RNA–Protein interactions for RNA: ENST00000466032.1

CHMP3-206, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 436 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-206ENST00000466032 AEBP2Q6ZN18 517 aaPredicted RBP22.54■■□□□ 1.2
CHMP3-206ENST00000466032 CHIC1Q5VXU3 224 aa20.98■□□□□ 0.95
CHMP3-206ENST00000466032 POTEDQ86YR6 584 aa19.78■□□□□ 0.76
CHMP3-206ENST00000466032 SENP3Q9H4L4 574 aaPredicted RBP19.43■□□□□ 0.7
CHMP3-206ENST00000466032 PHF23Q9BUL5 403 aaPredicted RBP18.96■□□□□ 0.63
CHMP3-206ENST00000466032 FOXD1Q16676 465 aa18.31■□□□□ 0.52
CHMP3-206ENST00000466032 MSH5O43196 834 aa17.69■□□□□ 0.42
CHMP3-206ENST00000466032 PIAS4Q8N2W9 510 aaPredicted RBP16.65■□□□□ 0.26
CHMP3-206ENST00000466032 CACNB1Q02641 598 aaPredicted RBP15.99■□□□□ 0.15
CHMP3-206ENST00000466032 PPP6R1Q9UPN7 881 aa15.98■□□□□ 0.15
CHMP3-206ENST00000466032 ADRA2BP18089 450 aa15.77■□□□□ 0.12
CHMP3-206ENST00000466032 PLPPR3Q6T4P5 718 aa15.25■□□□□ 0.03
CHMP3-206ENST00000466032 DMRT2Q9Y5R5 561 aa15.21■□□□□ 0.03
CHMP3-206ENST00000466032 POTEHQ6S545 545 aa15.19■□□□□ 0.02
CHMP3-206ENST00000466032 RNF39Q9H2S5 420 aa14.99□□□□□ -0.01
CHMP3-206ENST00000466032 MAPK8IP2Q13387 824 aaPredicted RBP14.95□□□□□ -0.02
CHMP3-206ENST00000466032 C1QBPQ07021 282 aaKnown RBP14.68□□□□□ -0.06
CHMP3-206ENST00000466032 SCAF1Q9H7N4 1312 aaKnown RBP14.45□□□□□ -0.1
CHMP3-206ENST00000466032 DCAF8L1A6NGE4 600 aa14.43□□□□□ -0.1
CHMP3-206ENST00000466032 HOXD11P31277 338 aaPredicted RBP14.12□□□□□ -0.15
CHMP3-206ENST00000466032 DNAJC5BQ9UF47 199 aa14.02□□□□□ -0.17
CHMP3-206ENST00000466032 NISCHQ9Y2I1 1504 aa13.81□□□□□ -0.2
CHMP3-206ENST00000466032 RNF216Q9NWF9 866 aaPredicted RBP13.57□□□□□ -0.24
CHMP3-206ENST00000466032 SP7Q8TDD2 431 aaPredicted RBP13.54□□□□□ -0.24
CHMP3-206ENST00000466032 DSG3P32926 999 aa13.52□□□□□ -0.25
CHMP3-206ENST00000466032 CNKSR2Q8WXI2 1034 aa13.28□□□□□ -0.28
CHMP3-206ENST00000466032 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.27□□□□□ -0.299e-8■■□□□ 14.4
CHMP3-206ENST00000466032 CHRDL2Q6WN34 429 aa13.2□□□□□ -0.3
CHMP3-206ENST00000466032 PPP4R3CPQ6ZMV5 832 aa13.16□□□□□ -0.3
CHMP3-206ENST00000466032 SPINK5Q9NQ38 1064 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-206ENST00000466032 CAPN15O75808 1086 aa13.11□□□□□ -0.31
CHMP3-206ENST00000466032 PLSCR2Q9NRY7 297 aa12.98□□□□□ -0.33
CHMP3-206ENST00000466032 U3KPZ7 1027 aaPredicted RBP12.93□□□□□ -0.34
CHMP3-206ENST00000466032 RBM42Q9BTD8 480 aaKnown RBP12.9□□□□□ -0.34
CHMP3-206ENST00000466032 HAX1O00165 279 aa12.67□□□□□ -0.38
CHMP3-206ENST00000466032 ABCB7O75027 752 aa12.67□□□□□ -0.38
CHMP3-206ENST00000466032 LHX8Q68G74 356 aa12.66□□□□□ -0.38
CHMP3-206ENST00000466032 PIP4P2Q8N4L2 257 aa12.58□□□□□ -0.4
CHMP3-206ENST00000466032 ZNF219Q9P2Y4 722 aaPredicted RBP12.55□□□□□ -0.4
CHMP3-206ENST00000466032 TRHP20396 242 aaPredicted RBP12.54□□□□□ -0.4
CHMP3-206ENST00000466032 EVX2Q03828 476 aa12.5□□□□□ -0.41
CHMP3-206ENST00000466032 APLP2Q06481 763 aa12.36□□□□□ -0.43
CHMP3-206ENST00000466032 FXR2P51116 673 aaKnown RBP eCLIP12.33□□□□□ -0.44
CHMP3-206ENST00000466032 AKT1S1Q96B36 256 aa12.32□□□□□ -0.44
CHMP3-206ENST00000466032 REM2Q8IYK8 340 aaPredicted RBP12.19□□□□□ -0.46
CHMP3-206ENST00000466032 NCBP3Q53F19 620 aaKnown RBP12.18□□□□□ -0.46
CHMP3-206ENST00000466032 CCDC180Q9P1Z9 1646 aa12.18□□□□□ -0.46
CHMP3-206ENST00000466032 GABBR2O75899 941 aa12.13□□□□□ -0.47
CHMP3-206ENST00000466032 PITPNM1O00562 1244 aa12.06□□□□□ -0.48
CHMP3-206ENST00000466032 NPM3O75607 178 aaKnown RBP12.05□□□□□ -0.48
CHMP3-206ENST00000466032 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.02□□□□□ -0.49
CHMP3-206ENST00000466032 HNRNPUL2Q1KMD3 747 aaKnown RBP12.02□□□□□ -0.49
CHMP3-206ENST00000466032 POTEMA6NI47 508 aa11.98□□□□□ -0.49
CHMP3-206ENST00000466032 C19orf67A6NJJ6 358 aa11.98□□□□□ -0.49
CHMP3-206ENST00000466032 PCDH10Q9P2E7 1040 aa11.97□□□□□ -0.49
CHMP3-206ENST00000466032 POLA2Q14181 598 aa11.94□□□□□ -0.5
CHMP3-206ENST00000466032 SLC4A2P04920 1241 aa11.93□□□□□ -0.5
CHMP3-206ENST00000466032 POTEIP0CG38 1075 aa11.9□□□□□ -0.5
CHMP3-206ENST00000466032 POTEGQ6S5H5 508 aa11.89□□□□□ -0.51
CHMP3-206ENST00000466032 SAMD1Q6SPF0 538 aaPredicted RBP11.88□□□□□ -0.51
CHMP3-206ENST00000466032 OTUD5Q96G74 571 aa11.71□□□□□ -0.53
CHMP3-206ENST00000466032 PRKAR2AP13861 404 aaKnown RBP11.7□□□□□ -0.54
CHMP3-206ENST00000466032 ZBTB12Q9Y330 459 aaPredicted RBP11.6□□□□□ -0.55
CHMP3-206ENST00000466032 OSCARQ8IYS5 282 aa11.58□□□□□ -0.56
CHMP3-206ENST00000466032 ZCCHC6Q5VYS8 1495 aaKnown RBP11.57□□□□□ -0.56
CHMP3-206ENST00000466032 DCAF1Q9Y4B6 1507 aa11.53□□□□□ -0.56
CHMP3-206ENST00000466032 CLCN6P51797 869 aa11.51□□□□□ -0.57
CHMP3-206ENST00000466032 ABCC9O60706 1549 aa11.5□□□□□ -0.57
CHMP3-206ENST00000466032 MYO15BQ96JP2 1530 aa11.5□□□□□ -0.57
CHMP3-206ENST00000466032 POTEB2H3BUK9 544 aa11.46□□□□□ -0.57
CHMP3-206ENST00000466032 LCE2DQ5TA82 110 aaPredicted RBP11.41□□□□□ -0.58
CHMP3-206ENST00000466032 NACADO15069 1562 aa11.4□□□□□ -0.58
CHMP3-206ENST00000466032 DCBLD2Q96PD2 775 aa11.39□□□□□ -0.59
CHMP3-206ENST00000466032 DCAF8L2P0C7V8 631 aa11.36□□□□□ -0.59
CHMP3-206ENST00000466032 RB1CC1Q8TDY2 1594 aa11.32□□□□□ -0.6
CHMP3-206ENST00000466032 SPDYE1Q8NFV5 336 aaPredicted RBP11.28□□□□□ -0.6
CHMP3-206ENST00000466032 CD44P16070 742 aaKnown RBP11.23□□□□□ -0.61
CHMP3-206ENST00000466032 CLEC11AQ9Y240 323 aa11.23□□□□□ -0.61
CHMP3-206ENST00000466032 CHADLQ6NUI6 762 aa11.22□□□□□ -0.61
CHMP3-206ENST00000466032 MYCNP04198 464 aaPredicted RBP11.16□□□□□ -0.62
CHMP3-206ENST00000466032 SPDYE2BA6NHP3 402 aa11.14□□□□□ -0.63
CHMP3-206ENST00000466032 SPDYE6P0CI01 402 aa11.14□□□□□ -0.63
CHMP3-206ENST00000466032 SPDYE2Q495Y8 402 aa11.14□□□□□ -0.63
CHMP3-206ENST00000466032 CDAN1Q8IWY9 1227 aa11.12□□□□□ -0.63
CHMP3-206ENST00000466032 FAM163AQ96GL9 167 aaPredicted RBP11.12□□□□□ -0.63
CHMP3-206ENST00000466032 ZNF579Q8NAF0 562 aaKnown RBP11.07□□□□□ -0.64
CHMP3-206ENST00000466032 POTEJP0CG39 1038 aa11.06□□□□□ -0.64
CHMP3-206ENST00000466032 MMRN1Q13201 1228 aa11.05□□□□□ -0.64
CHMP3-206ENST00000466032 ATF5Q9Y2D1 282 aaPredicted RBP11.03□□□□□ -0.64
CHMP3-206ENST00000466032 SCRIBQ14160 1630 aa11.02□□□□□ -0.65
CHMP3-206ENST00000466032 MAMSTRQ6ZN01 415 aa11□□□□□ -0.65
CHMP3-206ENST00000466032 GALR2O43603 387 aaPredicted RBP10.99□□□□□ -0.65
CHMP3-206ENST00000466032 SHROOM4Q9ULL8 1493 aa10.98□□□□□ -0.65
CHMP3-206ENST00000466032 FARP1Q9Y4F1 1045 aaPredicted RBP10.97□□□□□ -0.65
CHMP3-206ENST00000466032 PELP1Q8IZL8 1130 aaKnown RBP10.94□□□□□ -0.66
CHMP3-206ENST00000466032 SPNS2Q8IVW8 549 aa10.92□□□□□ -0.66
CHMP3-206ENST00000466032 UNC13AQ9UPW8 1703 aa10.91□□□□□ -0.66
CHMP3-206ENST00000466032 PRR29P0C7W0 189 aa10.89□□□□□ -0.67
CHMP3-206ENST00000466032 SSUH2Q9Y2M2 353 aa10.87□□□□□ -0.67
CHMP3-206ENST00000466032 BICRAQ9NZM4 1560 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms