RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CUL7Q14999 1698 aa28.84■■■□□ 2.21
CCDC28B-204ENST00000469003 JPH4Q96JJ6 628 aa28.84■■■□□ 2.21
CCDC28B-204ENST00000469003 PRG4Q92954 1404 aaPredicted RBP28.84■■■□□ 2.21
CCDC28B-204ENST00000469003 KIAA0586Q9BVV6 1533 aa28.73■■■□□ 2.19
CCDC28B-204ENST00000469003 CARMIL1Q5VZK9 1371 aa28.67■■■□□ 2.18
CCDC28B-204ENST00000469003 ADCY10Q96PN6 1610 aa28.51■■■□□ 2.15
CCDC28B-204ENST00000469003 KIF13AQ9H1H9 1805 aa28.5■■■□□ 2.15
CCDC28B-204ENST00000469003 NPM1P06748 294 aaKnown RBP eCLIP28.48■■■□□ 2.15
CCDC28B-204ENST00000469003 IQGAP2Q13576 1575 aa28.48■■■□□ 2.15
CCDC28B-204ENST00000469003 MAPKBP1O60336 1514 aa28.45■■■□□ 2.15
CCDC28B-204ENST00000469003 RAPGEF2Q9Y4G8 1499 aa28.45■■■□□ 2.14
CCDC28B-204ENST00000469003 CARMIL2Q6F5E8 1435 aa28.43■■■□□ 2.14
CCDC28B-204ENST00000469003 PTPRGP23470 1445 aa28.42■■■□□ 2.14
CCDC28B-204ENST00000469003 TNIKQ9UKE5 1360 aa28.39■■■□□ 2.14
CCDC28B-204ENST00000469003 ABCC10Q5T3U5 1492 aa28.39■■■□□ 2.13
CCDC28B-204ENST00000469003 DIP2BQ9P265 1576 aa28.33■■■□□ 2.13
CCDC28B-204ENST00000469003 FAM69CQ0P6D2 419 aa28.33■■■□□ 2.13
CCDC28B-204ENST00000469003 DISP1Q96F81 1524 aa28.32■■■□□ 2.12
CCDC28B-204ENST00000469003 UGGT2Q9NYU1 1516 aa28.31■■■□□ 2.12
CCDC28B-204ENST00000469003 TTBK1Q5TCY1 1321 aaPredicted RBP28.3■■■□□ 2.12
CCDC28B-204ENST00000469003 ABCC2Q92887 1545 aa28.26■■■□□ 2.11
CCDC28B-204ENST00000469003 UHRF1BP1LA0JNW5 1464 aa28.24■■■□□ 2.11
CCDC28B-204ENST00000469003 CTTNBP2Q8WZ74 1663 aa28.23■■■□□ 2.11
CCDC28B-204ENST00000469003 KIAA0556O60303 1618 aa28.21■■■□□ 2.11
CCDC28B-204ENST00000469003 UACAQ9BZF9 1416 aa28.21■■■□□ 2.11
CCDC28B-204ENST00000469003 PRXQ9BXM0 1461 aa28.2■■■□□ 2.1
CCDC28B-204ENST00000469003 ASXL2Q76L83 1435 aa28.13■■■□□ 2.09
CCDC28B-204ENST00000469003 PLB1Q6P1J6 1458 aa28.13■■■□□ 2.09
CCDC28B-204ENST00000469003 TSPOAP1O95153 1857 aa28.11■■■□□ 2.09
CCDC28B-204ENST00000469003 KDM5BQ9UGL1 1544 aa28.1■■■□□ 2.09
CCDC28B-204ENST00000469003 GOLGA3Q08378 1498 aa28.09■■■□□ 2.09
CCDC28B-204ENST00000469003 GLI2P10070 1586 aa28.07■■■□□ 2.08
CCDC28B-204ENST00000469003 KDM6BO15054 1643 aa28.05■■■□□ 2.08
CCDC28B-204ENST00000469003 ZCCHC11Q5TAX3 1644 aaKnown RBP28.04■■■□□ 2.08
CCDC28B-204ENST00000469003 KDM4FA0A1W2PPD8 638 aa28■■■□□ 2.07
CCDC28B-204ENST00000469003 CSRNP3Q8WYN3 585 aa27.99■■■□□ 2.07
CCDC28B-204ENST00000469003 EPRSP07814 1512 aaKnown RBP27.97■■■□□ 2.07
CCDC28B-204ENST00000469003 PPRC1Q5VV67 1664 aaKnown RBP27.97■■■□□ 2.07
CCDC28B-204ENST00000469003 ABCA8O94911 1581 aa27.95■■■□□ 2.07
CCDC28B-204ENST00000469003 EEA1Q15075 1411 aa27.94■■■□□ 2.06
CCDC28B-204ENST00000469003 MAP3K4Q9Y6R4 1608 aa27.91■■■□□ 2.06
CCDC28B-204ENST00000469003 WDR7Q9Y4E6 1490 aa27.89■■■□□ 2.06
CCDC28B-204ENST00000469003 TEX14Q8IWB6 1497 aa27.83■■■□□ 2.04
CCDC28B-204ENST00000469003 SAMD9Q5K651 1589 aa27.82■■■□□ 2.04
CCDC28B-204ENST00000469003 FAM9AQ8IZU1 332 aaPredicted RBP27.81■■■□□ 2.04
CCDC28B-204ENST00000469003 ILDR1Q86SU0 546 aaPredicted RBP27.8■■■□□ 2.04
CCDC28B-204ENST00000469003 P3H3Q8IVL6 736 aa27.8■■■□□ 2.04
CCDC28B-204ENST00000469003 COL17A1Q9UMD9 1497 aaPredicted RBP27.74■■■□□ 2.03
CCDC28B-204ENST00000469003 CFAP43Q8NDM7 1665 aa27.74■■■□□ 2.03
CCDC28B-204ENST00000469003 KIF21BO75037 1637 aa27.71■■■□□ 2.03
CCDC28B-204ENST00000469003 KCNH8Q96L42 1107 aa27.71■■■□□ 2.03
CCDC28B-204ENST00000469003 ATP10BO94823 1461 aa27.7■■■□□ 2.03
CCDC28B-204ENST00000469003 CD109Q6YHK3 1445 aa27.7■■■□□ 2.03
CCDC28B-204ENST00000469003 MAGI3Q5TCQ9 1506 aa27.69■■■□□ 2.02
CCDC28B-204ENST00000469003 RAPGEF6Q8TEU7 1601 aa27.69■■■□□ 2.02
CCDC28B-204ENST00000469003 ADGRL1O94910 1474 aa27.66■■■□□ 2.02
CCDC28B-204ENST00000469003 ARID3CA6NKF2 412 aa27.65■■■□□ 2.02
CCDC28B-204ENST00000469003 RANGAP1P46060 587 aaPredicted RBP27.62■■■□□ 2.01
CCDC28B-204ENST00000469003 FHOD3Q2V2M9 1422 aa27.61■■■□□ 2.01
CCDC28B-204ENST00000469003 CHIC1Q5VXU3 224 aa27.61■■■□□ 2.01
CCDC28B-204ENST00000469003 EFCAB5A4FU69 1503 aa27.58■■■□□ 2.01
CCDC28B-204ENST00000469003 NUP153P49790 1475 aaKnown RBP27.57■■■□□ 2
CCDC28B-204ENST00000469003 ABCA9Q8IUA7 1624 aa27.56■■■□□ 2
CCDC28B-204ENST00000469003 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.51■■□□□ 1.99
CCDC28B-204ENST00000469003 HNRNPUL2Q1KMD3 747 aaKnown RBP27.51■■□□□ 1.99
CCDC28B-204ENST00000469003 HECW2Q9P2P5 1572 aa27.48■■□□□ 1.99
CCDC28B-204ENST00000469003 ARAP3Q8WWN8 1544 aa27.47■■□□□ 1.99
CCDC28B-204ENST00000469003 UBTFP17480 764 aaKnown RBP27.45■■□□□ 1.98
CCDC28B-204ENST00000469003 PHLDB1Q86UU1 1377 aa27.44■■□□□ 1.98
CCDC28B-204ENST00000469003 EHMT2Q96KQ7 1210 aa27.41■■□□□ 1.98
CCDC28B-204ENST00000469003 PLEKHD1A6NEE1 506 aa27.39■■□□□ 1.98
CCDC28B-204ENST00000469003 NEO1Q92859 1461 aa27.38■■□□□ 1.97
CCDC28B-204ENST00000469003 ARHGAP35Q9NRY4 1499 aa27.34■■□□□ 1.97
CCDC28B-204ENST00000469003 FMN1Q68DA7 1419 aa27.33■■□□□ 1.96
CCDC28B-204ENST00000469003 CDK13Q14004 1512 aaKnown RBP27.31■■□□□ 1.96
CCDC28B-204ENST00000469003 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.3■■□□□ 1.961e-6■■■■■ 42.9
CCDC28B-204ENST00000469003 HECW1Q76N89 1606 aa27.27■■□□□ 1.96
CCDC28B-204ENST00000469003 RAPGEF3O95398 923 aa27.27■■□□□ 1.96
CCDC28B-204ENST00000469003 FRMPD1Q5SYB0 1578 aa27.25■■□□□ 1.95
CCDC28B-204ENST00000469003 TTC37Q6PGP7 1564 aa27.25■■□□□ 1.95
CCDC28B-204ENST00000469003 CFAP74Q9C0B2 1584 aa27.24■■□□□ 1.95
CCDC28B-204ENST00000469003 FANCAO15360 1455 aa27.22■■□□□ 1.95
CCDC28B-204ENST00000469003 AKNAQ7Z591 1439 aa27.21■■□□□ 1.95
CCDC28B-204ENST00000469003 ATP1B4Q9UN42 357 aaPredicted RBP27.2■■□□□ 1.94
CCDC28B-204ENST00000469003 DENND4BO75064 1496 aaPredicted RBP27.19■■□□□ 1.94
CCDC28B-204ENST00000469003 RICTORQ6R327 1708 aa27.17■■□□□ 1.94
CCDC28B-204ENST00000469003 CDK11AQ9UQ88 783 aaPredicted RBP27.14■■□□□ 1.94
CCDC28B-204ENST00000469003 PLCH2O75038 1416 aa27.12■■□□□ 1.93
CCDC28B-204ENST00000469003 ARHGEF40Q8TER5 1519 aa27.11■■□□□ 1.93
CCDC28B-204ENST00000469003 LRRIQ1Q96JM4 1722 aa27.1■■□□□ 1.93
CCDC28B-204ENST00000469003 ADAMTSL3P82987 1691 aa27.09■■□□□ 1.93
CCDC28B-204ENST00000469003 TROQ12816 1431 aaPredicted RBP27.08■■□□□ 1.93
CCDC28B-204ENST00000469003 MYO5CQ9NQX4 1742 aa27.08■■□□□ 1.93
CCDC28B-204ENST00000469003 ZMYM4Q5VZL5 1548 aa27.08■■□□□ 1.93
CCDC28B-204ENST00000469003 KIF14Q15058 1648 aa27.08■■□□□ 1.93
CCDC28B-204ENST00000469003 FBXO41Q8TF61 875 aa27.07■■□□□ 1.92
CCDC28B-204ENST00000469003 BCORL1Q5H9F3 1711 aa27.05■■□□□ 1.92
CCDC28B-204ENST00000469003 CASKIN1Q8WXD9 1431 aa27.05■■□□□ 1.92
CCDC28B-204ENST00000469003 CLIP1P30622 1438 aa27.04■■□□□ 1.92
CCDC28B-204ENST00000469003 PCF11O94913 1555 aaKnown RBP27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms