RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 IGF1RP08069 1367 aa16.26■□□□□ 0.19
RFX3-211ENST00000458034 RRBP1Q9P2E9 1410 aaKnown RBP16.26■□□□□ 0.19
RFX3-211ENST00000458034 C1QBPQ07021 282 aaKnown RBP16.25■□□□□ 0.19
RFX3-211ENST00000458034 CARMIL1Q5VZK9 1371 aa16.25■□□□□ 0.19
RFX3-211ENST00000458034 CUL7Q14999 1698 aa16.23■□□□□ 0.19
RFX3-211ENST00000458034 TIAM1Q13009 1591 aa16.21■□□□□ 0.18
RFX3-211ENST00000458034 CNKSR2Q8WXI2 1034 aa16.2■□□□□ 0.18
RFX3-211ENST00000458034 RNF216Q9NWF9 866 aaPredicted RBP16.2■□□□□ 0.18
RFX3-211ENST00000458034 LAMC3Q9Y6N6 1575 aa16.2■□□□□ 0.18
RFX3-211ENST00000458034 ABCA10Q8WWZ4 1543 aa16.19■□□□□ 0.18
RFX3-211ENST00000458034 CENPBP07199 599 aaPredicted RBP16.19■□□□□ 0.18
RFX3-211ENST00000458034 FHAD1B1AJZ9 1412 aa16.19■□□□□ 0.18
RFX3-211ENST00000458034 CFAP43Q8NDM7 1665 aa16.18■□□□□ 0.18
RFX3-211ENST00000458034 TOPBP1Q92547 1522 aa16.18■□□□□ 0.18
RFX3-211ENST00000458034 CTTNBP2Q8WZ74 1663 aa16.18■□□□□ 0.18
RFX3-211ENST00000458034 EFCAB5A4FU69 1503 aa16.17■□□□□ 0.18
RFX3-211ENST00000458034 CCNB3Q8WWL7 1395 aa16.15■□□□□ 0.18
RFX3-211ENST00000458034 KANK4Q5T7N3 995 aaPredicted RBP16.15■□□□□ 0.18
RFX3-211ENST00000458034 WDR97A6NE52 1622 aa16.14■□□□□ 0.17
RFX3-211ENST00000458034 POLA1P09884 1462 aaPredicted RBP16.13■□□□□ 0.17
RFX3-211ENST00000458034 ACIN1Q9UKV3 1341 aaKnown RBP16.13■□□□□ 0.17
RFX3-211ENST00000458034 DHX57Q6P158 1386 aaKnown RBP16.12■□□□□ 0.17
RFX3-211ENST00000458034 LRRC9Q6ZRR7 1453 aa16.09■□□□□ 0.17
RFX3-211ENST00000458034 PCF11O94913 1555 aaKnown RBP16.09■□□□□ 0.17
RFX3-211ENST00000458034 AQRO60306 1485 aaKnown RBP eCLIP16.08■□□□□ 0.16
RFX3-211ENST00000458034 FYCO1Q9BQS8 1478 aa16.07■□□□□ 0.16
RFX3-211ENST00000458034 RAD54L2Q9Y4B4 1467 aa16.07■□□□□ 0.16
RFX3-211ENST00000458034 NESP48681 1621 aa16.05■□□□□ 0.16
RFX3-211ENST00000458034 ABCA5Q8WWZ7 1642 aa16.04■□□□□ 0.16
RFX3-211ENST00000458034 PDS5BQ9NTI5 1447 aa16.02■□□□□ 0.16
RFX3-211ENST00000458034 PELP1Q8IZL8 1130 aaKnown RBP16.02■□□□□ 0.16
RFX3-211ENST00000458034 URB2Q14146 1524 aaKnown RBP16.01■□□□□ 0.15
RFX3-211ENST00000458034 KIF21AQ7Z4S6 1674 aa16.01■□□□□ 0.15
RFX3-211ENST00000458034 CASKIN1Q8WXD9 1431 aa16.01■□□□□ 0.15
RFX3-211ENST00000458034 DNAJC5BQ9UF47 199 aa16■□□□□ 0.15
RFX3-211ENST00000458034 FMN1Q68DA7 1419 aa15.99■□□□□ 0.15
RFX3-211ENST00000458034 NEUROD1Q13562 356 aa15.98■□□□□ 0.15
RFX3-211ENST00000458034 SAMD9Q5K651 1589 aa15.96■□□□□ 0.15
RFX3-211ENST00000458034 FHOD3Q2V2M9 1422 aa15.96■□□□□ 0.15
RFX3-211ENST00000458034 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.96■□□□□ 0.15
RFX3-211ENST00000458034 THOC2Q8NI27 1593 aaKnown RBP15.96■□□□□ 0.14
RFX3-211ENST00000458034 SETD5Q9C0A6 1442 aa15.95■□□□□ 0.14
RFX3-211ENST00000458034 RAB3GAP2Q9H2M9 1393 aa15.94■□□□□ 0.14
RFX3-211ENST00000458034 GAPVD1Q14C86 1478 aa15.94■□□□□ 0.14
RFX3-211ENST00000458034 PHLDB1Q86UU1 1377 aa15.92■□□□□ 0.14
RFX3-211ENST00000458034 PBRM1Q86U86 1689 aa15.9■□□□□ 0.14
RFX3-211ENST00000458034 ITGAEP38570 1179 aa15.89■□□□□ 0.13
RFX3-211ENST00000458034 SNAPC4Q5SXM2 1469 aa15.89■□□□□ 0.13
RFX3-211ENST00000458034 TARBP1Q13395 1621 aaKnown RBP15.88■□□□□ 0.13
RFX3-211ENST00000458034 P3H3Q8IVL6 736 aa15.88■□□□□ 0.13
RFX3-211ENST00000458034 MIER1Q8N108 512 aa15.88■□□□□ 0.13
RFX3-211ENST00000458034 ATP1B4Q9UN42 357 aaPredicted RBP15.87■□□□□ 0.13
RFX3-211ENST00000458034 MAPKBP1O60336 1514 aa15.87■□□□□ 0.13
RFX3-211ENST00000458034 FAM50AQ14320 339 aaKnown RBP15.86■□□□□ 0.13
RFX3-211ENST00000458034 SUPT6HQ7KZ85 1726 aaKnown RBP15.85■□□□□ 0.13
RFX3-211ENST00000458034 EHBP1L1Q8N3D4 1523 aa15.85■□□□□ 0.13
RFX3-211ENST00000458034 GTF3C3Q9Y5Q9 886 aa15.85■□□□□ 0.13
RFX3-211ENST00000458034 TDRD9Q8NDG6 1382 aaKnown RBP15.83■□□□□ 0.12
RFX3-211ENST00000458034 GRIN2BQ13224 1484 aa15.83■□□□□ 0.12
RFX3-211ENST00000458034 LRRIQ1Q96JM4 1722 aa15.82■□□□□ 0.12
RFX3-211ENST00000458034 MTUS2Q5JR59 1369 aa15.82■□□□□ 0.12
RFX3-211ENST00000458034 FGD6Q6ZV73 1430 aa15.82■□□□□ 0.12
RFX3-211ENST00000458034 CCDC18Q5T9S5 1454 aa15.82■□□□□ 0.12
RFX3-211ENST00000458034 TIMELESSQ9UNS1 1208 aa15.81■□□□□ 0.12
RFX3-211ENST00000458034 HECW1Q76N89 1606 aa15.8■□□□□ 0.12
RFX3-211ENST00000458034 ADAMTS12P58397 1594 aa15.79■□□□□ 0.12
RFX3-211ENST00000458034 MRC2Q9UBG0 1479 aa15.79■□□□□ 0.12
RFX3-211ENST00000458034 YTHDC1Q96MU7 727 aaKnown RBP15.78■□□□□ 0.12
RFX3-211ENST00000458034 IQGAP2Q13576 1575 aa15.78■□□□□ 0.12
RFX3-211ENST00000458034 NCOA2Q15596 1464 aa15.75■□□□□ 0.11
RFX3-211ENST00000458034 MYOM3Q5VTT5 1437 aa15.75■□□□□ 0.11
RFX3-211ENST00000458034 UGGT2Q9NYU1 1516 aa15.73■□□□□ 0.11
RFX3-211ENST00000458034 PTPN23Q9H3S7 1636 aa15.72■□□□□ 0.11
RFX3-211ENST00000458034 HFM1A2PYH4 1435 aa15.71■□□□□ 0.11
RFX3-211ENST00000458034 ARHGEF11O15085 1522 aa15.71■□□□□ 0.11
RFX3-211ENST00000458034 IFT140Q96RY7 1462 aa15.71■□□□□ 0.1
RFX3-211ENST00000458034 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.69■□□□□ 0.1
RFX3-211ENST00000458034 GCC2Q8IWJ2 1684 aa15.69■□□□□ 0.1
RFX3-211ENST00000458034 UACAQ9BZF9 1416 aa15.68■□□□□ 0.1
RFX3-211ENST00000458034 TCOF1Q13428 1488 aaKnown RBP15.68■□□□□ 0.1
RFX3-211ENST00000458034 WDR62O43379 1518 aa15.68■□□□□ 0.1
RFX3-211ENST00000458034 AKNAQ7Z591 1439 aa15.64■□□□□ 0.09
RFX3-211ENST00000458034 EPRSP07814 1512 aaKnown RBP15.63■□□□□ 0.09
RFX3-211ENST00000458034 MIA2Q96PC5 1412 aa15.62■□□□□ 0.09
RFX3-211ENST00000458034 MAGI3Q5TCQ9 1506 aa15.62■□□□□ 0.09
RFX3-211ENST00000458034 TONSLQ96HA7 1378 aa15.62■□□□□ 0.09
RFX3-211ENST00000458034 NAIPQ13075 1403 aa15.61■□□□□ 0.09
RFX3-211ENST00000458034 SIN3AQ96ST3 1273 aa15.61■□□□□ 0.09
RFX3-211ENST00000458034 KIAA0556O60303 1618 aa15.6■□□□□ 0.09
RFX3-211ENST00000458034 PTPRKQ15262 1439 aa15.6■□□□□ 0.09
RFX3-211ENST00000458034 KIAA0586Q9BVV6 1533 aa15.59■□□□□ 0.09
RFX3-211ENST00000458034 PPP1R15AO75807 674 aaPredicted RBP15.58■□□□□ 0.08
RFX3-211ENST00000458034 EIF4G3O43432 1585 aaKnown RBP15.57■□□□□ 0.08
RFX3-211ENST00000458034 NCBP3Q53F19 620 aaKnown RBP15.56■□□□□ 0.08
RFX3-211ENST00000458034 RAPGEF6Q8TEU7 1601 aa15.56■□□□□ 0.08
RFX3-211ENST00000458034 CDK13Q14004 1512 aaKnown RBP15.55■□□□□ 0.08
RFX3-211ENST00000458034 GRIN2AQ12879 1464 aa15.53■□□□□ 0.08
RFX3-211ENST00000458034 MAGI1Q96QZ7 1491 aaPredicted RBP15.52■□□□□ 0.08
RFX3-211ENST00000458034 ZNF608Q9ULD9 1512 aaPredicted RBP15.52■□□□□ 0.07
RFX3-211ENST00000458034 ITSN2Q9NZM3 1697 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms