RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 RUSC2Q8N2Y8 1516 aa24.94■■□□□ 1.58
SNRNP40-203ENST00000463988 CUL7Q14999 1698 aa24.94■■□□□ 1.58
SNRNP40-203ENST00000463988 KIAA0586Q9BVV6 1533 aa24.89■■□□□ 1.57
SNRNP40-203ENST00000463988 CARMIL1Q5VZK9 1371 aa24.84■■□□□ 1.57
SNRNP40-203ENST00000463988 NPM1P06748 294 aaKnown RBP eCLIP24.69■■□□□ 1.54
SNRNP40-203ENST00000463988 CARMIL2Q6F5E8 1435 aa24.64■■□□□ 1.54
SNRNP40-203ENST00000463988 ADCY10Q96PN6 1610 aa24.64■■□□□ 1.53
SNRNP40-203ENST00000463988 IQGAP2Q13576 1575 aa24.63■■□□□ 1.53
SNRNP40-203ENST00000463988 MAPKBP1O60336 1514 aa24.63■■□□□ 1.53
SNRNP40-203ENST00000463988 RAPGEF2Q9Y4G8 1499 aa24.63■■□□□ 1.53
SNRNP40-203ENST00000463988 PTPRGP23470 1445 aa24.62■■□□□ 1.53
SNRNP40-203ENST00000463988 KIF13AQ9H1H9 1805 aa24.61■■□□□ 1.53
SNRNP40-203ENST00000463988 TNIKQ9UKE5 1360 aa24.6■■□□□ 1.53
SNRNP40-203ENST00000463988 ABCC10Q5T3U5 1492 aa24.59■■□□□ 1.53
SNRNP40-203ENST00000463988 FAM69CQ0P6D2 419 aa24.55■■□□□ 1.52
SNRNP40-203ENST00000463988 DISP1Q96F81 1524 aa24.51■■□□□ 1.51
SNRNP40-203ENST00000463988 UGGT2Q9NYU1 1516 aa24.51■■□□□ 1.51
SNRNP40-203ENST00000463988 DIP2BQ9P265 1576 aa24.5■■□□□ 1.51
SNRNP40-203ENST00000463988 ABCC2Q92887 1545 aa24.47■■□□□ 1.51
SNRNP40-203ENST00000463988 UHRF1BP1LA0JNW5 1464 aa24.46■■□□□ 1.51
SNRNP40-203ENST00000463988 TTBK1Q5TCY1 1321 aaPredicted RBP24.46■■□□□ 1.51
SNRNP40-203ENST00000463988 UACAQ9BZF9 1416 aa24.44■■□□□ 1.5
SNRNP40-203ENST00000463988 PRXQ9BXM0 1461 aa24.42■■□□□ 1.5
SNRNP40-203ENST00000463988 KIAA0556O60303 1618 aa24.39■■□□□ 1.5
SNRNP40-203ENST00000463988 PLB1Q6P1J6 1458 aa24.38■■□□□ 1.49
SNRNP40-203ENST00000463988 CTTNBP2Q8WZ74 1663 aa24.37■■□□□ 1.49
SNRNP40-203ENST00000463988 ASXL2Q76L83 1435 aa24.35■■□□□ 1.49
SNRNP40-203ENST00000463988 GOLGA3Q08378 1498 aa24.34■■□□□ 1.49
SNRNP40-203ENST00000463988 KDM5BQ9UGL1 1544 aa24.34■■□□□ 1.49
SNRNP40-203ENST00000463988 AEBP2Q6ZN18 517 aaPredicted RBP24.32■■□□□ 1.48
SNRNP40-203ENST00000463988 GLI2P10070 1586 aa24.3■■□□□ 1.48
SNRNP40-203ENST00000463988 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
SNRNP40-203ENST00000463988 TSPOAP1O95153 1857 aa24.26■■□□□ 1.47
SNRNP40-203ENST00000463988 KDM6BO15054 1643 aa24.24■■□□□ 1.47
SNRNP40-203ENST00000463988 ZCCHC11Q5TAX3 1644 aaKnown RBP24.23■■□□□ 1.47
SNRNP40-203ENST00000463988 EEA1Q15075 1411 aa24.22■■□□□ 1.47
SNRNP40-203ENST00000463988 EPRSP07814 1512 aaKnown RBP24.21■■□□□ 1.47
SNRNP40-203ENST00000463988 ABCA8O94911 1581 aa24.19■■□□□ 1.46
SNRNP40-203ENST00000463988 PPRC1Q5VV67 1664 aaKnown RBP24.16■■□□□ 1.46
SNRNP40-203ENST00000463988 WDR7Q9Y4E6 1490 aa24.15■■□□□ 1.46
SNRNP40-203ENST00000463988 FAM9AQ8IZU1 332 aaPredicted RBP24.15■■□□□ 1.46
SNRNP40-203ENST00000463988 MAP3K4Q9Y6R4 1608 aa24.13■■□□□ 1.45
SNRNP40-203ENST00000463988 TEX14Q8IWB6 1497 aa24.1■■□□□ 1.45
SNRNP40-203ENST00000463988 SAMD9Q5K651 1589 aa24.07■■□□□ 1.44
SNRNP40-203ENST00000463988 P3H3Q8IVL6 736 aa24.05■■□□□ 1.44
SNRNP40-203ENST00000463988 COL17A1Q9UMD9 1497 aaPredicted RBP24.01■■□□□ 1.43
SNRNP40-203ENST00000463988 KCNH8Q96L42 1107 aa24■■□□□ 1.43
SNRNP40-203ENST00000463988 CD109Q6YHK3 1445 aa23.99■■□□□ 1.43
SNRNP40-203ENST00000463988 ATP10BO94823 1461 aa23.99■■□□□ 1.43
SNRNP40-203ENST00000463988 MAGI3Q5TCQ9 1506 aa23.99■■□□□ 1.43
SNRNP40-203ENST00000463988 CFAP43Q8NDM7 1665 aa23.99■■□□□ 1.43
SNRNP40-203ENST00000463988 KIF21BO75037 1637 aa23.96■■□□□ 1.43
SNRNP40-203ENST00000463988 KDM4FA0A1W2PPD8 638 aa23.96■■□□□ 1.43
SNRNP40-203ENST00000463988 RAPGEF6Q8TEU7 1601 aa23.93■■□□□ 1.42
SNRNP40-203ENST00000463988 ARID3CA6NKF2 412 aa23.91■■□□□ 1.42
SNRNP40-203ENST00000463988 CHIC1Q5VXU3 224 aa23.91■■□□□ 1.42
SNRNP40-203ENST00000463988 FHOD3Q2V2M9 1422 aa23.88■■□□□ 1.41
SNRNP40-203ENST00000463988 EFCAB5A4FU69 1503 aa23.88■■□□□ 1.41
SNRNP40-203ENST00000463988 RANGAP1P46060 587 aaPredicted RBP23.87■■□□□ 1.41
SNRNP40-203ENST00000463988 NUP153P49790 1475 aaKnown RBP23.87■■□□□ 1.41
SNRNP40-203ENST00000463988 ABCA9Q8IUA7 1624 aa23.84■■□□□ 1.41
SNRNP40-203ENST00000463988 PHLDB1Q86UU1 1377 aa23.82■■□□□ 1.4
SNRNP40-203ENST00000463988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.82■■□□□ 1.4
SNRNP40-203ENST00000463988 HNRNPUL2Q1KMD3 747 aaKnown RBP23.82■■□□□ 1.4
SNRNP40-203ENST00000463988 ARAP3Q8WWN8 1544 aa23.8■■□□□ 1.4
SNRNP40-203ENST00000463988 ADGRL1O94910 1474 aa23.79■■□□□ 1.4
SNRNP40-203ENST00000463988 UBTFP17480 764 aaKnown RBP23.77■■□□□ 1.4
SNRNP40-203ENST00000463988 PLEKHD1A6NEE1 506 aa23.76■■□□□ 1.39
SNRNP40-203ENST00000463988 NEO1Q92859 1461 aa23.73■■□□□ 1.39
SNRNP40-203ENST00000463988 FMN1Q68DA7 1419 aa23.67■■□□□ 1.38
SNRNP40-203ENST00000463988 EHMT2Q96KQ7 1210 aa23.67■■□□□ 1.38
SNRNP40-203ENST00000463988 ARHGAP35Q9NRY4 1499 aa23.66■■□□□ 1.38
SNRNP40-203ENST00000463988 RAPGEF3O95398 923 aa23.62■■□□□ 1.37
SNRNP40-203ENST00000463988 CDK13Q14004 1512 aaKnown RBP23.6■■□□□ 1.37
SNRNP40-203ENST00000463988 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.6■■□□□ 1.371e-7■■■■□ 24.6
SNRNP40-203ENST00000463988 HECW1Q76N89 1606 aa23.58■■□□□ 1.36
SNRNP40-203ENST00000463988 FANCAO15360 1455 aa23.56■■□□□ 1.36
SNRNP40-203ENST00000463988 AKNAQ7Z591 1439 aa23.56■■□□□ 1.36
SNRNP40-203ENST00000463988 CFAP74Q9C0B2 1584 aa23.56■■□□□ 1.36
SNRNP40-203ENST00000463988 CDK11AQ9UQ88 783 aaPredicted RBP23.55■■□□□ 1.36
SNRNP40-203ENST00000463988 FRMPD1Q5SYB0 1578 aa23.55■■□□□ 1.36
SNRNP40-203ENST00000463988 TTC37Q6PGP7 1564 aa23.55■■□□□ 1.36
SNRNP40-203ENST00000463988 ATP1B4Q9UN42 357 aaPredicted RBP23.54■■□□□ 1.36
SNRNP40-203ENST00000463988 DENND4BO75064 1496 aaPredicted RBP23.54■■□□□ 1.36
SNRNP40-203ENST00000463988 PLCH2O75038 1416 aa23.5■■□□□ 1.35
SNRNP40-203ENST00000463988 RICTORQ6R327 1708 aa23.47■■□□□ 1.35
SNRNP40-203ENST00000463988 TROQ12816 1431 aaPredicted RBP23.45■■□□□ 1.34
SNRNP40-203ENST00000463988 ZMYM4Q5VZL5 1548 aa23.43■■□□□ 1.34
SNRNP40-203ENST00000463988 ARHGEF40Q8TER5 1519 aa23.43■■□□□ 1.34
SNRNP40-203ENST00000463988 EFCAB2Q5VUJ9 269 aa23.43■■□□□ 1.34
SNRNP40-203ENST00000463988 ADAMTSL3P82987 1691 aa23.43■■□□□ 1.34
SNRNP40-203ENST00000463988 CASKIN1Q8WXD9 1431 aa23.42■■□□□ 1.34
SNRNP40-203ENST00000463988 MAGI2Q86UL8 1455 aa23.42■■□□□ 1.34
SNRNP40-203ENST00000463988 CLIP1P30622 1438 aa23.42■■□□□ 1.34
SNRNP40-203ENST00000463988 KIF14Q15058 1648 aa23.41■■□□□ 1.34
SNRNP40-203ENST00000463988 HECW2Q9P2P5 1572 aa23.4■■□□□ 1.34
SNRNP40-203ENST00000463988 SCAPERQ9BY12 1400 aa23.4■■□□□ 1.34
SNRNP40-203ENST00000463988 ARID4BQ4LE39 1312 aaPredicted RBP23.39■■□□□ 1.34
SNRNP40-203ENST00000463988 CCDC18Q5T9S5 1454 aa23.39■■□□□ 1.34
SNRNP40-203ENST00000463988 MYO5CQ9NQX4 1742 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms