RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 RRBP1Q9P2E9 1410 aaKnown RBP18.41■□□□□ 0.54
HDAC4-208ENST00000463007 KIF21AQ7Z4S6 1674 aa18.4■□□□□ 0.54
HDAC4-208ENST00000463007 APLP2Q06481 763 aa18.39■□□□□ 0.53
HDAC4-208ENST00000463007 CTTNBP2Q8WZ74 1663 aa18.39■□□□□ 0.53
HDAC4-208ENST00000463007 TIAM1Q13009 1591 aa18.37■□□□□ 0.53
HDAC4-208ENST00000463007 KANK4Q5T7N3 995 aaPredicted RBP18.37■□□□□ 0.53
HDAC4-208ENST00000463007 CFAP43Q8NDM7 1665 aa18.37■□□□□ 0.53
HDAC4-208ENST00000463007 TARBP1Q13395 1621 aaKnown RBP18.33■□□□□ 0.52
HDAC4-208ENST00000463007 EFCAB5A4FU69 1503 aa18.32■□□□□ 0.52
HDAC4-208ENST00000463007 DNAJC5BQ9UF47 199 aa18.32■□□□□ 0.52
HDAC4-208ENST00000463007 PCF11O94913 1555 aaKnown RBP18.31■□□□□ 0.52
HDAC4-208ENST00000463007 PDS5BQ9NTI5 1447 aa18.3■□□□□ 0.52
HDAC4-208ENST00000463007 ITGAEP38570 1179 aa18.26■□□□□ 0.51
HDAC4-208ENST00000463007 SAMD9Q5K651 1589 aa18.26■□□□□ 0.51
HDAC4-208ENST00000463007 AQRO60306 1485 aaKnown RBP eCLIP18.25■□□□□ 0.516e-9■■■■■ 37.6
HDAC4-208ENST00000463007 LRRC9Q6ZRR7 1453 aa18.25■□□□□ 0.51
HDAC4-208ENST00000463007 FHAD1B1AJZ9 1412 aa18.23■□□□□ 0.51
HDAC4-208ENST00000463007 MYT1Q01538 1121 aa18.23■□□□□ 0.51
HDAC4-208ENST00000463007 FYCO1Q9BQS8 1478 aa18.22■□□□□ 0.51
HDAC4-208ENST00000463007 GAPVD1Q14C86 1478 aa18.21■□□□□ 0.51
HDAC4-208ENST00000463007 CCNB3Q8WWL7 1395 aa18.2■□□□□ 0.5
HDAC4-208ENST00000463007 PBRM1Q86U86 1689 aa18.19■□□□□ 0.5
HDAC4-208ENST00000463007 SNAPC4Q5SXM2 1469 aa18.19■□□□□ 0.5
HDAC4-208ENST00000463007 LRRIQ1Q96JM4 1722 aa18.18■□□□□ 0.5
HDAC4-208ENST00000463007 DHX57Q6P158 1386 aaKnown RBP18.18■□□□□ 0.5
HDAC4-208ENST00000463007 CASKIN1Q8WXD9 1431 aa18.18■□□□□ 0.5
HDAC4-208ENST00000463007 FHOD3Q2V2M9 1422 aa18.16■□□□□ 0.5
HDAC4-208ENST00000463007 CLSPNQ9HAW4 1339 aa18.15■□□□□ 0.5
HDAC4-208ENST00000463007 TDRD9Q8NDG6 1382 aaKnown RBP18.15■□□□□ 0.5
HDAC4-208ENST00000463007 BCANQ96GW7 911 aa18.14■□□□□ 0.49
HDAC4-208ENST00000463007 PHLDB1Q86UU1 1377 aa18.12■□□□□ 0.49
HDAC4-208ENST00000463007 MRC2Q9UBG0 1479 aa18.11■□□□□ 0.49
HDAC4-208ENST00000463007 ADAMTS12P58397 1594 aa18.11■□□□□ 0.49
HDAC4-208ENST00000463007 THOC2Q8NI27 1593 aaKnown RBP18.1■□□□□ 0.49
HDAC4-208ENST00000463007 WDR62O43379 1518 aa18.09■□□□□ 0.49
HDAC4-208ENST00000463007 FMN1Q68DA7 1419 aa18.07■□□□□ 0.48
HDAC4-208ENST00000463007 GRIN2BQ13224 1484 aa18.07■□□□□ 0.48
HDAC4-208ENST00000463007 KCNH8Q96L42 1107 aa18.05■□□□□ 0.48
HDAC4-208ENST00000463007 SUPT16HQ9Y5B9 1047 aaKnown RBP18.04■□□□□ 0.48
HDAC4-208ENST00000463007 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.04■□□□□ 0.487e-7■■■■■ 52.8
HDAC4-208ENST00000463007 MAPKBP1O60336 1514 aa18.03■□□□□ 0.48
HDAC4-208ENST00000463007 P3H3Q8IVL6 736 aa17.99■□□□□ 0.47
HDAC4-208ENST00000463007 ARHGEF11O15085 1522 aa17.99■□□□□ 0.47
HDAC4-208ENST00000463007 IQGAP2Q13576 1575 aa17.98■□□□□ 0.47
HDAC4-208ENST00000463007 IFT140Q96RY7 1462 aa17.97■□□□□ 0.47
HDAC4-208ENST00000463007 RAB3GAP2Q9H2M9 1393 aa17.97■□□□□ 0.47
HDAC4-208ENST00000463007 HIRIP3Q9BW71 556 aaPredicted RBP17.95■□□□□ 0.46
HDAC4-208ENST00000463007 MAGI3Q5TCQ9 1506 aa17.94■□□□□ 0.46
HDAC4-208ENST00000463007 UGGT2Q9NYU1 1516 aa17.94■□□□□ 0.46
HDAC4-208ENST00000463007 ZNF608Q9ULD9 1512 aaPredicted RBP17.94■□□□□ 0.46
HDAC4-208ENST00000463007 SETD5Q9C0A6 1442 aa17.93■□□□□ 0.46
HDAC4-208ENST00000463007 EHBP1L1Q8N3D4 1523 aa17.93■□□□□ 0.46
HDAC4-208ENST00000463007 FGD6Q6ZV73 1430 aa17.92■□□□□ 0.46
HDAC4-208ENST00000463007 EIF4G3O43432 1585 aaKnown RBP17.92■□□□□ 0.46
HDAC4-208ENST00000463007 ATP1B4Q9UN42 357 aaPredicted RBP17.91■□□□□ 0.46
HDAC4-208ENST00000463007 SUPT6HQ7KZ85 1726 aaKnown RBP17.91■□□□□ 0.46
HDAC4-208ENST00000463007 HECW1Q76N89 1606 aa17.89■□□□□ 0.46
HDAC4-208ENST00000463007 CCDC18Q5T9S5 1454 aa17.88■□□□□ 0.45
HDAC4-208ENST00000463007 NCOA2Q15596 1464 aa17.88■□□□□ 0.45
HDAC4-208ENST00000463007 DDX10Q13206 875 aaKnown RBP17.86■□□□□ 0.45
HDAC4-208ENST00000463007 TSHZ2Q9NRE2 1034 aa17.85■□□□□ 0.45
HDAC4-208ENST00000463007 MYOM3Q5VTT5 1437 aa17.84■□□□□ 0.45
HDAC4-208ENST00000463007 KIAA0556O60303 1618 aa17.84■□□□□ 0.45
HDAC4-208ENST00000463007 PTPRKQ15262 1439 aa17.84■□□□□ 0.45
HDAC4-208ENST00000463007 DISP1Q96F81 1524 aa17.83■□□□□ 0.45
HDAC4-208ENST00000463007 FKBP8Q14318 412 aa17.83■□□□□ 0.44
HDAC4-208ENST00000463007 TCOF1Q13428 1488 aaKnown RBP17.82■□□□□ 0.44
HDAC4-208ENST00000463007 EPRSP07814 1512 aaKnown RBP17.82■□□□□ 0.44
HDAC4-208ENST00000463007 KIAA0586Q9BVV6 1533 aa17.81■□□□□ 0.44
HDAC4-208ENST00000463007 PTPN23Q9H3S7 1636 aa17.81■□□□□ 0.44
HDAC4-208ENST00000463007 MTUS2Q5JR59 1369 aa17.81■□□□□ 0.44
HDAC4-208ENST00000463007 GRIN2AQ12879 1464 aa17.8■□□□□ 0.44
HDAC4-208ENST00000463007 TRIM52Q96A61 297 aa17.8■□□□□ 0.44
HDAC4-208ENST00000463007 HFM1A2PYH4 1435 aa17.8■□□□□ 0.44
HDAC4-208ENST00000463007 SIN3AQ96ST3 1273 aa17.78■□□□□ 0.44
HDAC4-208ENST00000463007 MAGI1Q96QZ7 1491 aaPredicted RBP17.77■□□□□ 0.44
HDAC4-208ENST00000463007 FAM50AQ14320 339 aaKnown RBP17.77■□□□□ 0.43
HDAC4-208ENST00000463007 GCC2Q8IWJ2 1684 aa17.76■□□□□ 0.43
HDAC4-208ENST00000463007 CEP170Q5SW79 1584 aa17.76■□□□□ 0.43
HDAC4-208ENST00000463007 CDK13Q14004 1512 aaKnown RBP17.75■□□□□ 0.43
HDAC4-208ENST00000463007 NAIPQ13075 1403 aa17.73■□□□□ 0.43
HDAC4-208ENST00000463007 RAPGEF6Q8TEU7 1601 aa17.71■□□□□ 0.43
HDAC4-208ENST00000463007 NUP153P49790 1475 aaKnown RBP17.71■□□□□ 0.43
HDAC4-208ENST00000463007 SYNJ2O15056 1496 aa17.7■□□□□ 0.42
HDAC4-208ENST00000463007 AKNAQ7Z591 1439 aa17.7■□□□□ 0.42
HDAC4-208ENST00000463007 MIA2Q96PC5 1412 aa17.68■□□□□ 0.42
HDAC4-208ENST00000463007 UACAQ9BZF9 1416 aa17.68■□□□□ 0.42
HDAC4-208ENST00000463007 ERCC6Q03468 1493 aa17.68■□□□□ 0.42
HDAC4-208ENST00000463007 NUP160Q12769 1436 aa17.67■□□□□ 0.42
HDAC4-208ENST00000463007 ANP32EQ9BTT0 268 aa17.67■□□□□ 0.42
HDAC4-208ENST00000463007 NEFLP07196 543 aa17.65■□□□□ 0.42
HDAC4-208ENST00000463007 DENND4BO75064 1496 aaPredicted RBP17.65■□□□□ 0.42
HDAC4-208ENST00000463007 KDM5BQ9UGL1 1544 aa17.65■□□□□ 0.42
HDAC4-208ENST00000463007 IRX6P78412 446 aaPredicted RBP17.64■□□□□ 0.41
HDAC4-208ENST00000463007 TIMELESSQ9UNS1 1208 aa17.64■□□□□ 0.41
HDAC4-208ENST00000463007 ADCY10Q96PN6 1610 aa17.64■□□□□ 0.41
HDAC4-208ENST00000463007 KDM6BO15054 1643 aa17.63■□□□□ 0.41
HDAC4-208ENST00000463007 DNMT1P26358 1616 aaKnown RBP17.61■□□□□ 0.41
HDAC4-208ENST00000463007 ABCA8O94911 1581 aa17.54■□□□□ 0.4
HDAC4-208ENST00000463007 CNGB1Q14028 1251 aaPredicted RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms