RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 SHROOM2Q13796 1616 aa38.99■■■■□ 3.83
CBX3-204ENST00000456948 RUSC2Q8N2Y8 1516 aa38.97■■■■□ 3.83
CBX3-204ENST00000456948 KIAA0586Q9BVV6 1533 aa38.97■■■■□ 3.83
CBX3-204ENST00000456948 PRG4Q92954 1404 aaPredicted RBP38.92■■■■□ 3.82
CBX3-204ENST00000456948 RAPGEF2Q9Y4G8 1499 aa38.91■■■■□ 3.82
CBX3-204ENST00000456948 EEA1Q15075 1411 aa38.72■■■■□ 3.79
CBX3-204ENST00000456948 CSRNP3Q8WYN3 585 aa38.72■■■■□ 3.79
CBX3-204ENST00000456948 CHIC1Q5VXU3 224 aa38.69■■■■□ 3.78
CBX3-204ENST00000456948 IQGAP2Q13576 1575 aa38.68■■■■□ 3.78
CBX3-204ENST00000456948 CARMIL2Q6F5E8 1435 aa38.67■■■■□ 3.78
CBX3-204ENST00000456948 PRXQ9BXM0 1461 aa38.65■■■■□ 3.78
CBX3-204ENST00000456948 NPM1P06748 294 aaKnown RBP eCLIP38.51■■■■□ 3.76
CBX3-204ENST00000456948 FAM9AQ8IZU1 332 aaPredicted RBP38.51■■■■□ 3.76
CBX3-204ENST00000456948 PTPRGP23470 1445 aa38.49■■■■□ 3.75
CBX3-204ENST00000456948 TNIKQ9UKE5 1360 aa38.49■■■■□ 3.75
CBX3-204ENST00000456948 CTTNBP2Q8WZ74 1663 aa38.46■■■■□ 3.75
CBX3-204ENST00000456948 UGGT2Q9NYU1 1516 aa38.46■■■■□ 3.75
CBX3-204ENST00000456948 TTBK1Q5TCY1 1321 aaPredicted RBP38.43■■■■□ 3.74
CBX3-204ENST00000456948 DISP1Q96F81 1524 aa38.37■■■■□ 3.73
CBX3-204ENST00000456948 GOLGA3Q08378 1498 aa38.36■■■■□ 3.73
CBX3-204ENST00000456948 ADCY10Q96PN6 1610 aa38.3■■■■□ 3.72
CBX3-204ENST00000456948 KIAA0556O60303 1618 aa38.27■■■■□ 3.72
CBX3-204ENST00000456948 KIF21BO75037 1637 aa38.2■■■■□ 3.71
CBX3-204ENST00000456948 UACAQ9BZF9 1416 aa38.19■■■■□ 3.7
CBX3-204ENST00000456948 KIF13AQ9H1H9 1805 aa38.17■■■■□ 3.7
CBX3-204ENST00000456948 UHRF1BP1LA0JNW5 1464 aa38.14■■■■□ 3.7
CBX3-204ENST00000456948 MAPKBP1O60336 1514 aa38.13■■■■□ 3.69
CBX3-204ENST00000456948 FAM69CQ0P6D2 419 aa38.13■■■■□ 3.69
CBX3-204ENST00000456948 ABCC2Q92887 1545 aa38.1■■■■□ 3.69
CBX3-204ENST00000456948 UBTFP17480 764 aaKnown RBP38.09■■■■□ 3.69
CBX3-204ENST00000456948 ABCC10Q5T3U5 1492 aa38.08■■■■□ 3.69
CBX3-204ENST00000456948 P3H3Q8IVL6 736 aa38.04■■■■□ 3.68
CBX3-204ENST00000456948 RANGAP1P46060 587 aaPredicted RBP38.01■■■■□ 3.68
CBX3-204ENST00000456948 EHMT2Q96KQ7 1210 aa37.99■■■■□ 3.67
CBX3-204ENST00000456948 DIP2BQ9P265 1576 aa37.98■■■■□ 3.67
CBX3-204ENST00000456948 SAMD9Q5K651 1589 aa37.93■■■■□ 3.66
CBX3-204ENST00000456948 KDM5BQ9UGL1 1544 aa37.93■■■■□ 3.66
CBX3-204ENST00000456948 PLB1Q6P1J6 1458 aa37.93■■■■□ 3.66
CBX3-204ENST00000456948 ASXL2Q76L83 1435 aa37.87■■■■□ 3.65
CBX3-204ENST00000456948 ABCA8O94911 1581 aa37.86■■■■□ 3.65
CBX3-204ENST00000456948 EFCAB5A4FU69 1503 aa37.84■■■■□ 3.65
CBX3-204ENST00000456948 TSPOAP1O95153 1857 aa37.82■■■■□ 3.65
CBX3-204ENST00000456948 ZCCHC11Q5TAX3 1644 aaKnown RBP37.8■■■■□ 3.64
CBX3-204ENST00000456948 FHOD3Q2V2M9 1422 aa37.75■■■■□ 3.63
CBX3-204ENST00000456948 GLI2P10070 1586 aa37.67■■■■□ 3.62
CBX3-204ENST00000456948 WDR7Q9Y4E6 1490 aa37.66■■■■□ 3.62
CBX3-204ENST00000456948 RAPGEF6Q8TEU7 1601 aa37.66■■■■□ 3.62
CBX3-204ENST00000456948 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.65■■■■□ 3.62
CBX3-204ENST00000456948 HNRNPUL2Q1KMD3 747 aaKnown RBP37.65■■■■□ 3.62
CBX3-204ENST00000456948 EPRSP07814 1512 aaKnown RBP37.63■■■■□ 3.61
CBX3-204ENST00000456948 ARID3CA6NKF2 412 aa37.63■■■■□ 3.61
CBX3-204ENST00000456948 ATP10BO94823 1461 aa37.6■■■■□ 3.61
CBX3-204ENST00000456948 KDM6BO15054 1643 aa37.59■■■■□ 3.61
CBX3-204ENST00000456948 KCNH8Q96L42 1107 aa37.59■■■■□ 3.61
CBX3-204ENST00000456948 FMN1Q68DA7 1419 aa37.56■■■■□ 3.6
CBX3-204ENST00000456948 AEBP2Q6ZN18 517 aaPredicted RBP37.55■■■■□ 3.6
CBX3-204ENST00000456948 ARHGAP35Q9NRY4 1499 aa37.54■■■■□ 3.6
CBX3-204ENST00000456948 NUP153P49790 1475 aaKnown RBP37.5■■■■□ 3.59
CBX3-204ENST00000456948 PPRC1Q5VV67 1664 aaKnown RBP37.49■■■■□ 3.59
CBX3-204ENST00000456948 MAP3K4Q9Y6R4 1608 aa37.47■■■■□ 3.59
CBX3-204ENST00000456948 ATP1B4Q9UN42 357 aaPredicted RBP37.46■■■■□ 3.59
CBX3-204ENST00000456948 PLEKHD1A6NEE1 506 aa37.45■■■■□ 3.59
CBX3-204ENST00000456948 TEX14Q8IWB6 1497 aa37.45■■■■□ 3.59
CBX3-204ENST00000456948 CD109Q6YHK3 1445 aa37.39■■■■□ 3.58
CBX3-204ENST00000456948 CFAP43Q8NDM7 1665 aa37.36■■■■□ 3.57
CBX3-204ENST00000456948 CLIP1P30622 1438 aa37.35■■■■□ 3.57
CBX3-204ENST00000456948 CDK11AQ9UQ88 783 aaPredicted RBP37.33■■■■□ 3.57
CBX3-204ENST00000456948 HECW1Q76N89 1606 aa37.32■■■■□ 3.56
CBX3-204ENST00000456948 MAGI3Q5TCQ9 1506 aa37.28■■■■□ 3.56
CBX3-204ENST00000456948 COL17A1Q9UMD9 1497 aaPredicted RBP37.22■■■■□ 3.55
CBX3-204ENST00000456948 ABCA9Q8IUA7 1624 aa37.21■■■■□ 3.55
CBX3-204ENST00000456948 CDK13Q14004 1512 aaKnown RBP37.19■■■■□ 3.54
CBX3-204ENST00000456948 CASKIN1Q8WXD9 1431 aa37.18■■■■□ 3.54
CBX3-204ENST00000456948 PHLDB1Q86UU1 1377 aa37.14■■■■□ 3.54
CBX3-204ENST00000456948 LOC105371045A0A1W2PR82 267 aa37.1■■■■□ 3.53
CBX3-204ENST00000456948 CEP162Q5TB80 1403 aa37.1■■■■□ 3.53
CBX3-204ENST00000456948 CCDC18Q5T9S5 1454 aa37.09■■■■□ 3.53
CBX3-204ENST00000456948 FYCO1Q9BQS8 1478 aa37.07■■■■□ 3.52
CBX3-204ENST00000456948 PCF11O94913 1555 aaKnown RBP37.05■■■■□ 3.52
CBX3-204ENST00000456948 KDM4FA0A1W2PPD8 638 aa37.03■■■■□ 3.52
CBX3-204ENST00000456948 NEO1Q92859 1461 aa37.01■■■■□ 3.52
CBX3-204ENST00000456948 TROQ12816 1431 aaPredicted RBP37■■■■□ 3.51
CBX3-204ENST00000456948 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37■■■■□ 3.512e-7■■□□□ 11.6
CBX3-204ENST00000456948 ARAP3Q8WWN8 1544 aa36.97■■■■□ 3.51
CBX3-204ENST00000456948 LRRIQ1Q96JM4 1722 aa36.92■■■■□ 3.5
CBX3-204ENST00000456948 KIF14Q15058 1648 aa36.92■■■■□ 3.5
CBX3-204ENST00000456948 TTC37Q6PGP7 1564 aa36.89■■■■□ 3.5
CBX3-204ENST00000456948 CFAP74Q9C0B2 1584 aa36.89■■■■□ 3.5
CBX3-204ENST00000456948 FANCAO15360 1455 aa36.88■■■■□ 3.5
CBX3-204ENST00000456948 PLCH2O75038 1416 aa36.87■■■■□ 3.49
CBX3-204ENST00000456948 EFCAB2Q5VUJ9 269 aa36.84■■■■□ 3.49
CBX3-204ENST00000456948 AKNAQ7Z591 1439 aa36.84■■■■□ 3.49
CBX3-204ENST00000456948 ADGRL1O94910 1474 aa36.83■■■■□ 3.49
CBX3-204ENST00000456948 RAPGEF3O95398 923 aa36.79■■■■□ 3.48
CBX3-204ENST00000456948 MYO5CQ9NQX4 1742 aa36.79■■■■□ 3.48
CBX3-204ENST00000456948 DENND4BO75064 1496 aaPredicted RBP36.76■■■■□ 3.48
CBX3-204ENST00000456948 MTUS2Q5JR59 1369 aa36.74■■■■□ 3.47
CBX3-204ENST00000456948 ARHGAP5Q13017 1502 aa36.69■■■■□ 3.46
CBX3-204ENST00000456948 VPS8Q8N3P4 1428 aa36.68■■■■□ 3.46
CBX3-204ENST00000456948 SCAPERQ9BY12 1400 aa36.65■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms