RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CSRNP3Q8WYN3 585 aa38.09■■■■□ 3.69
CCDC28B-203ENST00000461819 PRXQ9BXM0 1461 aa38.09■■■■□ 3.69
CCDC28B-203ENST00000461819 KIAA0586Q9BVV6 1533 aa38.08■■■■□ 3.69
CCDC28B-203ENST00000461819 FAM9AQ8IZU1 332 aaPredicted RBP38.07■■■■□ 3.68
CCDC28B-203ENST00000461819 ARAP1Q96P48 1450 aa38■■■■□ 3.67
CCDC28B-203ENST00000461819 CTTNBP2Q8WZ74 1663 aa37.98■■■■□ 3.67
CCDC28B-203ENST00000461819 IQGAP2Q13576 1575 aa37.97■■■■□ 3.67
CCDC28B-203ENST00000461819 ERCC6L2Q5T890 1561 aa37.97■■■■□ 3.67
CCDC28B-203ENST00000461819 JPH4Q96JJ6 628 aa37.96■■■■□ 3.67
CCDC28B-203ENST00000461819 PRG4Q92954 1404 aaPredicted RBP37.94■■■■□ 3.66
CCDC28B-203ENST00000461819 CYB5RLQ6IPT4 315 aa37.89■■■■□ 3.66
CCDC28B-203ENST00000461819 KIF21BO75037 1637 aa37.87■■■■□ 3.65
CCDC28B-203ENST00000461819 UGGT2Q9NYU1 1516 aa37.71■■■■□ 3.63
CCDC28B-203ENST00000461819 CARMIL2Q6F5E8 1435 aa37.7■■■■□ 3.63
CCDC28B-203ENST00000461819 GOLGA3Q08378 1498 aa37.63■■■■□ 3.61
CCDC28B-203ENST00000461819 DISP1Q96F81 1524 aa37.62■■■■□ 3.61
CCDC28B-203ENST00000461819 KIAA0556O60303 1618 aa37.61■■■■□ 3.61
CCDC28B-203ENST00000461819 EHMT2Q96KQ7 1210 aa37.59■■■■□ 3.61
CCDC28B-203ENST00000461819 TNIKQ9UKE5 1360 aa37.54■■■■□ 3.6
CCDC28B-203ENST00000461819 UBTFP17480 764 aaKnown RBP37.49■■■■□ 3.59
CCDC28B-203ENST00000461819 TTBK1Q5TCY1 1321 aaPredicted RBP37.49■■■■□ 3.59
CCDC28B-203ENST00000461819 PTPRGP23470 1445 aa37.49■■■■□ 3.59
CCDC28B-203ENST00000461819 SAMD9Q5K651 1589 aa37.41■■■■□ 3.58
CCDC28B-203ENST00000461819 ADCY10Q96PN6 1610 aa37.39■■■■□ 3.58
CCDC28B-203ENST00000461819 RANGAP1P46060 587 aaPredicted RBP37.38■■■■□ 3.57
CCDC28B-203ENST00000461819 EFCAB5A4FU69 1503 aa37.3■■■■□ 3.56
CCDC28B-203ENST00000461819 P3H3Q8IVL6 736 aa37.29■■■■□ 3.56
CCDC28B-203ENST00000461819 UACAQ9BZF9 1416 aa37.25■■■■□ 3.55
CCDC28B-203ENST00000461819 ABCC2Q92887 1545 aa37.22■■■■□ 3.55
CCDC28B-203ENST00000461819 NPM1P06748 294 aaKnown RBP eCLIP37.21■■■■□ 3.55
CCDC28B-203ENST00000461819 UHRF1BP1LA0JNW5 1464 aa37.2■■■■□ 3.55
CCDC28B-203ENST00000461819 FHOD3Q2V2M9 1422 aa37.17■■■■□ 3.54
CCDC28B-203ENST00000461819 PLB1Q6P1J6 1458 aa37.16■■■■□ 3.54
CCDC28B-203ENST00000461819 ABCA8O94911 1581 aa37.14■■■■□ 3.54
CCDC28B-203ENST00000461819 TRHP20396 242 aaPredicted RBP37.1■■■■□ 3.53
CCDC28B-203ENST00000461819 MAPKBP1O60336 1514 aa37.08■■■■□ 3.53
CCDC28B-203ENST00000461819 ARHGAP35Q9NRY4 1499 aa37.07■■■■□ 3.53
CCDC28B-203ENST00000461819 ZCCHC11Q5TAX3 1644 aaKnown RBP37.05■■■■□ 3.52
CCDC28B-203ENST00000461819 RAPGEF6Q8TEU7 1601 aa37.04■■■■□ 3.52
CCDC28B-203ENST00000461819 KDM5BQ9UGL1 1544 aa37.03■■■■□ 3.52
CCDC28B-203ENST00000461819 CLIP1P30622 1438 aa36.93■■■■□ 3.5
CCDC28B-203ENST00000461819 KIF13AQ9H1H9 1805 aa36.93■■■■□ 3.5
CCDC28B-203ENST00000461819 LOC105371045A0A1W2PR82 267 aa36.91■■■■□ 3.5
CCDC28B-203ENST00000461819 FMN1Q68DA7 1419 aa36.91■■■■□ 3.5
CCDC28B-203ENST00000461819 ASXL2Q76L83 1435 aa36.9■■■■□ 3.5
CCDC28B-203ENST00000461819 DIP2BQ9P265 1576 aa36.87■■■■□ 3.49
CCDC28B-203ENST00000461819 ABCC10Q5T3U5 1492 aa36.85■■■■□ 3.49
CCDC28B-203ENST00000461819 ARID3CA6NKF2 412 aa36.84■■■■□ 3.49
CCDC28B-203ENST00000461819 NUP153P49790 1475 aaKnown RBP36.83■■■■□ 3.49
CCDC28B-203ENST00000461819 CEP162Q5TB80 1403 aa36.83■■■■□ 3.49
CCDC28B-203ENST00000461819 HECW1Q76N89 1606 aa36.79■■■■□ 3.48
CCDC28B-203ENST00000461819 ATP10BO94823 1461 aa36.79■■■■□ 3.48
CCDC28B-203ENST00000461819 WDR7Q9Y4E6 1490 aa36.76■■■■□ 3.48
CCDC28B-203ENST00000461819 FAM69CQ0P6D2 419 aa36.76■■■■□ 3.48
CCDC28B-203ENST00000461819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.72■■■■□ 3.47
CCDC28B-203ENST00000461819 HNRNPUL2Q1KMD3 747 aaKnown RBP36.72■■■■□ 3.47
CCDC28B-203ENST00000461819 PCF11O94913 1555 aaKnown RBP36.7■■■■□ 3.47
CCDC28B-203ENST00000461819 ATP1B4Q9UN42 357 aaPredicted RBP36.7■■■■□ 3.47
CCDC28B-203ENST00000461819 EPRSP07814 1512 aaKnown RBP36.68■■■■□ 3.46
CCDC28B-203ENST00000461819 GLI2P10070 1586 aa36.66■■■■□ 3.46
CCDC28B-203ENST00000461819 TSPOAP1O95153 1857 aa36.65■■■■□ 3.46
CCDC28B-203ENST00000461819 CDK13Q14004 1512 aaKnown RBP36.64■■■■□ 3.46
CCDC28B-203ENST00000461819 CASKIN1Q8WXD9 1431 aa36.62■■■■□ 3.45
CCDC28B-203ENST00000461819 LRRIQ1Q96JM4 1722 aa36.62■■■■□ 3.45
CCDC28B-203ENST00000461819 FYCO1Q9BQS8 1478 aa36.59■■■■□ 3.45
CCDC28B-203ENST00000461819 KCNH8Q96L42 1107 aa36.57■■■■□ 3.44
CCDC28B-203ENST00000461819 MAP3K4Q9Y6R4 1608 aa36.56■■■■□ 3.44
CCDC28B-203ENST00000461819 CFAP43Q8NDM7 1665 aa36.51■■■■□ 3.44
CCDC28B-203ENST00000461819 CCDC18Q5T9S5 1454 aa36.5■■■■□ 3.43
CCDC28B-203ENST00000461819 PLEKHD1A6NEE1 506 aa36.5■■■■□ 3.43
CCDC28B-203ENST00000461819 PPRC1Q5VV67 1664 aaKnown RBP36.46■■■■□ 3.43
CCDC28B-203ENST00000461819 ABCA9Q8IUA7 1624 aa36.43■■■■□ 3.42
CCDC28B-203ENST00000461819 CDK11AQ9UQ88 783 aaPredicted RBP36.42■■■■□ 3.42
CCDC28B-203ENST00000461819 CD109Q6YHK3 1445 aa36.37■■■■□ 3.41
CCDC28B-203ENST00000461819 VPS8Q8N3P4 1428 aa36.36■■■■□ 3.41
CCDC28B-203ENST00000461819 TEX14Q8IWB6 1497 aa36.35■■■■□ 3.41
CCDC28B-203ENST00000461819 KIF14Q15058 1648 aa36.31■■■■□ 3.4
CCDC28B-203ENST00000461819 TROQ12816 1431 aaPredicted RBP36.31■■■■□ 3.4
CCDC28B-203ENST00000461819 MAGI3Q5TCQ9 1506 aa36.29■■■■□ 3.4
CCDC28B-203ENST00000461819 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.29■■■■□ 3.41e-6■■■■■ 42.9
CCDC28B-203ENST00000461819 TTC37Q6PGP7 1564 aa36.28■■■■□ 3.4
CCDC28B-203ENST00000461819 KDM6BO15054 1643 aa36.26■■■■□ 3.39
CCDC28B-203ENST00000461819 MYO5CQ9NQX4 1742 aa36.18■■■■□ 3.38
CCDC28B-203ENST00000461819 TIAM1Q13009 1591 aa36.14■■■■□ 3.38
CCDC28B-203ENST00000461819 MTUS2Q5JR59 1369 aa36.14■■■■□ 3.38
CCDC28B-203ENST00000461819 CFAP74Q9C0B2 1584 aa36.11■■■■□ 3.37
CCDC28B-203ENST00000461819 EHBP1L1Q8N3D4 1523 aa36.11■■■■□ 3.37
CCDC28B-203ENST00000461819 NEO1Q92859 1461 aa36.06■■■■□ 3.36
CCDC28B-203ENST00000461819 FANCAO15360 1455 aa36.05■■■■□ 3.36
CCDC28B-203ENST00000461819 PLCH2O75038 1416 aa36.03■■■■□ 3.36
CCDC28B-203ENST00000461819 MAP3K1Q13233 1512 aa36.01■■■■□ 3.36
CCDC28B-203ENST00000461819 ARAP3Q8WWN8 1544 aa36.01■■■■□ 3.36
CCDC28B-203ENST00000461819 PREX2Q70Z35 1606 aa36.01■■■■□ 3.35
CCDC28B-203ENST00000461819 PHLDB1Q86UU1 1377 aa36.01■■■■□ 3.35
CCDC28B-203ENST00000461819 CDC42BPAQ5VT25 1732 aa36■■■■□ 3.35
CCDC28B-203ENST00000461819 COL17A1Q9UMD9 1497 aaPredicted RBP36■■■■□ 3.35
CCDC28B-203ENST00000461819 CDC42BPBQ9Y5S2 1711 aa35.99■■■■□ 3.35
CCDC28B-203ENST00000461819 ARHGAP5Q13017 1502 aa35.98■■■■□ 3.35
CCDC28B-203ENST00000461819 SUPT6HQ7KZ85 1726 aaKnown RBP35.97■■■■□ 3.35
CCDC28B-203ENST00000461819 APLP2Q06481 763 aa35.96■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms