RNA–Protein interactions for RNA: ENST00000460483.5

SMNDC1-203, Transcript of survival motor neuron domain containing 1, humanhuman

TSL 3

Gene SMNDC1, Length 753 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-203ENST00000460483 CUL7Q14999 1698 aa18.01■□□□□ 0.47
SMNDC1-203ENST00000460483 RUSC2Q8N2Y8 1516 aa18■□□□□ 0.47
SMNDC1-203ENST00000460483 OSCARQ8IYS5 282 aa18■□□□□ 0.47
SMNDC1-203ENST00000460483 PBRM1Q86U86 1689 aa17.99■□□□□ 0.47
SMNDC1-203ENST00000460483 CNKSR2Q8WXI2 1034 aa17.98■□□□□ 0.47
SMNDC1-203ENST00000460483 RAPGEF2Q9Y4G8 1499 aa17.98■□□□□ 0.47
SMNDC1-203ENST00000460483 HOXD11P31277 338 aaPredicted RBP17.96■□□□□ 0.47
SMNDC1-203ENST00000460483 ADAMTS12P58397 1594 aa17.96■□□□□ 0.46
SMNDC1-203ENST00000460483 PRXQ9BXM0 1461 aa17.95■□□□□ 0.46
SMNDC1-203ENST00000460483 GRIN2AQ12879 1464 aa17.94■□□□□ 0.46
SMNDC1-203ENST00000460483 CACNB1Q02641 598 aaPredicted RBP17.92■□□□□ 0.46
SMNDC1-203ENST00000460483 UBTFP17480 764 aaKnown RBP17.87■□□□□ 0.45
SMNDC1-203ENST00000460483 GOLGA3Q08378 1498 aa17.86■□□□□ 0.45
SMNDC1-203ENST00000460483 NUP160Q12769 1436 aa17.84■□□□□ 0.45
SMNDC1-203ENST00000460483 KIF21BO75037 1637 aa17.83■□□□□ 0.45
SMNDC1-203ENST00000460483 RNF216Q9NWF9 866 aaPredicted RBP17.83■□□□□ 0.44
SMNDC1-203ENST00000460483 KIAA0586Q9BVV6 1533 aa17.81■□□□□ 0.44
SMNDC1-203ENST00000460483 CHD1O14646 1710 aa17.77■□□□□ 0.44
SMNDC1-203ENST00000460483 JPH4Q96JJ6 628 aa17.76■□□□□ 0.43
SMNDC1-203ENST00000460483 CEP170Q5SW79 1584 aa17.72■□□□□ 0.43
SMNDC1-203ENST00000460483 EHMT2Q96KQ7 1210 aa17.72■□□□□ 0.43
SMNDC1-203ENST00000460483 CARMIL2Q6F5E8 1435 aa17.72■□□□□ 0.43
SMNDC1-203ENST00000460483 TNIKQ9UKE5 1360 aa17.71■□□□□ 0.43
SMNDC1-203ENST00000460483 CLASP1Q7Z460 1538 aa17.69■□□□□ 0.42
SMNDC1-203ENST00000460483 IQGAP2Q13576 1575 aa17.69■□□□□ 0.42
SMNDC1-203ENST00000460483 DNAJC5Q9H3Z4 198 aa17.65■□□□□ 0.42
SMNDC1-203ENST00000460483 RNF39Q9H2S5 420 aa17.64■□□□□ 0.41
SMNDC1-203ENST00000460483 PRG4Q92954 1404 aaPredicted RBP17.64■□□□□ 0.41
SMNDC1-203ENST00000460483 LOC105371045A0A1W2PR82 267 aa17.62■□□□□ 0.41
SMNDC1-203ENST00000460483 UGGT2Q9NYU1 1516 aa17.62■□□□□ 0.41
SMNDC1-203ENST00000460483 NCBP3Q53F19 620 aaKnown RBP17.6■□□□□ 0.41
SMNDC1-203ENST00000460483 CTTNBP2Q8WZ74 1663 aa17.6■□□□□ 0.41
SMNDC1-203ENST00000460483 RANGAP1P46060 587 aaPredicted RBP17.59■□□□□ 0.41
SMNDC1-203ENST00000460483 EFCAB5A4FU69 1503 aa17.57■□□□□ 0.4
SMNDC1-203ENST00000460483 SHROOM2Q13796 1616 aa17.56■□□□□ 0.4
SMNDC1-203ENST00000460483 CLIP1P30622 1438 aa17.54■□□□□ 0.4
SMNDC1-203ENST00000460483 PTPRGP23470 1445 aa17.53■□□□□ 0.4
SMNDC1-203ENST00000460483 ARHGEF11O15085 1522 aa17.52■□□□□ 0.4
SMNDC1-203ENST00000460483 CEP162Q5TB80 1403 aa17.5■□□□□ 0.39
SMNDC1-203ENST00000460483 DISP1Q96F81 1524 aa17.5■□□□□ 0.39
SMNDC1-203ENST00000460483 P3H3Q8IVL6 736 aa17.49■□□□□ 0.39
SMNDC1-203ENST00000460483 FMN1Q68DA7 1419 aa17.48■□□□□ 0.39
SMNDC1-203ENST00000460483 KIAA0556O60303 1618 aa17.47■□□□□ 0.39
SMNDC1-203ENST00000460483 CYB5RLQ6IPT4 315 aa17.46■□□□□ 0.39
SMNDC1-203ENST00000460483 TTBK1Q5TCY1 1321 aaPredicted RBP17.46■□□□□ 0.38
SMNDC1-203ENST00000460483 NPM1P06748 294 aaKnown RBP eCLIP17.45■□□□□ 0.38
SMNDC1-203ENST00000460483 SAMD9Q5K651 1589 aa17.45■□□□□ 0.38
SMNDC1-203ENST00000460483 ARHGAP35Q9NRY4 1499 aa17.44■□□□□ 0.38
SMNDC1-203ENST00000460483 FHOD3Q2V2M9 1422 aa17.41■□□□□ 0.38
SMNDC1-203ENST00000460483 RIMBP3CA6NJZ7 1639 aa17.41■□□□□ 0.38
SMNDC1-203ENST00000460483 RIMBP3BA6NNM3 1639 aa17.41■□□□□ 0.38
SMNDC1-203ENST00000460483 RIMBP3Q9UFD9 1639 aa17.41■□□□□ 0.38
SMNDC1-203ENST00000460483 C1QBPQ07021 282 aaKnown RBP17.4■□□□□ 0.38
SMNDC1-203ENST00000460483 UACAQ9BZF9 1416 aa17.39■□□□□ 0.38
SMNDC1-203ENST00000460483 ARAP1Q96P48 1450 aa17.37■□□□□ 0.37
SMNDC1-203ENST00000460483 ERCC6L2Q5T890 1561 aa17.37■□□□□ 0.37
SMNDC1-203ENST00000460483 APLP2Q06481 763 aa17.35■□□□□ 0.37
SMNDC1-203ENST00000460483 ATP1B4Q9UN42 357 aaPredicted RBP17.35■□□□□ 0.37
SMNDC1-203ENST00000460483 UHRF1BP1LA0JNW5 1464 aa17.34■□□□□ 0.37
SMNDC1-203ENST00000460483 CDK11AQ9UQ88 783 aaPredicted RBP17.34■□□□□ 0.37
SMNDC1-203ENST00000460483 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.31■□□□□ 0.36
SMNDC1-203ENST00000460483 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
SMNDC1-203ENST00000460483 VPS8Q8N3P4 1428 aa17.3■□□□□ 0.36
SMNDC1-203ENST00000460483 ABCC2Q92887 1545 aa17.3■□□□□ 0.36
SMNDC1-203ENST00000460483 CASKIN1Q8WXD9 1431 aa17.3■□□□□ 0.36
SMNDC1-203ENST00000460483 NPM3O75607 178 aaKnown RBP17.29■□□□□ 0.36
SMNDC1-203ENST00000460483 PLB1Q6P1J6 1458 aa17.29■□□□□ 0.36
SMNDC1-203ENST00000460483 FYCO1Q9BQS8 1478 aa17.27■□□□□ 0.36
SMNDC1-203ENST00000460483 ABCA8O94911 1581 aa17.26■□□□□ 0.35
SMNDC1-203ENST00000460483 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.25■□□□□ 0.351e-8■■■□□ 15.4
SMNDC1-203ENST00000460483 RAPGEF6Q8TEU7 1601 aa17.25■□□□□ 0.35
SMNDC1-203ENST00000460483 CCDC18Q5T9S5 1454 aa17.24■□□□□ 0.35
SMNDC1-203ENST00000460483 PLEKHD1A6NEE1 506 aa17.24■□□□□ 0.35
SMNDC1-203ENST00000460483 HECW1Q76N89 1606 aa17.23■□□□□ 0.35
SMNDC1-203ENST00000460483 KDM5BQ9UGL1 1544 aa17.22■□□□□ 0.35
SMNDC1-203ENST00000460483 NUP153P49790 1475 aaKnown RBP17.2■□□□□ 0.34
SMNDC1-203ENST00000460483 ATP10BO94823 1461 aa17.18■□□□□ 0.34
SMNDC1-203ENST00000460483 EPRSP07814 1512 aaKnown RBP17.17■□□□□ 0.34
SMNDC1-203ENST00000460483 ADCY10Q96PN6 1610 aa17.17■□□□□ 0.34
SMNDC1-203ENST00000460483 ARID3CA6NKF2 412 aa17.16■□□□□ 0.34
SMNDC1-203ENST00000460483 PCF11O94913 1555 aaKnown RBP17.15■□□□□ 0.34
SMNDC1-203ENST00000460483 MAPKBP1O60336 1514 aa17.13■□□□□ 0.33
SMNDC1-203ENST00000460483 MAP3K1Q13233 1512 aa17.13■□□□□ 0.33
SMNDC1-203ENST00000460483 MTUS2Q5JR59 1369 aa17.13■□□□□ 0.33
SMNDC1-203ENST00000460483 ASXL2Q76L83 1435 aa17.12■□□□□ 0.33
SMNDC1-203ENST00000460483 WDR7Q9Y4E6 1490 aa17.1■□□□□ 0.33
SMNDC1-203ENST00000460483 ZCCHC11Q5TAX3 1644 aaKnown RBP17.08■□□□□ 0.32
SMNDC1-203ENST00000460483 KCNH8Q96L42 1107 aa17.08■□□□□ 0.32
SMNDC1-203ENST00000460483 TROQ12816 1431 aaPredicted RBP17.07■□□□□ 0.32
SMNDC1-203ENST00000460483 CDK13Q14004 1512 aaKnown RBP17.06■□□□□ 0.32
SMNDC1-203ENST00000460483 TRHP20396 242 aaPredicted RBP17.05■□□□□ 0.32
SMNDC1-203ENST00000460483 FAM69CQ0P6D2 419 aa17.04■□□□□ 0.32
SMNDC1-203ENST00000460483 TIAM1Q13009 1591 aa17.02■□□□□ 0.32
SMNDC1-203ENST00000460483 ABCC10Q5T3U5 1492 aa17.02■□□□□ 0.32
SMNDC1-203ENST00000460483 EHBP1L1Q8N3D4 1523 aa17.01■□□□□ 0.31
SMNDC1-203ENST00000460483 LRRC9Q6ZRR7 1453 aa17■□□□□ 0.31
SMNDC1-203ENST00000460483 KIF14Q15058 1648 aa16.97■□□□□ 0.31
SMNDC1-203ENST00000460483 CFAP43Q8NDM7 1665 aa16.95■□□□□ 0.3
SMNDC1-203ENST00000460483 GLI2P10070 1586 aa16.95■□□□□ 0.3
SMNDC1-203ENST00000460483 CCNB3Q8WWL7 1395 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms