RNA–Protein interactions for RNA: ENST00000463060.5

COL6A1-202, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 5

Gene COL6A1, Length 863 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-202ENST00000463060 NUP160Q12769 1436 aa23.33■■□□□ 1.33
COL6A1-202ENST00000463060 CEP170Q5SW79 1584 aa23.29■■□□□ 1.32
COL6A1-202ENST00000463060 KIAA0586Q9BVV6 1533 aa23.26■■□□□ 1.31
COL6A1-202ENST00000463060 CTTNBP2Q8WZ74 1663 aa23.23■■□□□ 1.31
COL6A1-202ENST00000463060 OSCARQ8IYS5 282 aa23.17■■□□□ 1.3
COL6A1-202ENST00000463060 CLASP1Q7Z460 1538 aa23.17■■□□□ 1.3
COL6A1-202ENST00000463060 IQGAP2Q13576 1575 aa23.16■■□□□ 1.3
COL6A1-202ENST00000463060 CEP162Q5TB80 1403 aa23.12■■□□□ 1.29
COL6A1-202ENST00000463060 JPH4Q96JJ6 628 aa23.11■■□□□ 1.29
COL6A1-202ENST00000463060 UGGT2Q9NYU1 1516 aa23.11■■□□□ 1.29
COL6A1-202ENST00000463060 SHROOM2Q13796 1616 aa23.07■■□□□ 1.28
COL6A1-202ENST00000463060 CLIP1P30622 1438 aa23.07■■□□□ 1.28
COL6A1-202ENST00000463060 ARHGAP35Q9NRY4 1499 aa23.04■■□□□ 1.28
COL6A1-202ENST00000463060 SAMD9Q5K651 1589 aa23.03■■□□□ 1.28
COL6A1-202ENST00000463060 RANGAP1P46060 587 aaPredicted RBP23.02■■□□□ 1.28
COL6A1-202ENST00000463060 DISP1Q96F81 1524 aa23.02■■□□□ 1.28
COL6A1-202ENST00000463060 EFCAB5A4FU69 1503 aa23.01■■□□□ 1.27
COL6A1-202ENST00000463060 PRG4Q92954 1404 aaPredicted RBP22.98■■□□□ 1.27
COL6A1-202ENST00000463060 ARAP1Q96P48 1450 aa22.95■■□□□ 1.26
COL6A1-202ENST00000463060 KIAA0556O60303 1618 aa22.94■■□□□ 1.26
COL6A1-202ENST00000463060 CARMIL2Q6F5E8 1435 aa22.93■■□□□ 1.26
COL6A1-202ENST00000463060 P3H3Q8IVL6 736 aa22.92■■□□□ 1.26
COL6A1-202ENST00000463060 ERCC6L2Q5T890 1561 aa22.91■■□□□ 1.26
COL6A1-202ENST00000463060 FHOD3Q2V2M9 1422 aa22.9■■□□□ 1.26
COL6A1-202ENST00000463060 VPS8Q8N3P4 1428 aa22.81■■□□□ 1.24
COL6A1-202ENST00000463060 FMN1Q68DA7 1419 aa22.8■■□□□ 1.24
COL6A1-202ENST00000463060 PTPRGP23470 1445 aa22.78■■□□□ 1.24
COL6A1-202ENST00000463060 ARHGEF11O15085 1522 aa22.77■■□□□ 1.24
COL6A1-202ENST00000463060 CASKIN1Q8WXD9 1431 aa22.72■■□□□ 1.23
COL6A1-202ENST00000463060 RIMBP3CA6NJZ7 1639 aa22.7■■□□□ 1.22
COL6A1-202ENST00000463060 RIMBP3BA6NNM3 1639 aa22.7■■□□□ 1.22
COL6A1-202ENST00000463060 RIMBP3Q9UFD9 1639 aa22.7■■□□□ 1.22
COL6A1-202ENST00000463060 ABCA8O94911 1581 aa22.69■■□□□ 1.22
COL6A1-202ENST00000463060 PLB1Q6P1J6 1458 aa22.68■■□□□ 1.22
COL6A1-202ENST00000463060 TTBK1Q5TCY1 1321 aaPredicted RBP22.68■■□□□ 1.22
COL6A1-202ENST00000463060 PCF11O94913 1555 aaKnown RBP22.67■■□□□ 1.22
COL6A1-202ENST00000463060 FYCO1Q9BQS8 1478 aa22.66■■□□□ 1.22
COL6A1-202ENST00000463060 UACAQ9BZF9 1416 aa22.65■■□□□ 1.22
COL6A1-202ENST00000463060 RAPGEF6Q8TEU7 1601 aa22.64■■□□□ 1.22
COL6A1-202ENST00000463060 UHRF1BP1LA0JNW5 1464 aa22.62■■□□□ 1.21
COL6A1-202ENST00000463060 NUP153P49790 1475 aaKnown RBP22.61■■□□□ 1.21
COL6A1-202ENST00000463060 ABCC2Q92887 1545 aa22.58■■□□□ 1.21
COL6A1-202ENST00000463060 HECW1Q76N89 1606 aa22.58■■□□□ 1.21
COL6A1-202ENST00000463060 LRRIQ1Q96JM4 1722 aa22.57■■□□□ 1.2
COL6A1-202ENST00000463060 MAP3K1Q13233 1512 aa22.57■■□□□ 1.2
COL6A1-202ENST00000463060 EPRSP07814 1512 aaKnown RBP22.56■■□□□ 1.2
COL6A1-202ENST00000463060 ADCY10Q96PN6 1610 aa22.54■■□□□ 1.2
COL6A1-202ENST00000463060 ATP1B4Q9UN42 357 aaPredicted RBP22.54■■□□□ 1.2
COL6A1-202ENST00000463060 ATP10BO94823 1461 aa22.54■■□□□ 1.2
COL6A1-202ENST00000463060 CYB5RLQ6IPT4 315 aa22.53■■□□□ 1.2
COL6A1-202ENST00000463060 CCDC18Q5T9S5 1454 aa22.51■■□□□ 1.19
COL6A1-202ENST00000463060 KDM5BQ9UGL1 1544 aa22.51■■□□□ 1.19
COL6A1-202ENST00000463060 TIAM1Q13009 1591 aa22.5■■□□□ 1.19
COL6A1-202ENST00000463060 CDK13Q14004 1512 aaKnown RBP22.48■■□□□ 1.19
COL6A1-202ENST00000463060 CFAP43Q8NDM7 1665 aa22.47■■□□□ 1.19
COL6A1-202ENST00000463060 ARID3CA6NKF2 412 aa22.45■■□□□ 1.18
COL6A1-202ENST00000463060 APLP2Q06481 763 aa22.45■■□□□ 1.18
COL6A1-202ENST00000463060 KANK4Q5T7N3 995 aaPredicted RBP22.45■■□□□ 1.18
COL6A1-202ENST00000463060 ZCCHC11Q5TAX3 1644 aaKnown RBP22.42■■□□□ 1.18
COL6A1-202ENST00000463060 MAGI3Q5TCQ9 1506 aa22.41■■□□□ 1.18
COL6A1-202ENST00000463060 LRRC9Q6ZRR7 1453 aa22.41■■□□□ 1.18
COL6A1-202ENST00000463060 CDK11AQ9UQ88 783 aaPredicted RBP22.37■■□□□ 1.17
COL6A1-202ENST00000463060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.36■■□□□ 1.17
COL6A1-202ENST00000463060 HNRNPUL2Q1KMD3 747 aaKnown RBP22.36■■□□□ 1.17
COL6A1-202ENST00000463060 PLEKHD1A6NEE1 506 aa22.35■■□□□ 1.17
COL6A1-202ENST00000463060 NPM1P06748 294 aaKnown RBP eCLIP22.34■■□□□ 1.17
COL6A1-202ENST00000463060 PPARGC1BQ86YN6 1023 aaKnown RBP22.34■■□□□ 1.17
COL6A1-202ENST00000463060 MTUS2Q5JR59 1369 aa22.34■■□□□ 1.17
COL6A1-202ENST00000463060 TROQ12816 1431 aaPredicted RBP22.33■■□□□ 1.17
COL6A1-202ENST00000463060 EHBP1L1Q8N3D4 1523 aa22.31■■□□□ 1.16
COL6A1-202ENST00000463060 ASXL2Q76L83 1435 aa22.29■■□□□ 1.16
COL6A1-202ENST00000463060 MAPKBP1O60336 1514 aa22.28■■□□□ 1.16
COL6A1-202ENST00000463060 WDR7Q9Y4E6 1490 aa22.26■■□□□ 1.15
COL6A1-202ENST00000463060 NCOA2Q15596 1464 aa22.22■■□□□ 1.15
COL6A1-202ENST00000463060 SUPT6HQ7KZ85 1726 aaKnown RBP22.22■■□□□ 1.15
COL6A1-202ENST00000463060 KIF14Q15058 1648 aa22.21■■□□□ 1.15
COL6A1-202ENST00000463060 ABCC10Q5T3U5 1492 aa22.21■■□□□ 1.15
COL6A1-202ENST00000463060 PHLDB1Q86UU1 1377 aa22.18■■□□□ 1.14
COL6A1-202ENST00000463060 KCNH8Q96L42 1107 aa22.18■■□□□ 1.14
COL6A1-202ENST00000463060 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.16■■□□□ 1.14
COL6A1-202ENST00000463060 GPATCH8Q9UKJ3 1502 aaKnown RBP22.12■■□□□ 1.13
COL6A1-202ENST00000463060 ABCA9Q8IUA7 1624 aa22.11■■□□□ 1.13
COL6A1-202ENST00000463060 MYOM3Q5VTT5 1437 aa22.11■■□□□ 1.13
COL6A1-202ENST00000463060 TTC37Q6PGP7 1564 aa22.11■■□□□ 1.13
COL6A1-202ENST00000463060 CCNB3Q8WWL7 1395 aa22.1■■□□□ 1.13
COL6A1-202ENST00000463060 GLI2P10070 1586 aa22.09■■□□□ 1.13
COL6A1-202ENST00000463060 TRHP20396 242 aaPredicted RBP22.07■■□□□ 1.12
COL6A1-202ENST00000463060 RRBP1Q9P2E9 1410 aaKnown RBP22.06■■□□□ 1.12
COL6A1-202ENST00000463060 CDC42BPAQ5VT25 1732 aa22.06■■□□□ 1.12
COL6A1-202ENST00000463060 DIP2BQ9P265 1576 aa22.06■■□□□ 1.12
COL6A1-202ENST00000463060 PLCH2O75038 1416 aa22.06■■□□□ 1.12
COL6A1-202ENST00000463060 FGD6Q6ZV73 1430 aa22.06■■□□□ 1.12
COL6A1-202ENST00000463060 MIA2Q96PC5 1412 aa22.06■■□□□ 1.12
COL6A1-202ENST00000463060 CDC42BPBQ9Y5S2 1711 aa22.02■■□□□ 1.12
COL6A1-202ENST00000463060 PREX2Q70Z35 1606 aa22.02■■□□□ 1.11
COL6A1-202ENST00000463060 ITSN2Q9NZM3 1697 aa22.01■■□□□ 1.11
COL6A1-202ENST00000463060 ARAP3Q8WWN8 1544 aa22.01■■□□□ 1.11
COL6A1-202ENST00000463060 MYO5CQ9NQX4 1742 aa22.01■■□□□ 1.11
COL6A1-202ENST00000463060 FAM69CQ0P6D2 419 aa22.01■■□□□ 1.11
COL6A1-202ENST00000463060 CD109Q6YHK3 1445 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms