RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 IQGAP2Q13576 1575 aa18.25■□□□□ 0.51
VCP-204ENST00000466100 SHROOM2Q13796 1616 aa18.23■□□□□ 0.51
VCP-204ENST00000466100 LOC105371045A0A1W2PR82 267 aa18.21■□□□□ 0.51
VCP-204ENST00000466100 TNIKQ9UKE5 1360 aa18.2■□□□□ 0.5
VCP-204ENST00000466100 EHMT2Q96KQ7 1210 aa18.2■□□□□ 0.5
VCP-204ENST00000466100 OSCARQ8IYS5 282 aa18.18■□□□□ 0.5
VCP-204ENST00000466100 UGGT2Q9NYU1 1516 aa18.18■□□□□ 0.5
VCP-204ENST00000466100 UBTFP17480 764 aaKnown RBP18.16■□□□□ 0.5
VCP-204ENST00000466100 SAMD9Q5K651 1589 aa18.14■□□□□ 0.49
VCP-204ENST00000466100 DISP1Q96F81 1524 aa18.1■□□□□ 0.49
VCP-204ENST00000466100 KIAA0556O60303 1618 aa18.09■□□□□ 0.49
VCP-204ENST00000466100 EFCAB5A4FU69 1503 aa18.09■□□□□ 0.49
VCP-204ENST00000466100 ERCC6L2Q5T890 1561 aa18.08■□□□□ 0.49
VCP-204ENST00000466100 JPH4Q96JJ6 628 aa18.08■□□□□ 0.48
VCP-204ENST00000466100 CEP162Q5TB80 1403 aa18.07■□□□□ 0.48
VCP-204ENST00000466100 ARHGAP35Q9NRY4 1499 aa18.06■□□□□ 0.48
VCP-204ENST00000466100 PRG4Q92954 1404 aaPredicted RBP18.05■□□□□ 0.48
VCP-204ENST00000466100 CLIP1P30622 1438 aa18.03■□□□□ 0.48
VCP-204ENST00000466100 ARHGEF11O15085 1522 aa18.02■□□□□ 0.47
VCP-204ENST00000466100 RIMBP3CA6NJZ7 1639 aa18■□□□□ 0.47
VCP-204ENST00000466100 RIMBP3BA6NNM3 1639 aa18■□□□□ 0.47
VCP-204ENST00000466100 RIMBP3Q9UFD9 1639 aa18■□□□□ 0.47
VCP-204ENST00000466100 CARMIL2Q6F5E8 1435 aa17.99■□□□□ 0.47
VCP-204ENST00000466100 ARAP1Q96P48 1450 aa17.99■□□□□ 0.47
VCP-204ENST00000466100 FHOD3Q2V2M9 1422 aa17.97■□□□□ 0.47
VCP-204ENST00000466100 RANGAP1P46060 587 aaPredicted RBP17.95■□□□□ 0.46
VCP-204ENST00000466100 P3H3Q8IVL6 736 aa17.89■□□□□ 0.45
VCP-204ENST00000466100 ABCA8O94911 1581 aa17.87■□□□□ 0.45
VCP-204ENST00000466100 DNAJC5Q9H3Z4 198 aa17.86■□□□□ 0.45
VCP-204ENST00000466100 PTPRGP23470 1445 aa17.86■□□□□ 0.45
VCP-204ENST00000466100 PCF11O94913 1555 aaKnown RBP17.86■□□□□ 0.45
VCP-204ENST00000466100 FMN1Q68DA7 1419 aa17.85■□□□□ 0.45
VCP-204ENST00000466100 RAPGEF6Q8TEU7 1601 aa17.85■□□□□ 0.45
VCP-204ENST00000466100 VPS8Q8N3P4 1428 aa17.83■□□□□ 0.45
VCP-204ENST00000466100 PLB1Q6P1J6 1458 aa17.82■□□□□ 0.44
VCP-204ENST00000466100 LRRIQ1Q96JM4 1722 aa17.82■□□□□ 0.44
VCP-204ENST00000466100 ADCY10Q96PN6 1610 aa17.82■□□□□ 0.44
VCP-204ENST00000466100 ABCC2Q92887 1545 aa17.81■□□□□ 0.44
VCP-204ENST00000466100 UHRF1BP1LA0JNW5 1464 aa17.8■□□□□ 0.44
VCP-204ENST00000466100 FYCO1Q9BQS8 1478 aa17.8■□□□□ 0.44
VCP-204ENST00000466100 CASKIN1Q8WXD9 1431 aa17.79■□□□□ 0.44
VCP-204ENST00000466100 UACAQ9BZF9 1416 aa17.79■□□□□ 0.44
VCP-204ENST00000466100 HECW1Q76N89 1606 aa17.79■□□□□ 0.44
VCP-204ENST00000466100 NUP153P49790 1475 aaKnown RBP17.77■□□□□ 0.44
VCP-204ENST00000466100 TTBK1Q5TCY1 1321 aaPredicted RBP17.75■□□□□ 0.43
VCP-204ENST00000466100 CFAP43Q8NDM7 1665 aa17.72■□□□□ 0.43
VCP-204ENST00000466100 ZCCHC11Q5TAX3 1644 aaKnown RBP17.72■□□□□ 0.43
VCP-204ENST00000466100 KDM5BQ9UGL1 1544 aa17.71■□□□□ 0.43
VCP-204ENST00000466100 EPRSP07814 1512 aaKnown RBP17.7■□□□□ 0.42
VCP-204ENST00000466100 CYB5RLQ6IPT4 315 aa17.69■□□□□ 0.42
VCP-204ENST00000466100 CDK13Q14004 1512 aaKnown RBP17.68■□□□□ 0.42
VCP-204ENST00000466100 ATP10BO94823 1461 aa17.68■□□□□ 0.42
VCP-204ENST00000466100 CCDC18Q5T9S5 1454 aa17.68■□□□□ 0.42
VCP-204ENST00000466100 TIAM1Q13009 1591 aa17.66■□□□□ 0.42
VCP-204ENST00000466100 MAP3K1Q13233 1512 aa17.66■□□□□ 0.42
VCP-204ENST00000466100 MAGI3Q5TCQ9 1506 aa17.61■□□□□ 0.41
VCP-204ENST00000466100 MAPKBP1O60336 1514 aa17.6■□□□□ 0.41
VCP-204ENST00000466100 ATP1B4Q9UN42 357 aaPredicted RBP17.58■□□□□ 0.4
VCP-204ENST00000466100 ARID3CA6NKF2 412 aa17.57■□□□□ 0.4
VCP-204ENST00000466100 EHBP1L1Q8N3D4 1523 aa17.55■□□□□ 0.4
VCP-204ENST00000466100 LRRC9Q6ZRR7 1453 aa17.54■□□□□ 0.4
VCP-204ENST00000466100 ASXL2Q76L83 1435 aa17.54■□□□□ 0.4
VCP-204ENST00000466100 WDR7Q9Y4E6 1490 aa17.53■□□□□ 0.4
VCP-204ENST00000466100 TROQ12816 1431 aaPredicted RBP17.52■□□□□ 0.4
VCP-204ENST00000466100 KIF14Q15058 1648 aa17.51■□□□□ 0.39
VCP-204ENST00000466100 NPM1P06748 294 aaKnown RBP eCLIP17.5■□□□□ 0.39
VCP-204ENST00000466100 SUPT6HQ7KZ85 1726 aaKnown RBP17.48■□□□□ 0.39
VCP-204ENST00000466100 KANK4Q5T7N3 995 aaPredicted RBP17.48■□□□□ 0.39
VCP-204ENST00000466100 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.47■□□□□ 0.39
VCP-204ENST00000466100 HNRNPUL2Q1KMD3 747 aaKnown RBP17.47■□□□□ 0.39
VCP-204ENST00000466100 DIP2BQ9P265 1576 aa17.47■□□□□ 0.39
VCP-204ENST00000466100 KIF13AQ9H1H9 1805 aa17.47■□□□□ 0.39
VCP-204ENST00000466100 MTUS2Q5JR59 1369 aa17.46■□□□□ 0.39
VCP-204ENST00000466100 APLP2Q06481 763 aa17.46■□□□□ 0.39
VCP-204ENST00000466100 CDK11AQ9UQ88 783 aaPredicted RBP17.46■□□□□ 0.39
VCP-204ENST00000466100 ABCA9Q8IUA7 1624 aa17.46■□□□□ 0.39
VCP-204ENST00000466100 TTC37Q6PGP7 1564 aa17.45■□□□□ 0.38
VCP-204ENST00000466100 ABCC10Q5T3U5 1492 aa17.44■□□□□ 0.38
VCP-204ENST00000466100 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.44■□□□□ 0.38
VCP-204ENST00000466100 PLEKHD1A6NEE1 506 aa17.44■□□□□ 0.38
VCP-204ENST00000466100 GLI2P10070 1586 aa17.44■□□□□ 0.38
VCP-204ENST00000466100 CDC42BPAQ5VT25 1732 aa17.42■□□□□ 0.38
VCP-204ENST00000466100 NCOA2Q15596 1464 aa17.41■□□□□ 0.38
VCP-204ENST00000466100 MAP3K4Q9Y6R4 1608 aa17.4■□□□□ 0.38
VCP-204ENST00000466100 MYO5CQ9NQX4 1742 aa17.4■□□□□ 0.38
VCP-204ENST00000466100 PREX2Q70Z35 1606 aa17.38■□□□□ 0.37
VCP-204ENST00000466100 ITSN2Q9NZM3 1697 aa17.37■□□□□ 0.37
VCP-204ENST00000466100 CDC42BPBQ9Y5S2 1711 aa17.37■□□□□ 0.37
VCP-204ENST00000466100 PPARGC1BQ86YN6 1023 aaKnown RBP17.35■□□□□ 0.37
VCP-204ENST00000466100 KCNH8Q96L42 1107 aa17.35■□□□□ 0.37
VCP-204ENST00000466100 PPRC1Q5VV67 1664 aaKnown RBP17.35■□□□□ 0.37
VCP-204ENST00000466100 ARAP3Q8WWN8 1544 aa17.34■□□□□ 0.37
VCP-204ENST00000466100 GPATCH8Q9UKJ3 1502 aaKnown RBP17.33■□□□□ 0.37
VCP-204ENST00000466100 PHLDB1Q86UU1 1377 aa17.33■□□□□ 0.36
VCP-204ENST00000466100 MYOM3Q5VTT5 1437 aa17.3■□□□□ 0.36
VCP-204ENST00000466100 TSPOAP1O95153 1857 aa17.3■□□□□ 0.36
VCP-204ENST00000466100 PLCH2O75038 1416 aa17.3■□□□□ 0.36
VCP-204ENST00000466100 CCNB3Q8WWL7 1395 aa17.28■□□□□ 0.36
VCP-204ENST00000466100 FAM69CQ0P6D2 419 aa17.28■□□□□ 0.36
VCP-204ENST00000466100 CD109Q6YHK3 1445 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms