RNA–Protein interactions for RNA: ENST00000468338.5

COL4A6-205, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5

Gene COL4A6, Length 865 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-205ENST00000468338 RIMBP3BA6NNM3 1639 aa19.29■□□□□ 0.68
COL4A6-205ENST00000468338 RIMBP3Q9UFD9 1639 aa19.29■□□□□ 0.68
COL4A6-205ENST00000468338 ADAMTS12P58397 1594 aa19.28■□□□□ 0.68
COL4A6-205ENST00000468338 CNKSR2Q8WXI2 1034 aa19.28■□□□□ 0.68
COL4A6-205ENST00000468338 FHAD1B1AJZ9 1412 aa19.26■□□□□ 0.67
COL4A6-205ENST00000468338 GRIN2AQ12879 1464 aa19.25■□□□□ 0.67
COL4A6-205ENST00000468338 NUP160Q12769 1436 aa19.21■□□□□ 0.67
COL4A6-205ENST00000468338 KIF27Q86VH2 1401 aa19.21■□□□□ 0.67
COL4A6-205ENST00000468338 TRIM41Q8WV44 630 aa19.21■□□□□ 0.67
COL4A6-205ENST00000468338 IGF1RP08069 1367 aa19.19■□□□□ 0.66
COL4A6-205ENST00000468338 CEP170Q5SW79 1584 aa19.15■□□□□ 0.66
COL4A6-205ENST00000468338 ARAP1Q96P48 1450 aa19.14■□□□□ 0.65
COL4A6-205ENST00000468338 MSH5O43196 834 aa19.13■□□□□ 0.65
COL4A6-205ENST00000468338 CYB5RLQ6IPT4 315 aa19.11■□□□□ 0.65
COL4A6-205ENST00000468338 CUL7Q14999 1698 aa19.08■□□□□ 0.65
COL4A6-205ENST00000468338 SHROOM2Q13796 1616 aa19.07■□□□□ 0.64
COL4A6-205ENST00000468338 CARMIL1Q5VZK9 1371 aa19.04■□□□□ 0.64
COL4A6-205ENST00000468338 RUSC2Q8N2Y8 1516 aa19■□□□□ 0.63
COL4A6-205ENST00000468338 ERCC6L2Q5T890 1561 aa19■□□□□ 0.63
COL4A6-205ENST00000468338 JPH4Q96JJ6 628 aa18.99■□□□□ 0.63
COL4A6-205ENST00000468338 KIAA0586Q9BVV6 1533 aa18.98■□□□□ 0.63
COL4A6-205ENST00000468338 PRG4Q92954 1404 aaPredicted RBP18.93■□□□□ 0.62
COL4A6-205ENST00000468338 RAPGEF2Q9Y4G8 1499 aa18.9■□□□□ 0.62
COL4A6-205ENST00000468338 PRXQ9BXM0 1461 aa18.85■□□□□ 0.61
COL4A6-205ENST00000468338 ZBTB22O15209 634 aa18.85■□□□□ 0.61
COL4A6-205ENST00000468338 IQGAP2Q13576 1575 aa18.81■□□□□ 0.6
COL4A6-205ENST00000468338 EEA1Q15075 1411 aa18.77■□□□□ 0.6
COL4A6-205ENST00000468338 MAPK8IP2Q13387 824 aaPredicted RBP18.77■□□□□ 0.6
COL4A6-205ENST00000468338 UGGT2Q9NYU1 1516 aa18.75■□□□□ 0.59
COL4A6-205ENST00000468338 CARMIL2Q6F5E8 1435 aa18.74■□□□□ 0.59
COL4A6-205ENST00000468338 DISP1Q96F81 1524 aa18.73■□□□□ 0.59
COL4A6-205ENST00000468338 TNIKQ9UKE5 1360 aa18.7■□□□□ 0.58
COL4A6-205ENST00000468338 TRHP20396 242 aaPredicted RBP18.7■□□□□ 0.58
COL4A6-205ENST00000468338 PTPRGP23470 1445 aa18.7■□□□□ 0.58
COL4A6-205ENST00000468338 FOXD4L1Q9NU39 408 aa18.7■□□□□ 0.58
COL4A6-205ENST00000468338 CTTNBP2Q8WZ74 1663 aa18.69■□□□□ 0.58
COL4A6-205ENST00000468338 RNF216Q9NWF9 866 aaPredicted RBP18.68■□□□□ 0.58
COL4A6-205ENST00000468338 ADCY10Q96PN6 1610 aa18.67■□□□□ 0.58
COL4A6-205ENST00000468338 KIAA0556O60303 1618 aa18.64■□□□□ 0.57
COL4A6-205ENST00000468338 MAPKBP1O60336 1514 aa18.6■□□□□ 0.57
COL4A6-205ENST00000468338 UHRF1BP1LA0JNW5 1464 aa18.6■□□□□ 0.57
COL4A6-205ENST00000468338 GOLGA3Q08378 1498 aa18.59■□□□□ 0.57
COL4A6-205ENST00000468338 NPM1P06748 294 aaKnown RBP eCLIP18.59■□□□□ 0.57
COL4A6-205ENST00000468338 FAM9AQ8IZU1 332 aaPredicted RBP18.59■□□□□ 0.57
COL4A6-205ENST00000468338 KIF21BO75037 1637 aa18.58■□□□□ 0.56
COL4A6-205ENST00000468338 UACAQ9BZF9 1416 aa18.57■□□□□ 0.56
COL4A6-205ENST00000468338 ABCC2Q92887 1545 aa18.56■□□□□ 0.56
COL4A6-205ENST00000468338 TTBK1Q5TCY1 1321 aaPredicted RBP18.54■□□□□ 0.56
COL4A6-205ENST00000468338 KIF13AQ9H1H9 1805 aa18.53■□□□□ 0.56
COL4A6-205ENST00000468338 ABCC10Q5T3U5 1492 aa18.53■□□□□ 0.56
COL4A6-205ENST00000468338 KDM5BQ9UGL1 1544 aa18.51■□□□□ 0.55
COL4A6-205ENST00000468338 SAMD9Q5K651 1589 aa18.5■□□□□ 0.55
COL4A6-205ENST00000468338 ABCA8O94911 1581 aa18.47■□□□□ 0.55
COL4A6-205ENST00000468338 DIP2BQ9P265 1576 aa18.47■□□□□ 0.55
COL4A6-205ENST00000468338 PLB1Q6P1J6 1458 aa18.47■□□□□ 0.55
COL4A6-205ENST00000468338 FAM69CQ0P6D2 419 aa18.45■□□□□ 0.54
COL4A6-205ENST00000468338 ASXL2Q76L83 1435 aa18.44■□□□□ 0.54
COL4A6-205ENST00000468338 P3H3Q8IVL6 736 aa18.42■□□□□ 0.54
COL4A6-205ENST00000468338 ZCCHC11Q5TAX3 1644 aaKnown RBP18.41■□□□□ 0.54
COL4A6-205ENST00000468338 GLI2P10070 1586 aa18.38■□□□□ 0.53
COL4A6-205ENST00000468338 EFCAB5A4FU69 1503 aa18.38■□□□□ 0.53
COL4A6-205ENST00000468338 UBTFP17480 764 aaKnown RBP18.37■□□□□ 0.53
COL4A6-205ENST00000468338 EPRSP07814 1512 aaKnown RBP18.35■□□□□ 0.53
COL4A6-205ENST00000468338 DMRT2Q9Y5R5 561 aa18.35■□□□□ 0.53
COL4A6-205ENST00000468338 FHOD3Q2V2M9 1422 aa18.34■□□□□ 0.53
COL4A6-205ENST00000468338 HOXD11P31277 338 aaPredicted RBP18.33■□□□□ 0.52
COL4A6-205ENST00000468338 ATP10BO94823 1461 aa18.33■□□□□ 0.52
COL4A6-205ENST00000468338 WDR7Q9Y4E6 1490 aa18.33■□□□□ 0.52
COL4A6-205ENST00000468338 RANGAP1P46060 587 aaPredicted RBP18.32■□□□□ 0.52
COL4A6-205ENST00000468338 RAPGEF6Q8TEU7 1601 aa18.31■□□□□ 0.52
COL4A6-205ENST00000468338 NUP153P49790 1475 aaKnown RBP18.28■□□□□ 0.52
COL4A6-205ENST00000468338 ARHGAP35Q9NRY4 1499 aa18.28■□□□□ 0.52
COL4A6-205ENST00000468338 TSPOAP1O95153 1857 aa18.28■□□□□ 0.52
COL4A6-205ENST00000468338 PPRC1Q5VV67 1664 aaKnown RBP18.27■□□□□ 0.52
COL4A6-205ENST00000468338 MAP3K4Q9Y6R4 1608 aa18.27■□□□□ 0.51
COL4A6-205ENST00000468338 ARID3CA6NKF2 412 aa18.21■□□□□ 0.51
COL4A6-205ENST00000468338 FMN1Q68DA7 1419 aa18.21■□□□□ 0.51
COL4A6-205ENST00000468338 CFAP43Q8NDM7 1665 aa18.19■□□□□ 0.5
COL4A6-205ENST00000468338 KCNH8Q96L42 1107 aa18.19■□□□□ 0.5
COL4A6-205ENST00000468338 MAGI3Q5TCQ9 1506 aa18.18■□□□□ 0.5
COL4A6-205ENST00000468338 CD109Q6YHK3 1445 aa18.17■□□□□ 0.5
COL4A6-205ENST00000468338 KDM6BO15054 1643 aa18.17■□□□□ 0.5
COL4A6-205ENST00000468338 TEX14Q8IWB6 1497 aa18.17■□□□□ 0.5
COL4A6-205ENST00000468338 COL17A1Q9UMD9 1497 aaPredicted RBP18.14■□□□□ 0.5
COL4A6-205ENST00000468338 ABCA9Q8IUA7 1624 aa18.14■□□□□ 0.49
COL4A6-205ENST00000468338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.13■□□□□ 0.49
COL4A6-205ENST00000468338 HNRNPUL2Q1KMD3 747 aaKnown RBP18.13■□□□□ 0.49
COL4A6-205ENST00000468338 PLEKHD1A6NEE1 506 aa18.12■□□□□ 0.49
COL4A6-205ENST00000468338 HECW1Q76N89 1606 aa18.1■□□□□ 0.49
COL4A6-205ENST00000468338 CLIP1P30622 1438 aa18.1■□□□□ 0.49
COL4A6-205ENST00000468338 SLC4A2P04920 1241 aa18.1■□□□□ 0.49
COL4A6-205ENST00000468338 CDK13Q14004 1512 aaKnown RBP18.09■□□□□ 0.49
COL4A6-205ENST00000468338 CASKIN1Q8WXD9 1431 aa18.06■□□□□ 0.48
COL4A6-205ENST00000468338 PHLDB1Q86UU1 1377 aa18.04■□□□□ 0.48
COL4A6-205ENST00000468338 LRRIQ1Q96JM4 1722 aa18.03■□□□□ 0.48
COL4A6-205ENST00000468338 ARAP3Q8WWN8 1544 aa18.03■□□□□ 0.48
COL4A6-205ENST00000468338 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.03■□□□□ 0.48
COL4A6-205ENST00000468338 PCF11O94913 1555 aaKnown RBP18.02■□□□□ 0.48
COL4A6-205ENST00000468338 ATP1B4Q9UN42 357 aaPredicted RBP18.02■□□□□ 0.48
COL4A6-205ENST00000468338 NEO1Q92859 1461 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms