RNA–Protein interactions for RNA: ENST00000455548.2

SMPD4-214, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-214ENST00000455548 JPH4Q96JJ6 628 aa27.46■■□□□ 1.99
SMPD4-214ENST00000455548 ERCC6L2Q5T890 1561 aa27.46■■□□□ 1.99
SMPD4-214ENST00000455548 RAPGEF2Q9Y4G8 1499 aa27.43■■□□□ 1.98
SMPD4-214ENST00000455548 PRG4Q92954 1404 aaPredicted RBP27.42■■□□□ 1.98
SMPD4-214ENST00000455548 IQGAP2Q13576 1575 aa27.31■■□□□ 1.96
SMPD4-214ENST00000455548 EEA1Q15075 1411 aa27.3■■□□□ 1.96
SMPD4-214ENST00000455548 PRXQ9BXM0 1461 aa27.29■■□□□ 1.96
SMPD4-214ENST00000455548 CHIC1Q5VXU3 224 aa27.28■■□□□ 1.96
SMPD4-214ENST00000455548 CSRNP3Q8WYN3 585 aa27.24■■□□□ 1.95
SMPD4-214ENST00000455548 CTTNBP2Q8WZ74 1663 aa27.21■■□□□ 1.95
SMPD4-214ENST00000455548 CARMIL2Q6F5E8 1435 aa27.21■■□□□ 1.95
SMPD4-214ENST00000455548 UGGT2Q9NYU1 1516 aa27.16■■□□□ 1.94
SMPD4-214ENST00000455548 TNIKQ9UKE5 1360 aa27.1■■□□□ 1.93
SMPD4-214ENST00000455548 TRHP20396 242 aaPredicted RBP27.1■■□□□ 1.93
SMPD4-214ENST00000455548 DISP1Q96F81 1524 aa27.1■■□□□ 1.93
SMPD4-214ENST00000455548 PTPRGP23470 1445 aa27.08■■□□□ 1.93
SMPD4-214ENST00000455548 FAM9AQ8IZU1 332 aaPredicted RBP27.07■■□□□ 1.92
SMPD4-214ENST00000455548 KIAA0556O60303 1618 aa27.04■■□□□ 1.92
SMPD4-214ENST00000455548 ADCY10Q96PN6 1610 aa27.03■■□□□ 1.92
SMPD4-214ENST00000455548 GOLGA3Q08378 1498 aa27.02■■□□□ 1.92
SMPD4-214ENST00000455548 KIF21BO75037 1637 aa27.01■■□□□ 1.91
SMPD4-214ENST00000455548 NPM1P06748 294 aaKnown RBP eCLIP26.99■■□□□ 1.91
SMPD4-214ENST00000455548 TTBK1Q5TCY1 1321 aaPredicted RBP26.98■■□□□ 1.91
SMPD4-214ENST00000455548 UACAQ9BZF9 1416 aa26.9■■□□□ 1.9
SMPD4-214ENST00000455548 UHRF1BP1LA0JNW5 1464 aa26.9■■□□□ 1.9
SMPD4-214ENST00000455548 MAPKBP1O60336 1514 aa26.9■■□□□ 1.9
SMPD4-214ENST00000455548 ABCC2Q92887 1545 aa26.87■■□□□ 1.89
SMPD4-214ENST00000455548 SAMD9Q5K651 1589 aa26.83■■□□□ 1.89
SMPD4-214ENST00000455548 KIF13AQ9H1H9 1805 aa26.81■■□□□ 1.88
SMPD4-214ENST00000455548 ABCC10Q5T3U5 1492 aa26.78■■□□□ 1.88
SMPD4-214ENST00000455548 KDM5BQ9UGL1 1544 aa26.76■■□□□ 1.87
SMPD4-214ENST00000455548 PLB1Q6P1J6 1458 aa26.76■■□□□ 1.87
SMPD4-214ENST00000455548 ABCA8O94911 1581 aa26.75■■□□□ 1.87
SMPD4-214ENST00000455548 UBTFP17480 764 aaKnown RBP26.75■■□□□ 1.87
SMPD4-214ENST00000455548 P3H3Q8IVL6 736 aa26.75■■□□□ 1.87
SMPD4-214ENST00000455548 DIP2BQ9P265 1576 aa26.74■■□□□ 1.87
SMPD4-214ENST00000455548 ZCCHC11Q5TAX3 1644 aaKnown RBP26.72■■□□□ 1.87
SMPD4-214ENST00000455548 EFCAB5A4FU69 1503 aa26.71■■□□□ 1.87
SMPD4-214ENST00000455548 FAM69CQ0P6D2 419 aa26.71■■□□□ 1.87
SMPD4-214ENST00000455548 EHMT2Q96KQ7 1210 aa26.71■■□□□ 1.87
SMPD4-214ENST00000455548 RANGAP1P46060 587 aaPredicted RBP26.7■■□□□ 1.86
SMPD4-214ENST00000455548 ASXL2Q76L83 1435 aa26.7■■□□□ 1.86
SMPD4-214ENST00000455548 FHOD3Q2V2M9 1422 aa26.63■■□□□ 1.85
SMPD4-214ENST00000455548 RAPGEF6Q8TEU7 1601 aa26.61■■□□□ 1.85
SMPD4-214ENST00000455548 GLI2P10070 1586 aa26.58■■□□□ 1.85
SMPD4-214ENST00000455548 WDR7Q9Y4E6 1490 aa26.55■■□□□ 1.84
SMPD4-214ENST00000455548 EPRSP07814 1512 aaKnown RBP26.55■■□□□ 1.84
SMPD4-214ENST00000455548 TSPOAP1O95153 1857 aa26.53■■□□□ 1.84
SMPD4-214ENST00000455548 ATP10BO94823 1461 aa26.52■■□□□ 1.84
SMPD4-214ENST00000455548 ARHGAP35Q9NRY4 1499 aa26.5■■□□□ 1.83
SMPD4-214ENST00000455548 NUP153P49790 1475 aaKnown RBP26.47■■□□□ 1.83
SMPD4-214ENST00000455548 ARID3CA6NKF2 412 aa26.46■■□□□ 1.83
SMPD4-214ENST00000455548 FMN1Q68DA7 1419 aa26.46■■□□□ 1.83
SMPD4-214ENST00000455548 MAP3K4Q9Y6R4 1608 aa26.44■■□□□ 1.82
SMPD4-214ENST00000455548 PPRC1Q5VV67 1664 aaKnown RBP26.41■■□□□ 1.82
SMPD4-214ENST00000455548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.4■■□□□ 1.82
SMPD4-214ENST00000455548 HNRNPUL2Q1KMD3 747 aaKnown RBP26.4■■□□□ 1.82
SMPD4-214ENST00000455548 KCNH8Q96L42 1107 aa26.4■■□□□ 1.82
SMPD4-214ENST00000455548 CFAP43Q8NDM7 1665 aa26.38■■□□□ 1.81
SMPD4-214ENST00000455548 TEX14Q8IWB6 1497 aa26.36■■□□□ 1.81
SMPD4-214ENST00000455548 KDM6BO15054 1643 aa26.36■■□□□ 1.81
SMPD4-214ENST00000455548 HECW1Q76N89 1606 aa26.35■■□□□ 1.81
SMPD4-214ENST00000455548 CLIP1P30622 1438 aa26.33■■□□□ 1.81
SMPD4-214ENST00000455548 CD109Q6YHK3 1445 aa26.32■■□□□ 1.8
SMPD4-214ENST00000455548 PLEKHD1A6NEE1 506 aa26.29■■□□□ 1.8
SMPD4-214ENST00000455548 MAGI3Q5TCQ9 1506 aa26.29■■□□□ 1.8
SMPD4-214ENST00000455548 ABCA9Q8IUA7 1624 aa26.28■■□□□ 1.8
SMPD4-214ENST00000455548 ATP1B4Q9UN42 357 aaPredicted RBP26.28■■□□□ 1.8
SMPD4-214ENST00000455548 CDK13Q14004 1512 aaKnown RBP26.28■■□□□ 1.8
SMPD4-214ENST00000455548 CASKIN1Q8WXD9 1431 aa26.22■■□□□ 1.79
SMPD4-214ENST00000455548 PCF11O94913 1555 aaKnown RBP26.2■■□□□ 1.79
SMPD4-214ENST00000455548 CDK11AQ9UQ88 783 aaPredicted RBP26.19■■□□□ 1.78
SMPD4-214ENST00000455548 CEP162Q5TB80 1403 aa26.18■■□□□ 1.78
SMPD4-214ENST00000455548 FYCO1Q9BQS8 1478 aa26.17■■□□□ 1.78
SMPD4-214ENST00000455548 LRRIQ1Q96JM4 1722 aa26.17■■□□□ 1.78
SMPD4-214ENST00000455548 CCDC18Q5T9S5 1454 aa26.15■■□□□ 1.78
SMPD4-214ENST00000455548 COL17A1Q9UMD9 1497 aaPredicted RBP26.13■■□□□ 1.77
SMPD4-214ENST00000455548 LOC105371045A0A1W2PR82 267 aa26.13■■□□□ 1.77
SMPD4-214ENST00000455548 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.12■■□□□ 1.77
SMPD4-214ENST00000455548 PHLDB1Q86UU1 1377 aa26.11■■□□□ 1.77
SMPD4-214ENST00000455548 TTC37Q6PGP7 1564 aa26.09■■□□□ 1.77
SMPD4-214ENST00000455548 TROQ12816 1431 aaPredicted RBP26.09■■□□□ 1.77
SMPD4-214ENST00000455548 NEO1Q92859 1461 aa26.09■■□□□ 1.77
SMPD4-214ENST00000455548 ARAP3Q8WWN8 1544 aa26.07■■□□□ 1.76
SMPD4-214ENST00000455548 KIF14Q15058 1648 aa26.06■■□□□ 1.76
SMPD4-214ENST00000455548 CFAP74Q9C0B2 1584 aa26.04■■□□□ 1.76
SMPD4-214ENST00000455548 MYO5CQ9NQX4 1742 aa26■■□□□ 1.75
SMPD4-214ENST00000455548 FANCAO15360 1455 aa25.99■■□□□ 1.75
SMPD4-214ENST00000455548 PLCH2O75038 1416 aa25.97■■□□□ 1.75
SMPD4-214ENST00000455548 AKNAQ7Z591 1439 aa25.95■■□□□ 1.74
SMPD4-214ENST00000455548 EFCAB2Q5VUJ9 269 aa25.89■■□□□ 1.74
SMPD4-214ENST00000455548 DENND4BO75064 1496 aaPredicted RBP25.89■■□□□ 1.73
SMPD4-214ENST00000455548 VPS8Q8N3P4 1428 aa25.88■■□□□ 1.73
SMPD4-214ENST00000455548 RAPGEF3O95398 923 aa25.88■■□□□ 1.73
SMPD4-214ENST00000455548 FRMPD1Q5SYB0 1578 aa25.86■■□□□ 1.73
SMPD4-214ENST00000455548 MTUS2Q5JR59 1369 aa25.86■■□□□ 1.73
SMPD4-214ENST00000455548 ARHGAP5Q13017 1502 aa25.86■■□□□ 1.73
SMPD4-214ENST00000455548 RICTORQ6R327 1708 aa25.85■■□□□ 1.73
SMPD4-214ENST00000455548 ADGRL1O94910 1474 aa25.85■■□□□ 1.73
SMPD4-214ENST00000455548 PREX2Q70Z35 1606 aa25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms