RNA–Protein interactions for RNA: ENST00000468164.1

C9orf3-212, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-212ENST00000468164 IGF1RP08069 1367 aa23.21■■□□□ 1.31
C9orf3-212ENST00000468164 JPH4Q96JJ6 628 aa23.19■■□□□ 1.3
C9orf3-212ENST00000468164 CARMIL1Q5VZK9 1371 aa23.1■■□□□ 1.29
C9orf3-212ENST00000468164 KIAA0586Q9BVV6 1533 aa23.09■■□□□ 1.29
C9orf3-212ENST00000468164 KIF13AQ9H1H9 1805 aa23.05■■□□□ 1.28
C9orf3-212ENST00000468164 TTBK1Q5TCY1 1321 aaPredicted RBP23■■□□□ 1.27
C9orf3-212ENST00000468164 IQGAP2Q13576 1575 aa22.99■■□□□ 1.27
C9orf3-212ENST00000468164 ADCY10Q96PN6 1610 aa22.99■■□□□ 1.27
C9orf3-212ENST00000468164 NPM1P06748 294 aaKnown RBP eCLIP22.95■■□□□ 1.26
C9orf3-212ENST00000468164 RAPGEF2Q9Y4G8 1499 aa22.93■■□□□ 1.26
C9orf3-212ENST00000468164 CTTNBP2Q8WZ74 1663 aa22.9■■□□□ 1.26
C9orf3-212ENST00000468164 CARMIL2Q6F5E8 1435 aa22.9■■□□□ 1.26
C9orf3-212ENST00000468164 PTPRGP23470 1445 aa22.87■■□□□ 1.25
C9orf3-212ENST00000468164 TSPOAP1O95153 1857 aa22.86■■□□□ 1.25
C9orf3-212ENST00000468164 MAPKBP1O60336 1514 aa22.85■■□□□ 1.25
C9orf3-212ENST00000468164 TNIKQ9UKE5 1360 aa22.83■■□□□ 1.25
C9orf3-212ENST00000468164 DIP2BQ9P265 1576 aa22.82■■□□□ 1.24
C9orf3-212ENST00000468164 FAM69CQ0P6D2 419 aa22.82■■□□□ 1.24
C9orf3-212ENST00000468164 DISP1Q96F81 1524 aa22.8■■□□□ 1.24
C9orf3-212ENST00000468164 ABCC10Q5T3U5 1492 aa22.79■■□□□ 1.24
C9orf3-212ENST00000468164 KIAA0556O60303 1618 aa22.78■■□□□ 1.24
C9orf3-212ENST00000468164 UGGT2Q9NYU1 1516 aa22.77■■□□□ 1.24
C9orf3-212ENST00000468164 ABCC2Q92887 1545 aa22.72■■□□□ 1.23
C9orf3-212ENST00000468164 UACAQ9BZF9 1416 aa22.69■■□□□ 1.22
C9orf3-212ENST00000468164 PRXQ9BXM0 1461 aa22.68■■□□□ 1.22
C9orf3-212ENST00000468164 ZCCHC11Q5TAX3 1644 aaKnown RBP22.67■■□□□ 1.22
C9orf3-212ENST00000468164 UHRF1BP1LA0JNW5 1464 aa22.66■■□□□ 1.22
C9orf3-212ENST00000468164 ASXL2Q76L83 1435 aa22.65■■□□□ 1.22
C9orf3-212ENST00000468164 GOLGA3Q08378 1498 aa22.63■■□□□ 1.21
C9orf3-212ENST00000468164 KDM6BO15054 1643 aa22.63■■□□□ 1.21
C9orf3-212ENST00000468164 AEBP2Q6ZN18 517 aaPredicted RBP22.62■■□□□ 1.21
C9orf3-212ENST00000468164 PLB1Q6P1J6 1458 aa22.6■■□□□ 1.21
C9orf3-212ENST00000468164 CSRNP3Q8WYN3 585 aa22.59■■□□□ 1.21
C9orf3-212ENST00000468164 KDM5BQ9UGL1 1544 aa22.58■■□□□ 1.21
C9orf3-212ENST00000468164 FAM9AQ8IZU1 332 aaPredicted RBP22.57■■□□□ 1.2
C9orf3-212ENST00000468164 PPRC1Q5VV67 1664 aaKnown RBP22.56■■□□□ 1.2
C9orf3-212ENST00000468164 P3H3Q8IVL6 736 aa22.54■■□□□ 1.2
C9orf3-212ENST00000468164 GLI2P10070 1586 aa22.54■■□□□ 1.2
C9orf3-212ENST00000468164 ABCA8O94911 1581 aa22.51■■□□□ 1.19
C9orf3-212ENST00000468164 MAP3K4Q9Y6R4 1608 aa22.5■■□□□ 1.19
C9orf3-212ENST00000468164 EEA1Q15075 1411 aa22.5■■□□□ 1.19
C9orf3-212ENST00000468164 RANGAP1P46060 587 aaPredicted RBP22.5■■□□□ 1.19
C9orf3-212ENST00000468164 EPRSP07814 1512 aaKnown RBP22.5■■□□□ 1.19
C9orf3-212ENST00000468164 SAMD9Q5K651 1589 aa22.46■■□□□ 1.19
C9orf3-212ENST00000468164 ARID3CA6NKF2 412 aa22.45■■□□□ 1.18
C9orf3-212ENST00000468164 WDR7Q9Y4E6 1490 aa22.45■■□□□ 1.18
C9orf3-212ENST00000468164 EHMT2Q96KQ7 1210 aa22.41■■□□□ 1.18
C9orf3-212ENST00000468164 KCNH8Q96L42 1107 aa22.41■■□□□ 1.18
C9orf3-212ENST00000468164 KIF21BO75037 1637 aa22.4■■□□□ 1.18
C9orf3-212ENST00000468164 CFAP43Q8NDM7 1665 aa22.39■■□□□ 1.18
C9orf3-212ENST00000468164 RAPGEF6Q8TEU7 1601 aa22.39■■□□□ 1.17
C9orf3-212ENST00000468164 TEX14Q8IWB6 1497 aa22.38■■□□□ 1.17
C9orf3-212ENST00000468164 CHIC1Q5VXU3 224 aa22.34■■□□□ 1.17
C9orf3-212ENST00000468164 FHOD3Q2V2M9 1422 aa22.32■■□□□ 1.16
C9orf3-212ENST00000468164 ATP10BO94823 1461 aa22.31■■□□□ 1.16
C9orf3-212ENST00000468164 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.31■■□□□ 1.16
C9orf3-212ENST00000468164 HNRNPUL2Q1KMD3 747 aaKnown RBP22.31■■□□□ 1.16
C9orf3-212ENST00000468164 CD109Q6YHK3 1445 aa22.3■■□□□ 1.16
C9orf3-212ENST00000468164 COL17A1Q9UMD9 1497 aaPredicted RBP22.29■■□□□ 1.16
C9orf3-212ENST00000468164 UBTFP17480 764 aaKnown RBP22.26■■□□□ 1.15
C9orf3-212ENST00000468164 EFCAB5A4FU69 1503 aa22.25■■□□□ 1.15
C9orf3-212ENST00000468164 MAGI3Q5TCQ9 1506 aa22.23■■□□□ 1.15
C9orf3-212ENST00000468164 NUP153P49790 1475 aaKnown RBP22.22■■□□□ 1.15
C9orf3-212ENST00000468164 ABCA9Q8IUA7 1624 aa22.21■■□□□ 1.15
C9orf3-212ENST00000468164 KDM4FA0A1W2PPD8 638 aa22.2■■□□□ 1.14
C9orf3-212ENST00000468164 ADGRL1O94910 1474 aa22.14■■□□□ 1.13
C9orf3-212ENST00000468164 ATP1B4Q9UN42 357 aaPredicted RBP22.11■■□□□ 1.13
C9orf3-212ENST00000468164 PLEKHD1A6NEE1 506 aa22.09■■□□□ 1.13
C9orf3-212ENST00000468164 CDK13Q14004 1512 aaKnown RBP22.09■■□□□ 1.13
C9orf3-212ENST00000468164 ARHGAP35Q9NRY4 1499 aa22.07■■□□□ 1.12
C9orf3-212ENST00000468164 HECW1Q76N89 1606 aa22.06■■□□□ 1.12
C9orf3-212ENST00000468164 ARAP3Q8WWN8 1544 aa22.06■■□□□ 1.12
C9orf3-212ENST00000468164 TTC37Q6PGP7 1564 aa22.04■■□□□ 1.12
C9orf3-212ENST00000468164 FMN1Q68DA7 1419 aa22.03■■□□□ 1.12
C9orf3-212ENST00000468164 LRRIQ1Q96JM4 1722 aa22.02■■□□□ 1.12
C9orf3-212ENST00000468164 NEO1Q92859 1461 aa22.02■■□□□ 1.12
C9orf3-212ENST00000468164 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.01■■□□□ 1.11
C9orf3-212ENST00000468164 CFAP74Q9C0B2 1584 aa21.99■■□□□ 1.11
C9orf3-212ENST00000468164 RAPGEF3O95398 923 aa21.99■■□□□ 1.11
C9orf3-212ENST00000468164 PHLDB1Q86UU1 1377 aa21.98■■□□□ 1.11
C9orf3-212ENST00000468164 MYO5CQ9NQX4 1742 aa21.96■■□□□ 1.11
C9orf3-212ENST00000468164 FRMPD1Q5SYB0 1578 aa21.95■■□□□ 1.11
C9orf3-212ENST00000468164 RICTORQ6R327 1708 aa21.95■■□□□ 1.1
C9orf3-212ENST00000468164 FANCAO15360 1455 aa21.94■■□□□ 1.1
C9orf3-212ENST00000468164 KIF14Q15058 1648 aa21.92■■□□□ 1.1
C9orf3-212ENST00000468164 PCF11O94913 1555 aaKnown RBP21.91■■□□□ 1.1
C9orf3-212ENST00000468164 AKNAQ7Z591 1439 aa21.9■■□□□ 1.1
C9orf3-212ENST00000468164 DENND4BO75064 1496 aaPredicted RBP21.89■■□□□ 1.09
C9orf3-212ENST00000468164 CDK11AQ9UQ88 783 aaPredicted RBP21.88■■□□□ 1.09
C9orf3-212ENST00000468164 ARID4BQ4LE39 1312 aaPredicted RBP21.84■■□□□ 1.09
C9orf3-212ENST00000468164 ARHGEF40Q8TER5 1519 aa21.84■■□□□ 1.09
C9orf3-212ENST00000468164 BCORL1Q5H9F3 1711 aa21.83■■□□□ 1.08
C9orf3-212ENST00000468164 CLIP1P30622 1438 aa21.82■■□□□ 1.08
C9orf3-212ENST00000468164 ADAMTSL3P82987 1691 aa21.82■■□□□ 1.08
C9orf3-212ENST00000468164 PLCH2O75038 1416 aa21.81■■□□□ 1.08
C9orf3-212ENST00000468164 TROQ12816 1431 aaPredicted RBP21.81■■□□□ 1.08
C9orf3-212ENST00000468164 HECW2Q9P2P5 1572 aa21.81■■□□□ 1.08
C9orf3-212ENST00000468164 CASKIN1Q8WXD9 1431 aa21.8■■□□□ 1.08
C9orf3-212ENST00000468164 CDC42BPBQ9Y5S2 1711 aa21.8■■□□□ 1.08
C9orf3-212ENST00000468164 ARHGAP5Q13017 1502 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms