SMC4-212ENST00000470240 LAMC3Q9Y6N6 1575 aa11.89□□□□□ -0.51
SMC4-212ENST00000470240 CARMIL1Q5VZK9 1371 aa11.88□□□□□ -0.51
SMC4-212ENST00000470240 CUL7Q14999 1698 aa11.87□□□□□ -0.51
SMC4-212ENST00000470240 POTEIP0CG38 1075 aa11.86□□□□□ -0.51
SMC4-212ENST00000470240 IGF1RP08069 1367 aa11.86□□□□□ -0.51
SMC4-212ENST00000470240 ARHGAP35Q9NRY4 1499 aa11.85□□□□□ -0.51
SMC4-212ENST00000470240 IFNL1Q8IU54 200 aa11.85□□□□□ -0.51
SMC4-212ENST00000470240 MAP3K1Q13233 1512 aa11.85□□□□□ -0.51
SMC4-212ENST00000470240 ABCA10Q8WWZ4 1543 aa11.85□□□□□ -0.51
SMC4-212ENST00000470240 FHAD1B1AJZ9 1412 aa11.85□□□□□ -0.51
SMC4-212ENST00000470240 TOPBP1Q92547 1522 aa11.84□□□□□ -0.51
SMC4-212ENST00000470240 CHRM1P11229 460 aaPredicted RBP11.82□□□□□ -0.52
SMC4-212ENST00000470240 CLSPNQ9HAW4 1339 aa11.82□□□□□ -0.52
SMC4-212ENST00000470240 EFCAB5A4FU69 1503 aa11.81□□□□□ -0.52
SMC4-212ENST00000470240 TIE1P35590 1138 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms