RNA–Protein interactions for RNA: ENST00000457356.8

MSC-AS1-201, MSC antisense RNA 1, humanhuman

TSL 1 (best) BASIC

Gene MSC-AS1, Length 4,220 nt, Biotype antisense RNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSC-AS1-201ENST00000457356 NESP48681 1621 aa13.56□□□□□ -0.24
MSC-AS1-201ENST00000457356 CARMIL1Q5VZK9 1371 aa13.56□□□□□ -0.24
MSC-AS1-201ENST00000457356 ARID4BQ4LE39 1312 aaPredicted RBP13.53□□□□□ -0.24
MSC-AS1-201ENST00000457356 NPM2Q86SE8 214 aaKnown RBP13.51□□□□□ -0.25
MSC-AS1-201ENST00000457356 SLC4A1APQ9BWU0 796 aaKnown RBP13.5□□□□□ -0.25
MSC-AS1-201ENST00000457356 MTUS2Q5JR59 1369 aa13.49□□□□□ -0.25
MSC-AS1-201ENST00000457356 MIER1Q8N108 512 aa13.49□□□□□ -0.25
MSC-AS1-201ENST00000457356 STAG3Q9UJ98 1225 aa13.48□□□□□ -0.25
MSC-AS1-201ENST00000457356 ABCC8Q09428 1581 aa13.48□□□□□ -0.25
MSC-AS1-201ENST00000457356 EEA1Q15075 1411 aa13.48□□□□□ -0.25
MSC-AS1-201ENST00000457356 TSPY4P0CV99 314 aa13.48□□□□□ -0.25
MSC-AS1-201ENST00000457356 TSPY10P0CW01 314 aa13.48□□□□□ -0.25
MSC-AS1-201ENST00000457356 ANP32AP39687 249 aaKnown RBP13.47□□□□□ -0.25
MSC-AS1-201ENST00000457356 JPH4Q96JJ6 628 aa13.46□□□□□ -0.26
MSC-AS1-201ENST00000457356 NBR1Q14596 966 aa13.45□□□□□ -0.26
MSC-AS1-201ENST00000457356 ZNF326Q5BKZ1 582 aaKnown RBP13.45□□□□□ -0.26
MSC-AS1-201ENST00000457356 CARMIL2Q6F5E8 1435 aa13.44□□□□□ -0.26
MSC-AS1-201ENST00000457356 CHGAP10645 457 aaKnown RBP13.44□□□□□ -0.26
MSC-AS1-201ENST00000457356 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.43□□□□□ -0.26
MSC-AS1-201ENST00000457356 CLIP1P30622 1438 aa13.42□□□□□ -0.26
MSC-AS1-201ENST00000457356 CHIC2Q9UKJ5 165 aa13.41□□□□□ -0.26
MSC-AS1-201ENST00000457356 HMGXB3Q12766 1538 aa13.4□□□□□ -0.26
MSC-AS1-201ENST00000457356 DDX10Q13206 875 aaKnown RBP13.4□□□□□ -0.26
MSC-AS1-201ENST00000457356 GOLGA3Q08378 1498 aa13.38□□□□□ -0.27
MSC-AS1-201ENST00000457356 MRC2Q9UBG0 1479 aa13.38□□□□□ -0.27
MSC-AS1-201ENST00000457356 AQRO60306 1485 aaKnown RBP eCLIP13.38□□□□□ -0.27
MSC-AS1-201ENST00000457356 HNRNPUQ00839 825 aaKnown RBP eCLIP13.37□□□□□ -0.27
MSC-AS1-201ENST00000457356 RAD54L2Q9Y4B4 1467 aa13.37□□□□□ -0.27
MSC-AS1-201ENST00000457356 CFDP1Q9UEE9 299 aaPredicted RBP13.36□□□□□ -0.27
MSC-AS1-201ENST00000457356 UNC13AQ9UPW8 1703 aa13.36□□□□□ -0.27
MSC-AS1-201ENST00000457356 CFTRP13569 1480 aa13.35□□□□□ -0.27
MSC-AS1-201ENST00000457356 FGD5Q6ZNL6 1462 aa13.35□□□□□ -0.27
MSC-AS1-201ENST00000457356 IRX6P78412 446 aaPredicted RBP13.34□□□□□ -0.27
MSC-AS1-201ENST00000457356 MLECQ14165 292 aa13.33□□□□□ -0.28
MSC-AS1-201ENST00000457356 TSHZ2Q9NRE2 1034 aa13.33□□□□□ -0.28
MSC-AS1-201ENST00000457356 SUPT16HQ9Y5B9 1047 aaKnown RBP13.32□□□□□ -0.28
MSC-AS1-201ENST00000457356 GAPVD1Q14C86 1478 aa13.32□□□□□ -0.28
MSC-AS1-201ENST00000457356 FAM9BQ8IZU0 186 aa13.3□□□□□ -0.28
MSC-AS1-201ENST00000457356 RTN4Q9NQC3 1192 aaKnown RBP13.28□□□□□ -0.28
MSC-AS1-201ENST00000457356 ZBTB47Q9UFB7 747 aaPredicted RBP13.28□□□□□ -0.28
MSC-AS1-201ENST00000457356 SALL2Q9Y467 1007 aaPredicted RBP13.28□□□□□ -0.28
MSC-AS1-201ENST00000457356 CCDC136Q96JN2 1154 aa13.26□□□□□ -0.29
MSC-AS1-201ENST00000457356 ARXQ96QS3 562 aa13.26□□□□□ -0.29
MSC-AS1-201ENST00000457356 PTPRGP23470 1445 aa13.25□□□□□ -0.29
MSC-AS1-201ENST00000457356 HIRIP3Q9BW71 556 aaPredicted RBP13.25□□□□□ -0.29
MSC-AS1-201ENST00000457356 SENP3Q9H4L4 574 aaPredicted RBP13.24□□□□□ -0.29
MSC-AS1-201ENST00000457356 IFT140Q96RY7 1462 aa13.24□□□□□ -0.29
MSC-AS1-201ENST00000457356 LAMC3Q9Y6N6 1575 aa13.24□□□□□ -0.29
MSC-AS1-201ENST00000457356 CANXP27824 592 aaKnown RBP13.23□□□□□ -0.29
MSC-AS1-201ENST00000457356 RAPGEF2Q9Y4G8 1499 aa13.23□□□□□ -0.29
MSC-AS1-201ENST00000457356 CEP162Q5TB80 1403 aa13.23□□□□□ -0.29
MSC-AS1-201ENST00000457356 FAM69CQ0P6D2 419 aa13.22□□□□□ -0.29
MSC-AS1-201ENST00000457356 GRIN2BQ13224 1484 aa13.21□□□□□ -0.29
MSC-AS1-201ENST00000457356 TOPBP1Q92547 1522 aa13.21□□□□□ -0.3
MSC-AS1-201ENST00000457356 RRP7BPQ9NSQ0 103 aa13.21□□□□□ -0.3
MSC-AS1-201ENST00000457356 TNIKQ9UKE5 1360 aa13.21□□□□□ -0.3
MSC-AS1-201ENST00000457356 AEBP2Q6ZN18 517 aaPredicted RBP13.2□□□□□ -0.3
MSC-AS1-201ENST00000457356 ANO8Q9HCE9 1232 aaPredicted RBP13.2□□□□□ -0.3
MSC-AS1-201ENST00000457356 PPP1R15AO75807 674 aaPredicted RBP13.19□□□□□ -0.3
MSC-AS1-201ENST00000457356 CCNB3Q8WWL7 1395 aa13.19□□□□□ -0.3
MSC-AS1-201ENST00000457356 EFCAB2Q5VUJ9 269 aa13.19□□□□□ -0.3
MSC-AS1-201ENST00000457356 FHAD1B1AJZ9 1412 aa13.19□□□□□ -0.3
MSC-AS1-201ENST00000457356 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.18□□□□□ -0.3
MSC-AS1-201ENST00000457356 GLIPR1L2Q4G1C9 344 aa13.17□□□□□ -0.3
MSC-AS1-201ENST00000457356 IGF1RP08069 1367 aa13.16□□□□□ -0.3
MSC-AS1-201ENST00000457356 POLA1P09884 1462 aaPredicted RBP13.15□□□□□ -0.3
MSC-AS1-201ENST00000457356 GGT6Q6P531 493 aa13.15□□□□□ -0.3
MSC-AS1-201ENST00000457356 C14orf37Q86TY3 774 aa13.14□□□□□ -0.31
MSC-AS1-201ENST00000457356 RBM19Q9Y4C8 960 aaKnown RBP13.14□□□□□ -0.31
MSC-AS1-201ENST00000457356 SENP3-EIF4A1A0A087X0R7 540 aa13.12□□□□□ -0.31
MSC-AS1-201ENST00000457356 FHOD3Q2V2M9 1422 aa13.11□□□□□ -0.31
MSC-AS1-201ENST00000457356 DEKP35659 375 aaKnown RBP13.11□□□□□ -0.31
MSC-AS1-201ENST00000457356 FMN1Q68DA7 1419 aa13.11□□□□□ -0.31
MSC-AS1-201ENST00000457356 SNAPC4Q5SXM2 1469 aa13.1□□□□□ -0.31
MSC-AS1-201ENST00000457356 HSP90AA1P07900 732 aaKnown RBP13.1□□□□□ -0.31
MSC-AS1-201ENST00000457356 RUSC2Q8N2Y8 1516 aa13.09□□□□□ -0.31
MSC-AS1-201ENST00000457356 MRS2Q9HD23 443 aa13.09□□□□□ -0.31
MSC-AS1-201ENST00000457356 ANP32BQ92688 251 aaKnown RBP13.09□□□□□ -0.31
MSC-AS1-201ENST00000457356 PRG4Q92954 1404 aaPredicted RBP13.08□□□□□ -0.32
MSC-AS1-201ENST00000457356 TONSLQ96HA7 1378 aa13.07□□□□□ -0.32
MSC-AS1-201ENST00000457356 DNMBPQ6XZF7 1577 aa13.06□□□□□ -0.32
MSC-AS1-201ENST00000457356 TMC1Q8TDI8 760 aa13.05□□□□□ -0.32
MSC-AS1-201ENST00000457356 KDM2AQ9Y2K7 1162 aa13.05□□□□□ -0.32
MSC-AS1-201ENST00000457356 PEG3Q9GZU2 1588 aa13.03□□□□□ -0.32
MSC-AS1-201ENST00000457356 SLC24A1O60721 1099 aa13.02□□□□□ -0.32
MSC-AS1-201ENST00000457356 RGL3Q3MIN7 710 aa13.02□□□□□ -0.32
MSC-AS1-201ENST00000457356 UPF2Q9HAU5 1272 aaKnown RBP13.02□□□□□ -0.32
MSC-AS1-201ENST00000457356 CUX1P39880 1505 aa13.02□□□□□ -0.32
MSC-AS1-201ENST00000457356 URB2Q14146 1524 aaKnown RBP13.02□□□□□ -0.33
MSC-AS1-201ENST00000457356 PLEKHG5O94827 1062 aa13.01□□□□□ -0.33
MSC-AS1-201ENST00000457356 HNRNPMP52272 730 aaKnown RBP eCLIP13.01□□□□□ -0.33
MSC-AS1-201ENST00000457356 ZNF608Q9ULD9 1512 aaPredicted RBP13□□□□□ -0.33
MSC-AS1-201ENST00000457356 SPAG9O60271 1321 aaKnown RBP13□□□□□ -0.33
MSC-AS1-201ENST00000457356 KIF3BO15066 747 aa12.99□□□□□ -0.33
MSC-AS1-201ENST00000457356 LAS1LQ9Y4W2 734 aaKnown RBP12.97□□□□□ -0.33
MSC-AS1-201ENST00000457356 KANK1Q14678 1352 aa12.97□□□□□ -0.33
MSC-AS1-201ENST00000457356 NEFMP07197 916 aa12.96□□□□□ -0.33
MSC-AS1-201ENST00000457356 SYNJ1O43426 1573 aa12.95□□□□□ -0.34
MSC-AS1-201ENST00000457356 KANK4Q5T7N3 995 aaPredicted RBP12.94□□□□□ -0.34
MSC-AS1-201ENST00000457356 SYNJ2O15056 1496 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms