RNA–Protein interactions for RNA: ENST00000466032.1

CHMP3-206, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 436 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-206ENST00000466032 METRNQ9UJH8 293 aa10.83□□□□□ -0.68
CHMP3-206ENST00000466032 ZRANB1Q9UGI0 708 aa10.82□□□□□ -0.68
CHMP3-206ENST00000466032 SCUBE2Q9NQ36 999 aa10.8□□□□□ -0.68
CHMP3-206ENST00000466032 C7P10643 843 aa10.79□□□□□ -0.68
CHMP3-206ENST00000466032 PABPN1Q86U42 306 aaKnown RBP eCLIP10.77□□□□□ -0.69
CHMP3-206ENST00000466032 SLC39A7Q92504 469 aa10.77□□□□□ -0.69
CHMP3-206ENST00000466032 ASTLQ6HA08 431 aaPredicted RBP10.73□□□□□ -0.69
CHMP3-206ENST00000466032 BAZ1AQ9NRL2 1556 aaPredicted RBP10.73□□□□□ -0.69
CHMP3-206ENST00000466032 ZNF692Q9BU19 519 aaPredicted RBP10.7□□□□□ -0.7
CHMP3-206ENST00000466032 CECR2Q9BXF3 1484 aa10.63□□□□□ -0.71
CHMP3-206ENST00000466032 ATMINO43313 823 aaPredicted RBP10.63□□□□□ -0.71
CHMP3-206ENST00000466032 FBLN2P98095 1184 aa10.63□□□□□ -0.71
CHMP3-206ENST00000466032 SMARCA4P51532 1647 aa10.62□□□□□ -0.71
CHMP3-206ENST00000466032 RSF1Q96T23 1441 aaPredicted RBP10.62□□□□□ -0.71
CHMP3-206ENST00000466032 ST18O60284 1047 aa10.59□□□□□ -0.71
CHMP3-206ENST00000466032 EIF4G1Q04637 1599 aaKnown RBP10.58□□□□□ -0.72
CHMP3-206ENST00000466032 MROH2BQ7Z745 1585 aa10.58□□□□□ -0.72
CHMP3-206ENST00000466032 PEG3Q9GZU2 1588 aa10.58□□□□□ -0.72
CHMP3-206ENST00000466032 SMARCA2P51531 1590 aa10.57□□□□□ -0.72
CHMP3-206ENST00000466032 SUPT5HO00267 1087 aaKnown RBP10.55□□□□□ -0.72
CHMP3-206ENST00000466032 PHF12Q96QT6 1004 aa10.55□□□□□ -0.72
CHMP3-206ENST00000466032 POTEFA5A3E0 1075 aa10.53□□□□□ -0.72
CHMP3-206ENST00000466032 NCAPD3P42695 1498 aa10.5□□□□□ -0.73
CHMP3-206ENST00000466032 ATAD2BQ9ULI0 1458 aa10.5□□□□□ -0.73
CHMP3-206ENST00000466032 HMGXB3Q12766 1538 aa10.48□□□□□ -0.73
CHMP3-206ENST00000466032 MKRN4PQ13434 485 aaPredicted RBP10.47□□□□□ -0.73
CHMP3-206ENST00000466032 WIZO95785 1651 aa10.47□□□□□ -0.73
CHMP3-206ENST00000466032 KCNA4P22459 653 aa10.46□□□□□ -0.73
CHMP3-206ENST00000466032 TOP2AP11388 1531 aaKnown RBP10.46□□□□□ -0.74
CHMP3-206ENST00000466032 BAZ1BQ9UIG0 1483 aaKnown RBP10.45□□□□□ -0.74
CHMP3-206ENST00000466032 CC2D2AQ9P2K1 1620 aa10.44□□□□□ -0.74
CHMP3-206ENST00000466032 TMEM121BQ9BXQ6 578 aaPredicted RBP10.4□□□□□ -0.74
CHMP3-206ENST00000466032 PAK3O75914 559 aaPredicted RBP10.39□□□□□ -0.75
CHMP3-206ENST00000466032 MS4A3Q96HJ5 214 aa10.39□□□□□ -0.75
CHMP3-206ENST00000466032 ATN1P54259 1190 aaPredicted RBP10.38□□□□□ -0.75
CHMP3-206ENST00000466032 CREBZFQ9NS37 354 aa10.35□□□□□ -0.75
CHMP3-206ENST00000466032 CCDC88BA6NC98 1476 aa10.3□□□□□ -0.76
CHMP3-206ENST00000466032 KRTAP3-3Q9BYR6 98 aa10.28□□□□□ -0.76
CHMP3-206ENST00000466032 KRTAP3-2Q9BYR7 98 aa10.28□□□□□ -0.76
CHMP3-206ENST00000466032 SLAIN1Q8ND83 568 aa10.25□□□□□ -0.77
CHMP3-206ENST00000466032 FOXD4L1Q9NU39 408 aa10.24□□□□□ -0.77
CHMP3-206ENST00000466032 COLQQ9Y215 455 aaPredicted RBP10.23□□□□□ -0.77
CHMP3-206ENST00000466032 CADPSQ9ULU8 1353 aa10.21□□□□□ -0.78
CHMP3-206ENST00000466032 CFTRP13569 1480 aa10.2□□□□□ -0.78
CHMP3-206ENST00000466032 LAMC3Q9Y6N6 1575 aa10.18□□□□□ -0.78
CHMP3-206ENST00000466032 MARVELD3Q96A59 401 aa10.17□□□□□ -0.78
CHMP3-206ENST00000466032 BMP2KQ9NSY1 1161 aaPredicted RBP10.16□□□□□ -0.78
CHMP3-206ENST00000466032 ATXN8OSP0DMR3 200 aa10.15□□□□□ -0.78
CHMP3-206ENST00000466032 PDS5BQ9NTI5 1447 aa10.13□□□□□ -0.79
CHMP3-206ENST00000466032 PRDM2Q13029 1718 aa10.12□□□□□ -0.79
CHMP3-206ENST00000466032 SEC24BO95487 1268 aa10.1□□□□□ -0.79
CHMP3-206ENST00000466032 POTEB3A0JP26 581 aa10.08□□□□□ -0.8
CHMP3-206ENST00000466032 SNPHO15079 494 aa10.08□□□□□ -0.8
CHMP3-206ENST00000466032 POTEBQ6S5H4 581 aa10.08□□□□□ -0.8
CHMP3-206ENST00000466032 ABCC8Q09428 1581 aa10.06□□□□□ -0.8
CHMP3-206ENST00000466032 NPM1P06748 294 aaKnown RBP eCLIP10.05□□□□□ -0.8
CHMP3-206ENST00000466032 TIE1P35590 1138 aa10.05□□□□□ -0.8
CHMP3-206ENST00000466032 MNX1P50219 401 aaPredicted RBP10.05□□□□□ -0.8
CHMP3-206ENST00000466032 FANCD2Q9BXW9 1451 aa10.04□□□□□ -0.8
CHMP3-206ENST00000466032 TRIM41Q8WV44 630 aa10.04□□□□□ -0.8
CHMP3-206ENST00000466032 WRNQ14191 1432 aaPredicted RBP eCLIP10.04□□□□□ -0.8
CHMP3-206ENST00000466032 CEP164Q9UPV0 1460 aa10.03□□□□□ -0.8
CHMP3-206ENST00000466032 IER5LQ5T953 404 aa10.02□□□□□ -0.81
CHMP3-206ENST00000466032 RNF166Q96A37 237 aaPredicted RBP10.02□□□□□ -0.81
CHMP3-206ENST00000466032 TRPC6Q9Y210 931 aa10.02□□□□□ -0.81
CHMP3-206ENST00000466032 HS3ST6Q96QI5 342 aa10.01□□□□□ -0.81
CHMP3-206ENST00000466032 NESP48681 1621 aa10□□□□□ -0.81
CHMP3-206ENST00000466032 TOP2BQ02880 1626 aa9.97□□□□□ -0.81
CHMP3-206ENST00000466032 EMP3P54852 163 aa9.97□□□□□ -0.81
CHMP3-206ENST00000466032 KIF12Q96FN5 646 aa9.97□□□□□ -0.81
CHMP3-206ENST00000466032 ERCC6Q03468 1493 aa9.96□□□□□ -0.82
CHMP3-206ENST00000466032 BIVM-ERCC5R4GMW8 1640 aa9.96□□□□□ -0.82
CHMP3-206ENST00000466032 DNMBPQ6XZF7 1577 aa9.95□□□□□ -0.82
CHMP3-206ENST00000466032 MRC2Q9UBG0 1479 aa9.94□□□□□ -0.82
CHMP3-206ENST00000466032 STAG3Q9UJ98 1225 aa9.94□□□□□ -0.82
CHMP3-206ENST00000466032 EEA1Q15075 1411 aa9.93□□□□□ -0.82
CHMP3-206ENST00000466032 TTLL13PA6NNM8 815 aa9.93□□□□□ -0.82
CHMP3-206ENST00000466032 CCDC61Q9Y6R9 512 aa9.93□□□□□ -0.82
CHMP3-206ENST00000466032 CUX1P39880 1505 aa9.92□□□□□ -0.82
CHMP3-206ENST00000466032 TOPBP1Q92547 1522 aa9.92□□□□□ -0.82
CHMP3-206ENST00000466032 KIF21AQ7Z4S6 1674 aa9.91□□□□□ -0.82
CHMP3-206ENST00000466032 SYNJ1O43426 1573 aa9.91□□□□□ -0.82
CHMP3-206ENST00000466032 FAM205CA6NFA0 338 aa9.89□□□□□ -0.83
CHMP3-206ENST00000466032 WDR62O43379 1518 aa9.88□□□□□ -0.83
CHMP3-206ENST00000466032 URB2Q14146 1524 aaKnown RBP9.88□□□□□ -0.83
CHMP3-206ENST00000466032 FGD5Q6ZNL6 1462 aa9.86□□□□□ -0.83
CHMP3-206ENST00000466032 SOGA1O94964 1423 aa9.85□□□□□ -0.83
CHMP3-206ENST00000466032 POLA1P09884 1462 aaPredicted RBP9.85□□□□□ -0.83
CHMP3-206ENST00000466032 KIF27Q86VH2 1401 aa9.84□□□□□ -0.83
CHMP3-206ENST00000466032 TRIM35Q9UPQ4 493 aa9.84□□□□□ -0.83
CHMP3-206ENST00000466032 WDR97A6NE52 1622 aa9.84□□□□□ -0.83
CHMP3-206ENST00000466032 THOC2Q8NI27 1593 aaKnown RBP9.84□□□□□ -0.83
CHMP3-206ENST00000466032 ABCA10Q8WWZ4 1543 aa9.83□□□□□ -0.84
CHMP3-206ENST00000466032 MYT1LQ9UL68 1186 aa9.83□□□□□ -0.84
CHMP3-206ENST00000466032 IFT140Q96RY7 1462 aa9.83□□□□□ -0.84
CHMP3-206ENST00000466032 CSRNP3Q8WYN3 585 aa9.8□□□□□ -0.84
CHMP3-206ENST00000466032 CUX2O14529 1486 aa9.79□□□□□ -0.84
CHMP3-206ENST00000466032 MAP3K13O43283 966 aa9.77□□□□□ -0.85
CHMP3-206ENST00000466032 TARBP1Q13395 1621 aaKnown RBP9.76□□□□□ -0.85
CHMP3-206ENST00000466032 TSPYL2Q9H2G4 693 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms