RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 JPH4Q96JJ6 628 aa33.44■■■□□ 2.94
COL9A3-206ENST00000466532 IGF1RP08069 1367 aa33.41■■■□□ 2.94
COL9A3-206ENST00000466532 KIAA0586Q9BVV6 1533 aa33.3■■■□□ 2.92
COL9A3-206ENST00000466532 KIF13AQ9H1H9 1805 aa33.28■■■□□ 2.92
COL9A3-206ENST00000466532 CARMIL1Q5VZK9 1371 aa33.21■■■□□ 2.91
COL9A3-206ENST00000466532 ADCY10Q96PN6 1610 aa33.17■■■□□ 2.9
COL9A3-206ENST00000466532 NPM1P06748 294 aaKnown RBP eCLIP33.07■■■□□ 2.88
COL9A3-206ENST00000466532 MAPKBP1O60336 1514 aa33.07■■■□□ 2.88
COL9A3-206ENST00000466532 IQGAP2Q13576 1575 aa33.06■■■□□ 2.88
COL9A3-206ENST00000466532 ABCC10Q5T3U5 1492 aa32.99■■■□□ 2.87
COL9A3-206ENST00000466532 CARMIL2Q6F5E8 1435 aa32.98■■■□□ 2.87
COL9A3-206ENST00000466532 DIP2BQ9P265 1576 aa32.98■■■□□ 2.87
COL9A3-206ENST00000466532 PTPRGP23470 1445 aa32.96■■■□□ 2.87
COL9A3-206ENST00000466532 RAPGEF2Q9Y4G8 1499 aa32.95■■■□□ 2.87
COL9A3-206ENST00000466532 FAM69CQ0P6D2 419 aa32.93■■■□□ 2.86
COL9A3-206ENST00000466532 TTBK1Q5TCY1 1321 aaPredicted RBP32.92■■■□□ 2.86
COL9A3-206ENST00000466532 TNIKQ9UKE5 1360 aa32.92■■■□□ 2.86
COL9A3-206ENST00000466532 TSPOAP1O95153 1857 aa32.86■■■□□ 2.85
COL9A3-206ENST00000466532 DISP1Q96F81 1524 aa32.85■■■□□ 2.85
COL9A3-206ENST00000466532 CTTNBP2Q8WZ74 1663 aa32.85■■■□□ 2.85
COL9A3-206ENST00000466532 UGGT2Q9NYU1 1516 aa32.82■■■□□ 2.84
COL9A3-206ENST00000466532 ABCC2Q92887 1545 aa32.8■■■□□ 2.84
COL9A3-206ENST00000466532 AEBP2Q6ZN18 517 aaPredicted RBP32.79■■■□□ 2.84
COL9A3-206ENST00000466532 KIAA0556O60303 1618 aa32.77■■■□□ 2.84
COL9A3-206ENST00000466532 UHRF1BP1LA0JNW5 1464 aa32.75■■■□□ 2.83
COL9A3-206ENST00000466532 UACAQ9BZF9 1416 aa32.73■■■□□ 2.83
COL9A3-206ENST00000466532 KDM6BO15054 1643 aa32.69■■■□□ 2.82
COL9A3-206ENST00000466532 ASXL2Q76L83 1435 aa32.68■■■□□ 2.82
COL9A3-206ENST00000466532 PLB1Q6P1J6 1458 aa32.65■■■□□ 2.82
COL9A3-206ENST00000466532 ZCCHC11Q5TAX3 1644 aaKnown RBP32.63■■■□□ 2.81
COL9A3-206ENST00000466532 PRXQ9BXM0 1461 aa32.61■■■□□ 2.81
COL9A3-206ENST00000466532 GLI2P10070 1586 aa32.61■■■□□ 2.81
COL9A3-206ENST00000466532 KDM5BQ9UGL1 1544 aa32.61■■■□□ 2.81
COL9A3-206ENST00000466532 PPRC1Q5VV67 1664 aaKnown RBP32.59■■■□□ 2.81
COL9A3-206ENST00000466532 GOLGA3Q08378 1498 aa32.56■■■□□ 2.8
COL9A3-206ENST00000466532 MAP3K4Q9Y6R4 1608 aa32.48■■■□□ 2.79
COL9A3-206ENST00000466532 EPRSP07814 1512 aaKnown RBP32.48■■■□□ 2.79
COL9A3-206ENST00000466532 ABCA8O94911 1581 aa32.44■■■□□ 2.78
COL9A3-206ENST00000466532 WDR7Q9Y4E6 1490 aa32.38■■■□□ 2.77
COL9A3-206ENST00000466532 CSRNP3Q8WYN3 585 aa32.36■■■□□ 2.77
COL9A3-206ENST00000466532 TEX14Q8IWB6 1497 aa32.32■■■□□ 2.76
COL9A3-206ENST00000466532 SAMD9Q5K651 1589 aa32.28■■■□□ 2.76
COL9A3-206ENST00000466532 CFAP43Q8NDM7 1665 aa32.28■■■□□ 2.76
COL9A3-206ENST00000466532 EEA1Q15075 1411 aa32.28■■■□□ 2.76
COL9A3-206ENST00000466532 P3H3Q8IVL6 736 aa32.25■■■□□ 2.75
COL9A3-206ENST00000466532 COL17A1Q9UMD9 1497 aaPredicted RBP32.23■■■□□ 2.75
COL9A3-206ENST00000466532 FAM9AQ8IZU1 332 aaPredicted RBP32.22■■■□□ 2.75
COL9A3-206ENST00000466532 KDM4FA0A1W2PPD8 638 aa32.2■■■□□ 2.75
COL9A3-206ENST00000466532 KCNH8Q96L42 1107 aa32.18■■■□□ 2.74
COL9A3-206ENST00000466532 CD109Q6YHK3 1445 aa32.16■■■□□ 2.74
COL9A3-206ENST00000466532 RAPGEF6Q8TEU7 1601 aa32.15■■■□□ 2.74
COL9A3-206ENST00000466532 MAGI3Q5TCQ9 1506 aa32.14■■■□□ 2.74
COL9A3-206ENST00000466532 ATP10BO94823 1461 aa32.12■■■□□ 2.73
COL9A3-206ENST00000466532 ARID3CA6NKF2 412 aa32.12■■■□□ 2.73
COL9A3-206ENST00000466532 KIF21BO75037 1637 aa32.1■■■□□ 2.73
COL9A3-206ENST00000466532 RANGAP1P46060 587 aaPredicted RBP32.05■■■□□ 2.72
COL9A3-206ENST00000466532 ADGRL1O94910 1474 aa32.03■■■□□ 2.72
COL9A3-206ENST00000466532 ABCA9Q8IUA7 1624 aa32.02■■■□□ 2.72
COL9A3-206ENST00000466532 FHOD3Q2V2M9 1422 aa32■■■□□ 2.71
COL9A3-206ENST00000466532 NUP153P49790 1475 aaKnown RBP31.96■■■□□ 2.71
COL9A3-206ENST00000466532 EFCAB5A4FU69 1503 aa31.95■■■□□ 2.71
COL9A3-206ENST00000466532 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.93■■■□□ 2.7
COL9A3-206ENST00000466532 HNRNPUL2Q1KMD3 747 aaKnown RBP31.93■■■□□ 2.7
COL9A3-206ENST00000466532 ARAP3Q8WWN8 1544 aa31.89■■■□□ 2.7
COL9A3-206ENST00000466532 CHIC1Q5VXU3 224 aa31.84■■■□□ 2.69
COL9A3-206ENST00000466532 EHMT2Q96KQ7 1210 aa31.8■■■□□ 2.68
COL9A3-206ENST00000466532 PHLDB1Q86UU1 1377 aa31.8■■■□□ 2.68
COL9A3-206ENST00000466532 NEO1Q92859 1461 aa31.78■■■□□ 2.68
COL9A3-206ENST00000466532 UBTFP17480 764 aaKnown RBP31.76■■■□□ 2.67
COL9A3-206ENST00000466532 PLEKHD1A6NEE1 506 aa31.75■■■□□ 2.67
COL9A3-206ENST00000466532 CDK13Q14004 1512 aaKnown RBP31.69■■■□□ 2.66
COL9A3-206ENST00000466532 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.69■■■□□ 2.66
COL9A3-206ENST00000466532 FRMPD1Q5SYB0 1578 aa31.68■■■□□ 2.66
COL9A3-206ENST00000466532 TTC37Q6PGP7 1564 aa31.67■■■□□ 2.66
COL9A3-206ENST00000466532 CFAP74Q9C0B2 1584 aa31.67■■■□□ 2.66
COL9A3-206ENST00000466532 RAPGEF3O95398 923 aa31.66■■■□□ 2.66
COL9A3-206ENST00000466532 ARHGAP35Q9NRY4 1499 aa31.65■■■□□ 2.66
COL9A3-206ENST00000466532 HECW1Q76N89 1606 aa31.65■■■□□ 2.66
COL9A3-206ENST00000466532 FMN1Q68DA7 1419 aa31.63■■■□□ 2.65
COL9A3-206ENST00000466532 RICTORQ6R327 1708 aa31.63■■■□□ 2.65
COL9A3-206ENST00000466532 FANCAO15360 1455 aa31.59■■■□□ 2.65
COL9A3-206ENST00000466532 HECW2Q9P2P5 1572 aa31.59■■■□□ 2.65
COL9A3-206ENST00000466532 AKNAQ7Z591 1439 aa31.57■■■□□ 2.64
COL9A3-206ENST00000466532 ATP1B4Q9UN42 357 aaPredicted RBP31.56■■■□□ 2.64
COL9A3-206ENST00000466532 ADAMTSL3P82987 1691 aa31.55■■■□□ 2.64
COL9A3-206ENST00000466532 DENND4BO75064 1496 aaPredicted RBP31.55■■■□□ 2.64
COL9A3-206ENST00000466532 LRRIQ1Q96JM4 1722 aa31.54■■■□□ 2.64
COL9A3-206ENST00000466532 BCORL1Q5H9F3 1711 aa31.52■■■□□ 2.64
COL9A3-206ENST00000466532 MYO5CQ9NQX4 1742 aa31.52■■■□□ 2.64
COL9A3-206ENST00000466532 ARHGEF40Q8TER5 1519 aa31.51■■■□□ 2.63
COL9A3-206ENST00000466532 KIF14Q15058 1648 aa31.45■■■□□ 2.62
COL9A3-206ENST00000466532 ZMYM4Q5VZL5 1548 aa31.44■■■□□ 2.62
COL9A3-206ENST00000466532 PLCH2O75038 1416 aa31.43■■■□□ 2.62
COL9A3-206ENST00000466532 CDK11AQ9UQ88 783 aaPredicted RBP31.43■■■□□ 2.62
COL9A3-206ENST00000466532 MADDQ8WXG6 1647 aa31.42■■■□□ 2.62
COL9A3-206ENST00000466532 ARID4BQ4LE39 1312 aaPredicted RBP31.42■■■□□ 2.62
COL9A3-206ENST00000466532 PTPRMP28827 1452 aa31.4■■■□□ 2.62
COL9A3-206ENST00000466532 ZFYVE16Q7Z3T8 1539 aa31.39■■■□□ 2.61
COL9A3-206ENST00000466532 PCF11O94913 1555 aaKnown RBP31.38■■■□□ 2.61
COL9A3-206ENST00000466532 TROQ12816 1431 aaPredicted RBP31.37■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms