RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 RIMBP3Q9UFD9 1639 aa17.81■□□□□ 0.44
UBR4-208ENST00000459947 PRXQ9BXM0 1461 aa17.79■□□□□ 0.44
UBR4-208ENST00000459947 CSRNP3Q8WYN3 585 aa17.78■□□□□ 0.44
UBR4-208ENST00000459947 IQGAP2Q13576 1575 aa17.73■□□□□ 0.43
UBR4-208ENST00000459947 KIF21BO75037 1637 aa17.72■□□□□ 0.43
UBR4-208ENST00000459947 CTTNBP2Q8WZ74 1663 aa17.71■□□□□ 0.43
UBR4-208ENST00000459947 JPH4Q96JJ6 628 aa17.69■□□□□ 0.42
UBR4-208ENST00000459947 CARMIL2Q6F5E8 1435 aa17.69■□□□□ 0.42
UBR4-208ENST00000459947 PRG4Q92954 1404 aaPredicted RBP17.67■□□□□ 0.42
UBR4-208ENST00000459947 ARAP1Q96P48 1450 aa17.66■□□□□ 0.42
UBR4-208ENST00000459947 UGGT2Q9NYU1 1516 aa17.66■□□□□ 0.42
UBR4-208ENST00000459947 GOLGA3Q08378 1498 aa17.65■□□□□ 0.42
UBR4-208ENST00000459947 FAM9AQ8IZU1 332 aaPredicted RBP17.59■□□□□ 0.41
UBR4-208ENST00000459947 TNIKQ9UKE5 1360 aa17.56■□□□□ 0.4
UBR4-208ENST00000459947 CYB5RLQ6IPT4 315 aa17.55■□□□□ 0.4
UBR4-208ENST00000459947 ERCC6L2Q5T890 1561 aa17.54■□□□□ 0.4
UBR4-208ENST00000459947 KIAA0556O60303 1618 aa17.54■□□□□ 0.4
UBR4-208ENST00000459947 PTPRGP23470 1445 aa17.51■□□□□ 0.39
UBR4-208ENST00000459947 EFCAB5A4FU69 1503 aa17.51■□□□□ 0.39
UBR4-208ENST00000459947 DISP1Q96F81 1524 aa17.51■□□□□ 0.39
UBR4-208ENST00000459947 SAMD9Q5K651 1589 aa17.46■□□□□ 0.39
UBR4-208ENST00000459947 UHRF1BP1LA0JNW5 1464 aa17.46■□□□□ 0.39
UBR4-208ENST00000459947 UBTFP17480 764 aaKnown RBP17.44■□□□□ 0.38
UBR4-208ENST00000459947 NPM1P06748 294 aaKnown RBP eCLIP17.43■□□□□ 0.38
UBR4-208ENST00000459947 UACAQ9BZF9 1416 aa17.41■□□□□ 0.38
UBR4-208ENST00000459947 ABCC2Q92887 1545 aa17.4■□□□□ 0.38
UBR4-208ENST00000459947 ADCY10Q96PN6 1610 aa17.37■□□□□ 0.37
UBR4-208ENST00000459947 MAPKBP1O60336 1514 aa17.36■□□□□ 0.37
UBR4-208ENST00000459947 ABCA8O94911 1581 aa17.34■□□□□ 0.37
UBR4-208ENST00000459947 FMN1Q68DA7 1419 aa17.31■□□□□ 0.36
UBR4-208ENST00000459947 KDM5BQ9UGL1 1544 aa17.31■□□□□ 0.36
UBR4-208ENST00000459947 PLB1Q6P1J6 1458 aa17.29■□□□□ 0.36
UBR4-208ENST00000459947 RAPGEF6Q8TEU7 1601 aa17.28■□□□□ 0.36
UBR4-208ENST00000459947 FHOD3Q2V2M9 1422 aa17.26■□□□□ 0.35
UBR4-208ENST00000459947 ARHGAP35Q9NRY4 1499 aa17.26■□□□□ 0.35
UBR4-208ENST00000459947 TTBK1Q5TCY1 1321 aaPredicted RBP17.24■□□□□ 0.35
UBR4-208ENST00000459947 ZCCHC11Q5TAX3 1644 aaKnown RBP17.24■□□□□ 0.35
UBR4-208ENST00000459947 CLIP1P30622 1438 aa17.24■□□□□ 0.35
UBR4-208ENST00000459947 HECW1Q76N89 1606 aa17.22■□□□□ 0.35
UBR4-208ENST00000459947 P3H3Q8IVL6 736 aa17.22■□□□□ 0.35
UBR4-208ENST00000459947 ABCC10Q5T3U5 1492 aa17.21■□□□□ 0.35
UBR4-208ENST00000459947 TRHP20396 242 aaPredicted RBP17.2■□□□□ 0.34
UBR4-208ENST00000459947 GLI2P10070 1586 aa17.19■□□□□ 0.34
UBR4-208ENST00000459947 ASXL2Q76L83 1435 aa17.18■□□□□ 0.34
UBR4-208ENST00000459947 RANGAP1P46060 587 aaPredicted RBP17.18■□□□□ 0.34
UBR4-208ENST00000459947 EHMT2Q96KQ7 1210 aa17.18■□□□□ 0.34
UBR4-208ENST00000459947 WDR7Q9Y4E6 1490 aa17.17■□□□□ 0.34
UBR4-208ENST00000459947 DIP2BQ9P265 1576 aa17.17■□□□□ 0.34
UBR4-208ENST00000459947 CEP162Q5TB80 1403 aa17.15■□□□□ 0.34
UBR4-208ENST00000459947 NUP153P49790 1475 aaKnown RBP17.15■□□□□ 0.34
UBR4-208ENST00000459947 CCDC18Q5T9S5 1454 aa17.14■□□□□ 0.33
UBR4-208ENST00000459947 CASKIN1Q8WXD9 1431 aa17.14■□□□□ 0.33
UBR4-208ENST00000459947 ATP10BO94823 1461 aa17.14■□□□□ 0.33
UBR4-208ENST00000459947 FYCO1Q9BQS8 1478 aa17.13■□□□□ 0.33
UBR4-208ENST00000459947 KIF13AQ9H1H9 1805 aa17.13■□□□□ 0.33
UBR4-208ENST00000459947 CDK11AQ9UQ88 783 aaPredicted RBP17.12■□□□□ 0.33
UBR4-208ENST00000459947 EPRSP07814 1512 aaKnown RBP17.11■□□□□ 0.33
UBR4-208ENST00000459947 FAM69CQ0P6D2 419 aa17.09■□□□□ 0.33
UBR4-208ENST00000459947 CFAP43Q8NDM7 1665 aa17.08■□□□□ 0.33
UBR4-208ENST00000459947 TEX14Q8IWB6 1497 aa17.07■□□□□ 0.32
UBR4-208ENST00000459947 PLEKHD1A6NEE1 506 aa17.07■□□□□ 0.32
UBR4-208ENST00000459947 PCF11O94913 1555 aaKnown RBP17.06■□□□□ 0.32
UBR4-208ENST00000459947 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.06■□□□□ 0.32
UBR4-208ENST00000459947 HNRNPUL2Q1KMD3 747 aaKnown RBP17.06■□□□□ 0.32
UBR4-208ENST00000459947 MAP3K4Q9Y6R4 1608 aa17.04■□□□□ 0.32
UBR4-208ENST00000459947 ABCA9Q8IUA7 1624 aa17.02■□□□□ 0.31
UBR4-208ENST00000459947 PHLDB1Q86UU1 1377 aa17.01■□□□□ 0.31
UBR4-208ENST00000459947 MAGI3Q5TCQ9 1506 aa17.01■□□□□ 0.31
UBR4-208ENST00000459947 VPS8Q8N3P4 1428 aa17■□□□□ 0.31
UBR4-208ENST00000459947 ATP1B4Q9UN42 357 aaPredicted RBP16.99■□□□□ 0.31
UBR4-208ENST00000459947 LOC105371045A0A1W2PR82 267 aa16.99■□□□□ 0.31
UBR4-208ENST00000459947 CDK13Q14004 1512 aaKnown RBP16.99■□□□□ 0.31
UBR4-208ENST00000459947 TROQ12816 1431 aaPredicted RBP16.99■□□□□ 0.31
UBR4-208ENST00000459947 KIF14Q15058 1648 aa16.97■□□□□ 0.31
UBR4-208ENST00000459947 CD109Q6YHK3 1445 aa16.97■□□□□ 0.31
UBR4-208ENST00000459947 CFAP74Q9C0B2 1584 aa16.97■□□□□ 0.31
UBR4-208ENST00000459947 MAP3K1Q13233 1512 aa16.95■□□□□ 0.3
UBR4-208ENST00000459947 KCNH8Q96L42 1107 aa16.94■□□□□ 0.3
UBR4-208ENST00000459947 ARAP3Q8WWN8 1544 aa16.94■□□□□ 0.3
UBR4-208ENST00000459947 ARID3CA6NKF2 412 aa16.94■□□□□ 0.3
UBR4-208ENST00000459947 NEO1Q92859 1461 aa16.93■□□□□ 0.3
UBR4-208ENST00000459947 PPRC1Q5VV67 1664 aaKnown RBP16.92■□□□□ 0.3
UBR4-208ENST00000459947 TSPOAP1O95153 1857 aa16.92■□□□□ 0.3
UBR4-208ENST00000459947 EHBP1L1Q8N3D4 1523 aa16.92■□□□□ 0.3
UBR4-208ENST00000459947 LRRIQ1Q96JM4 1722 aa16.91■□□□□ 0.3
UBR4-208ENST00000459947 KDM6BO15054 1643 aa16.9■□□□□ 0.3
UBR4-208ENST00000459947 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.89■□□□□ 0.29
UBR4-208ENST00000459947 MYO5CQ9NQX4 1742 aa16.87■□□□□ 0.29
UBR4-208ENST00000459947 MTUS2Q5JR59 1369 aa16.87■□□□□ 0.29
UBR4-208ENST00000459947 APLP2Q06481 763 aa16.87■□□□□ 0.29
UBR4-208ENST00000459947 TIAM1Q13009 1591 aa16.86■□□□□ 0.29
UBR4-208ENST00000459947 PLCH2O75038 1416 aa16.85■□□□□ 0.29
UBR4-208ENST00000459947 TTC37Q6PGP7 1564 aa16.84■□□□□ 0.29
UBR4-208ENST00000459947 EFCAB2Q5VUJ9 269 aa16.81■□□□□ 0.28
UBR4-208ENST00000459947 SUPT6HQ7KZ85 1726 aaKnown RBP16.81■□□□□ 0.28
UBR4-208ENST00000459947 PREX2Q70Z35 1606 aa16.8■□□□□ 0.28
UBR4-208ENST00000459947 ITSN2Q9NZM3 1697 aa16.8■□□□□ 0.28
UBR4-208ENST00000459947 FANCAO15360 1455 aa16.8■□□□□ 0.28
UBR4-208ENST00000459947 PLEKHH2Q8IVE3 1493 aa16.78■□□□□ 0.28
UBR4-208ENST00000459947 ARHGAP5Q13017 1502 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms