RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	FHAD1	B1AJZ9	1412 aa		13.87	□□□□□ -0.19
SYNE1-215	ENST00000460912	SNAPC4	Q5SXM2	1469 aa		13.87	□□□□□ -0.19
SYNE1-215	ENST00000460912	NUP160	Q12769	1436 aa		13.86	□□□□□ -0.19
SYNE1-215	ENST00000460912	SYNJ2	O15056	1496 aa		13.86	□□□□□ -0.19
SYNE1-215	ENST00000460912	GRIN2A	Q12879	1464 aa		13.84	□□□□□ -0.19
SYNE1-215	ENST00000460912	UGGT2	Q9NYU1	1516 aa		13.84	□□□□□ -0.19
SYNE1-215	ENST00000460912	TDRD9	Q8NDG6	1382 aa	Known RBP	13.82	□□□□□ -0.2
SYNE1-215	ENST00000460912	ARAP1	Q96P48	1450 aa		13.82	□□□□□ -0.2
SYNE1-215	ENST00000460912	ZEB1	P37275	1124 aa	Predicted RBP	13.82	□□□□□ -0.2
SYNE1-215	ENST00000460912	VPS8	Q8N3P4	1428 aa		13.81	□□□□□ -0.2
SYNE1-215	ENST00000460912	CLIP1	P30622	1438 aa		13.8	□□□□□ -0.2
SYNE1-215	ENST00000460912	EFCAB5	A4FU69	1503 aa		13.79	□□□□□ -0.2
SYNE1-215	ENST00000460912	CARMIL1	Q5VZK9	1371 aa		13.79	□□□□□ -0.2
SYNE1-215	ENST00000460912	IQGAP2	Q13576	1575 aa		13.78	□□□□□ -0.2
SYNE1-215	ENST00000460912	KIAA0556	O60303	1618 aa		13.75	□□□□□ -0.21
SYNE1-215	ENST00000460912	ARHGAP35	Q9NRY4	1499 aa		13.74	□□□□□ -0.21
SYNE1-215	ENST00000460912	CFAP43	Q8NDM7	1665 aa		13.74	□□□□□ -0.21
SYNE1-215	ENST00000460912	DISP1	Q96F81	1524 aa		13.74	□□□□□ -0.21
SYNE1-215	ENST00000460912	KIAA0586	Q9BVV6	1533 aa		13.71	□□□□□ -0.21
SYNE1-215	ENST00000460912	MAP3K1	Q13233	1512 aa		13.68	□□□□□ -0.22
SYNE1-215	ENST00000460912	PCF11	O94913	1555 aa	Known RBP	13.63	□□□□□ -0.23
SYNE1-215	ENST00000460912	ABCA8	O94911	1581 aa		13.62	□□□□□ -0.23
SYNE1-215	ENST00000460912	RRBP1	Q9P2E9	1410 aa	Known RBP	13.61	□□□□□ -0.23
SYNE1-215	ENST00000460912	ERCC6L2	Q5T890	1561 aa		13.61	□□□□□ -0.23
SYNE1-215	ENST00000460912	EHMT2	Q96KQ7	1210 aa		13.61	□□□□□ -0.23
SYNE1-215	ENST00000460912	ADCY10	Q96PN6	1610 aa		13.58	□□□□□ -0.24
SYNE1-215	ENST00000460912	TIAM1	Q13009	1591 aa		13.56	□□□□□ -0.24
SYNE1-215	ENST00000460912	RAPGEF6	Q8TEU7	1601 aa		13.55	□□□□□ -0.24
SYNE1-215	ENST00000460912	ARHGEF11	O15085	1522 aa		13.54	□□□□□ -0.24
SYNE1-215	ENST00000460912	FYCO1	Q9BQS8	1478 aa		13.54	□□□□□ -0.24
SYNE1-215	ENST00000460912	CASKIN1	Q8WXD9	1431 aa		13.5	□□□□□ -0.25
SYNE1-215	ENST00000460912	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.5	□□□□□ -0.25
SYNE1-215	ENST00000460912	MAGI3	Q5TCQ9	1506 aa		13.5	□□□□□ -0.25
SYNE1-215	ENST00000460912	HECW1	Q76N89	1606 aa		13.5	□□□□□ -0.25
SYNE1-215	ENST00000460912	UBTF	P17480	764 aa	Known RBP	13.5	□□□□□ -0.25
SYNE1-215	ENST00000460912	UHRF1BP1L	A0JNW5	1464 aa		13.47	□□□□□ -0.25
SYNE1-215	ENST00000460912	NUP153	P49790	1475 aa	Known RBP	13.44	□□□□□ -0.26
SYNE1-215	ENST00000460912	KDM5B	Q9UGL1	1544 aa		13.44	□□□□□ -0.26
SYNE1-215	ENST00000460912	RIMBP3C	A6NJZ7	1639 aa		13.43	□□□□□ -0.26
SYNE1-215	ENST00000460912	RIMBP3B	A6NNM3	1639 aa		13.43	□□□□□ -0.26
SYNE1-215	ENST00000460912	RIMBP3	Q9UFD9	1639 aa		13.43	□□□□□ -0.26
SYNE1-215	ENST00000460912	ZCCHC11	Q5TAX3	1644 aa	Known RBP	13.42	□□□□□ -0.26
SYNE1-215	ENST00000460912	FHOD3	Q2V2M9	1422 aa		13.42	□□□□□ -0.26
SYNE1-215	ENST00000460912	LRRC9	Q6ZRR7	1453 aa		13.4	□□□□□ -0.26
SYNE1-215	ENST00000460912	ABCC2	Q92887	1545 aa		13.4	□□□□□ -0.26
SYNE1-215	ENST00000460912	MAPKBP1	O60336	1514 aa		13.4	□□□□□ -0.27
SYNE1-215	ENST00000460912	KANK4	Q5T7N3	995 aa	Predicted RBP	13.39	□□□□□ -0.27
SYNE1-215	ENST00000460912	FMN1	Q68DA7	1419 aa		13.39	□□□□□ -0.27
SYNE1-215	ENST00000460912	DHX57	Q6P158	1386 aa	Known RBP	13.39	□□□□□ -0.27
SYNE1-215	ENST00000460912	CCDC18	Q5T9S5	1454 aa		13.37	□□□□□ -0.27
SYNE1-215	ENST00000460912	EPRS	P07814	1512 aa	Known RBP	13.37	□□□□□ -0.27
SYNE1-215	ENST00000460912	PRG4	Q92954	1404 aa	Predicted RBP	13.36	□□□□□ -0.27
SYNE1-215	ENST00000460912	CLSPN	Q9HAW4	1339 aa		13.36	□□□□□ -0.27
SYNE1-215	ENST00000460912	CDC42BPA	Q5VT25	1732 aa		13.36	□□□□□ -0.27
SYNE1-215	ENST00000460912	CCER1	Q8TC90	406 aa	Predicted RBP	13.34	□□□□□ -0.27
SYNE1-215	ENST00000460912	EHBP1L1	Q8N3D4	1523 aa		13.34	□□□□□ -0.27
SYNE1-215	ENST00000460912	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.33	□□□□□ -0.28
SYNE1-215	ENST00000460912	PLB1	Q6P1J6	1458 aa		13.32	□□□□□ -0.28
SYNE1-215	ENST00000460912	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
SYNE1-215	ENST00000460912	CROCC2	H7BZ55	1655 aa		13.32	□□□□□ -0.28
SYNE1-215	ENST00000460912	KIF14	Q15058	1648 aa		13.32	□□□□□ -0.28
SYNE1-215	ENST00000460912	CDC42BPB	Q9Y5S2	1711 aa		13.32	□□□□□ -0.28
SYNE1-215	ENST00000460912	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.31	□□□□□ -0.28
SYNE1-215	ENST00000460912	CDK13	Q14004	1512 aa	Known RBP	13.3	□□□□□ -0.28
SYNE1-215	ENST00000460912	ABCC10	Q5T3U5	1492 aa		13.29	□□□□□ -0.28
SYNE1-215	ENST00000460912	ATP10B	O94823	1461 aa		13.29	□□□□□ -0.28
SYNE1-215	ENST00000460912	JPH4	Q96JJ6	628 aa		13.29	□□□□□ -0.28
SYNE1-215	ENST00000460912	PREX2	Q70Z35	1606 aa		13.28	□□□□□ -0.28
SYNE1-215	ENST00000460912	CCNB3	Q8WWL7	1395 aa		13.28	□□□□□ -0.28
SYNE1-215	ENST00000460912	CARMIL2	Q6F5E8	1435 aa		13.28	□□□□□ -0.28
SYNE1-215	ENST00000460912	PHLDB1	Q86UU1	1377 aa		13.27	□□□□□ -0.29
SYNE1-215	ENST00000460912	ABCA9	Q8IUA7	1624 aa		13.27	□□□□□ -0.29
SYNE1-215	ENST00000460912	PPRC1	Q5VV67	1664 aa	Known RBP	13.27	□□□□□ -0.29
SYNE1-215	ENST00000460912	ITSN2	Q9NZM3	1697 aa		13.27	□□□□□ -0.29
SYNE1-215	ENST00000460912	TCOF1	Q13428	1488 aa	Known RBP	13.26	□□□□□ -0.29
SYNE1-215	ENST00000460912	SCAF1	Q9H7N4	1312 aa	Known RBP	13.25	□□□□□ -0.29
SYNE1-215	ENST00000460912	MAP3K4	Q9Y6R4	1608 aa		13.25	□□□□□ -0.29
SYNE1-215	ENST00000460912	UACA	Q9BZF9	1416 aa		13.25	□□□□□ -0.29
SYNE1-215	ENST00000460912	KIF13A	Q9H1H9	1805 aa		13.24	□□□□□ -0.29
SYNE1-215	ENST00000460912	TTC37	Q6PGP7	1564 aa		13.24	□□□□□ -0.29
SYNE1-215	ENST00000460912	ARAP3	Q8WWN8	1544 aa		13.23	□□□□□ -0.29
SYNE1-215	ENST00000460912	MYO5C	Q9NQX4	1742 aa		13.22	□□□□□ -0.29
SYNE1-215	ENST00000460912	GCC2	Q8IWJ2	1684 aa		13.22	□□□□□ -0.29
SYNE1-215	ENST00000460912	GLI2	P10070	1586 aa		13.22	□□□□□ -0.29
SYNE1-215	ENST00000460912	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
SYNE1-215	ENST00000460912	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.2	□□□□□ -0.3
SYNE1-215	ENST00000460912	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.19	□□□□□ -0.3
SYNE1-215	ENST00000460912	DIEXF	Q68CQ4	756 aa	Known RBP	13.17	□□□□□ -0.3
SYNE1-215	ENST00000460912	PTPN23	Q9H3S7	1636 aa		13.17	□□□□□ -0.3
SYNE1-215	ENST00000460912	ADGB	Q8N7X0	1667 aa		13.16	□□□□□ -0.3
SYNE1-215	ENST00000460912	PTPRG	P23470	1445 aa		13.16	□□□□□ -0.3
SYNE1-215	ENST00000460912	NCOA2	Q15596	1464 aa		13.16	□□□□□ -0.3
SYNE1-215	ENST00000460912	DNMT1	P26358	1616 aa	Known RBP	13.16	□□□□□ -0.3
SYNE1-215	ENST00000460912	OSCAR	Q8IYS5	282 aa		13.15	□□□□□ -0.3
SYNE1-215	ENST00000460912	SAMD9L	Q8IVG5	1584 aa		13.15	□□□□□ -0.3
SYNE1-215	ENST00000460912	TRO	Q12816	1431 aa	Predicted RBP	13.15	□□□□□ -0.3
SYNE1-215	ENST00000460912	RAB3GAP2	Q9H2M9	1393 aa		13.14	□□□□□ -0.31
SYNE1-215	ENST00000460912	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.14	□□□□□ -0.31
SYNE1-215	ENST00000460912	DENND4B	O75064	1496 aa	Predicted RBP	13.14	□□□□□ -0.31
SYNE1-215	ENST00000460912	ARHGEF5	Q12774	1597 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms