RNA–Protein interactions for RNA: ENST00000461798.5

BRCA1-207, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-207ENST00000461798 PBRM1Q86U86 1689 aa16.1■□□□□ 0.17
BRCA1-207ENST00000461798 FHAD1B1AJZ9 1412 aa16.06■□□□□ 0.16
BRCA1-207ENST00000461798 GRIN2AQ12879 1464 aa16.05■□□□□ 0.16
BRCA1-207ENST00000461798 ERICH3Q5RHP9 1530 aa16.04■□□□□ 0.16
BRCA1-207ENST00000461798 NUP160Q12769 1436 aa16.03■□□□□ 0.16
BRCA1-207ENST00000461798 ADAMTS12P58397 1594 aa16.01■□□□□ 0.15
BRCA1-207ENST00000461798 CEP170Q5SW79 1584 aa15.95■□□□□ 0.14
BRCA1-207ENST00000461798 IGF1RP08069 1367 aa15.93■□□□□ 0.14
BRCA1-207ENST00000461798 KIF27Q86VH2 1401 aa15.92■□□□□ 0.14
BRCA1-207ENST00000461798 TRHP20396 242 aaPredicted RBP15.91■□□□□ 0.14
BRCA1-207ENST00000461798 JPH4Q96JJ6 628 aa15.9■□□□□ 0.14
BRCA1-207ENST00000461798 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
BRCA1-207ENST00000461798 SHROOM2Q13796 1616 aa15.89■□□□□ 0.13
BRCA1-207ENST00000461798 ERCC6L2Q5T890 1561 aa15.87■□□□□ 0.13
BRCA1-207ENST00000461798 PRG4Q92954 1404 aaPredicted RBP15.85■□□□□ 0.13
BRCA1-207ENST00000461798 KIAA0586Q9BVV6 1533 aa15.81■□□□□ 0.12
BRCA1-207ENST00000461798 CARMIL1Q5VZK9 1371 aa15.8■□□□□ 0.12
BRCA1-207ENST00000461798 CUL7Q14999 1698 aa15.79■□□□□ 0.12
BRCA1-207ENST00000461798 RUSC2Q8N2Y8 1516 aa15.78■□□□□ 0.12
BRCA1-207ENST00000461798 NPM1P06748 294 aaKnown RBP eCLIP15.66■□□□□ 0.1
BRCA1-207ENST00000461798 RNF39Q9H2S5 420 aa15.66■□□□□ 0.1
BRCA1-207ENST00000461798 RAPGEF2Q9Y4G8 1499 aa15.65■□□□□ 0.1
BRCA1-207ENST00000461798 PTPRGP23470 1445 aa15.64■□□□□ 0.09
BRCA1-207ENST00000461798 CARMIL2Q6F5E8 1435 aa15.63■□□□□ 0.09
BRCA1-207ENST00000461798 DCAF8L1A6NGE4 600 aa15.63■□□□□ 0.09
BRCA1-207ENST00000461798 TNIKQ9UKE5 1360 aa15.62■□□□□ 0.09
BRCA1-207ENST00000461798 IQGAP2Q13576 1575 aa15.6■□□□□ 0.09
BRCA1-207ENST00000461798 MAPKBP1O60336 1514 aa15.59■□□□□ 0.09
BRCA1-207ENST00000461798 ADCY10Q96PN6 1610 aa15.58■□□□□ 0.09
BRCA1-207ENST00000461798 ABCC10Q5T3U5 1492 aa15.58■□□□□ 0.08
BRCA1-207ENST00000461798 DISP1Q96F81 1524 aa15.57■□□□□ 0.08
BRCA1-207ENST00000461798 FAM69CQ0P6D2 419 aa15.56■□□□□ 0.08
BRCA1-207ENST00000461798 UGGT2Q9NYU1 1516 aa15.56■□□□□ 0.08
BRCA1-207ENST00000461798 PRXQ9BXM0 1461 aa15.55■□□□□ 0.08
BRCA1-207ENST00000461798 UHRF1BP1LA0JNW5 1464 aa15.52■□□□□ 0.08
BRCA1-207ENST00000461798 UACAQ9BZF9 1416 aa15.51■□□□□ 0.07
BRCA1-207ENST00000461798 TTBK1Q5TCY1 1321 aaPredicted RBP15.51■□□□□ 0.07
BRCA1-207ENST00000461798 KIF13AQ9H1H9 1805 aa15.51■□□□□ 0.07
BRCA1-207ENST00000461798 ABCC2Q92887 1545 aa15.51■□□□□ 0.07
BRCA1-207ENST00000461798 CSRNP3Q8WYN3 585 aa15.49■□□□□ 0.07
BRCA1-207ENST00000461798 DIP2BQ9P265 1576 aa15.48■□□□□ 0.07
BRCA1-207ENST00000461798 PLB1Q6P1J6 1458 aa15.46■□□□□ 0.06
BRCA1-207ENST00000461798 KIAA0556O60303 1618 aa15.45■□□□□ 0.06
BRCA1-207ENST00000461798 GOLGA3Q08378 1498 aa15.45■□□□□ 0.06
BRCA1-207ENST00000461798 ASXL2Q76L83 1435 aa15.44■□□□□ 0.06
BRCA1-207ENST00000461798 KDM5BQ9UGL1 1544 aa15.44■□□□□ 0.06
BRCA1-207ENST00000461798 HOXD11P31277 338 aaPredicted RBP15.43■□□□□ 0.06
BRCA1-207ENST00000461798 EEA1Q15075 1411 aa15.43■□□□□ 0.06
BRCA1-207ENST00000461798 CTTNBP2Q8WZ74 1663 aa15.4■□□□□ 0.06
BRCA1-207ENST00000461798 GLI2P10070 1586 aa15.39■□□□□ 0.05
BRCA1-207ENST00000461798 EPRSP07814 1512 aaKnown RBP15.35■□□□□ 0.05
BRCA1-207ENST00000461798 C1QBPQ07021 282 aaKnown RBP15.35■□□□□ 0.05
BRCA1-207ENST00000461798 FAM9AQ8IZU1 332 aaPredicted RBP15.35■□□□□ 0.05
BRCA1-207ENST00000461798 ABCA8O94911 1581 aa15.34■□□□□ 0.05
BRCA1-207ENST00000461798 ZCCHC11Q5TAX3 1644 aaKnown RBP15.32■□□□□ 0.04
BRCA1-207ENST00000461798 P3H3Q8IVL6 736 aa15.3■□□□□ 0.04
BRCA1-207ENST00000461798 WDR7Q9Y4E6 1490 aa15.3■□□□□ 0.04
BRCA1-207ENST00000461798 KDM6BO15054 1643 aa15.29■□□□□ 0.04
BRCA1-207ENST00000461798 TSPOAP1O95153 1857 aa15.27■□□□□ 0.04
BRCA1-207ENST00000461798 SAMD9Q5K651 1589 aa15.27■□□□□ 0.03
BRCA1-207ENST00000461798 PPRC1Q5VV67 1664 aaKnown RBP15.26■□□□□ 0.03
BRCA1-207ENST00000461798 MAP3K4Q9Y6R4 1608 aa15.25■□□□□ 0.03
BRCA1-207ENST00000461798 ATP10BO94823 1461 aa15.25■□□□□ 0.03
BRCA1-207ENST00000461798 TEX14Q8IWB6 1497 aa15.25■□□□□ 0.03
BRCA1-207ENST00000461798 KCNH8Q96L42 1107 aa15.24■□□□□ 0.03
BRCA1-207ENST00000461798 COL17A1Q9UMD9 1497 aaPredicted RBP15.23■□□□□ 0.03
BRCA1-207ENST00000461798 KIF21BO75037 1637 aa15.22■□□□□ 0.03
BRCA1-207ENST00000461798 MAGI3Q5TCQ9 1506 aa15.22■□□□□ 0.03
BRCA1-207ENST00000461798 CD109Q6YHK3 1445 aa15.21■□□□□ 0.03
BRCA1-207ENST00000461798 KDM4FA0A1W2PPD8 638 aa15.18■□□□□ 0.02
BRCA1-207ENST00000461798 ARID3CA6NKF2 412 aa15.18■□□□□ 0.02
BRCA1-207ENST00000461798 RANGAP1P46060 587 aaPredicted RBP15.17■□□□□ 0.02
BRCA1-207ENST00000461798 FHOD3Q2V2M9 1422 aa15.17■□□□□ 0.02
BRCA1-207ENST00000461798 PPP4R3CPQ6ZMV5 832 aa15.16■□□□□ 0.02
BRCA1-207ENST00000461798 CFAP43Q8NDM7 1665 aa15.16■□□□□ 0.02
BRCA1-207ENST00000461798 NUP153P49790 1475 aaKnown RBP15.15■□□□□ 0.02
BRCA1-207ENST00000461798 RAPGEF6Q8TEU7 1601 aa15.15■□□□□ 0.02
BRCA1-207ENST00000461798 UBTFP17480 764 aaKnown RBP15.15■□□□□ 0.02
BRCA1-207ENST00000461798 EFCAB5A4FU69 1503 aa15.15■□□□□ 0.02
BRCA1-207ENST00000461798 PHLDB1Q86UU1 1377 aa15.12■□□□□ 0.01
BRCA1-207ENST00000461798 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.12■□□□□ 0.01
BRCA1-207ENST00000461798 HNRNPUL2Q1KMD3 747 aaKnown RBP15.12■□□□□ 0.01
BRCA1-207ENST00000461798 PLEKHD1A6NEE1 506 aa15.11■□□□□ 0.01
BRCA1-207ENST00000461798 ARAP3Q8WWN8 1544 aa15.09■□□□□ 0.01
BRCA1-207ENST00000461798 RNF216Q9NWF9 866 aaPredicted RBP15.09■□□□□ 0.01
BRCA1-207ENST00000461798 ABCA9Q8IUA7 1624 aa15.09■□□□□ 0.01
BRCA1-207ENST00000461798 EHMT2Q96KQ7 1210 aa15.06■□□□□ 0
BRCA1-207ENST00000461798 ARHGAP35Q9NRY4 1499 aa15.06■□□□□ 0
BRCA1-207ENST00000461798 FMN1Q68DA7 1419 aa15.05■□□□□ -0
BRCA1-207ENST00000461798 NEO1Q92859 1461 aa15.05■□□□□ -0
BRCA1-207ENST00000461798 CNKSR2Q8WXI2 1034 aa15.03■□□□□ -0
BRCA1-207ENST00000461798 ADGRL1O94910 1474 aa15.02■□□□□ -0
BRCA1-207ENST00000461798 RAPGEF3O95398 923 aa15□□□□□ -0.01
BRCA1-207ENST00000461798 CDK11AQ9UQ88 783 aaPredicted RBP14.98□□□□□ -0.01
BRCA1-207ENST00000461798 CDK13Q14004 1512 aaKnown RBP14.97□□□□□ -0.01
BRCA1-207ENST00000461798 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.97□□□□□ -0.01
BRCA1-207ENST00000461798 AKNAQ7Z591 1439 aa14.96□□□□□ -0.01
BRCA1-207ENST00000461798 ATP1B4Q9UN42 357 aaPredicted RBP14.96□□□□□ -0.01
BRCA1-207ENST00000461798 PLCH2O75038 1416 aa14.94□□□□□ -0.02
BRCA1-207ENST00000461798 HECW1Q76N89 1606 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms