RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PRG4Q92954 1404 aaPredicted RBP33.39■■■□□ 2.94
USP40-207ENST00000450940 CARMIL1Q5VZK9 1371 aa33.36■■■□□ 2.93
USP40-207ENST00000450940 KIAA0586Q9BVV6 1533 aa33.36■■■□□ 2.93
USP40-207ENST00000450940 TRHP20396 242 aaPredicted RBP33.34■■■□□ 2.93
USP40-207ENST00000450940 RAPGEF2Q9Y4G8 1499 aa33.12■■■□□ 2.89
USP40-207ENST00000450940 IQGAP2Q13576 1575 aa33.07■■■□□ 2.88
USP40-207ENST00000450940 CARMIL2Q6F5E8 1435 aa32.98■■■□□ 2.87
USP40-207ENST00000450940 ADCY10Q96PN6 1610 aa32.98■■■□□ 2.87
USP40-207ENST00000450940 PTPRGP23470 1445 aa32.94■■■□□ 2.86
USP40-207ENST00000450940 TNIKQ9UKE5 1360 aa32.92■■■□□ 2.86
USP40-207ENST00000450940 PRXQ9BXM0 1461 aa32.92■■■□□ 2.86
USP40-207ENST00000450940 UGGT2Q9NYU1 1516 aa32.92■■■□□ 2.86
USP40-207ENST00000450940 DISP1Q96F81 1524 aa32.9■■■□□ 2.86
USP40-207ENST00000450940 NPM1P06748 294 aaKnown RBP eCLIP32.89■■■□□ 2.86
USP40-207ENST00000450940 KIF13AQ9H1H9 1805 aa32.88■■■□□ 2.85
USP40-207ENST00000450940 MAPKBP1O60336 1514 aa32.88■■■□□ 2.85
USP40-207ENST00000450940 CTTNBP2Q8WZ74 1663 aa32.85■■■□□ 2.85
USP40-207ENST00000450940 ABCC10Q5T3U5 1492 aa32.78■■■□□ 2.84
USP40-207ENST00000450940 KIAA0556O60303 1618 aa32.77■■■□□ 2.84
USP40-207ENST00000450940 UHRF1BP1LA0JNW5 1464 aa32.75■■■□□ 2.83
USP40-207ENST00000450940 CSRNP3Q8WYN3 585 aa32.74■■■□□ 2.83
USP40-207ENST00000450940 ABCC2Q92887 1545 aa32.72■■■□□ 2.83
USP40-207ENST00000450940 TTBK1Q5TCY1 1321 aaPredicted RBP32.72■■■□□ 2.83
USP40-207ENST00000450940 DIP2BQ9P265 1576 aa32.7■■■□□ 2.83
USP40-207ENST00000450940 EEA1Q15075 1411 aa32.7■■■□□ 2.83
USP40-207ENST00000450940 UACAQ9BZF9 1416 aa32.7■■■□□ 2.83
USP40-207ENST00000450940 FAM69CQ0P6D2 419 aa32.68■■■□□ 2.82
USP40-207ENST00000450940 GOLGA3Q08378 1498 aa32.66■■■□□ 2.82
USP40-207ENST00000450940 KDM5BQ9UGL1 1544 aa32.59■■■□□ 2.81
USP40-207ENST00000450940 PLB1Q6P1J6 1458 aa32.55■■■□□ 2.8
USP40-207ENST00000450940 ASXL2Q76L83 1435 aa32.54■■■□□ 2.8
USP40-207ENST00000450940 CHIC1Q5VXU3 224 aa32.5■■■□□ 2.79
USP40-207ENST00000450940 ZCCHC11Q5TAX3 1644 aaKnown RBP32.48■■■□□ 2.79
USP40-207ENST00000450940 ABCA8O94911 1581 aa32.47■■■□□ 2.79
USP40-207ENST00000450940 GLI2P10070 1586 aa32.47■■■□□ 2.79
USP40-207ENST00000450940 TSPOAP1O95153 1857 aa32.43■■■□□ 2.78
USP40-207ENST00000450940 SAMD9Q5K651 1589 aa32.42■■■□□ 2.78
USP40-207ENST00000450940 KIF21BO75037 1637 aa32.41■■■□□ 2.78
USP40-207ENST00000450940 FAM9AQ8IZU1 332 aaPredicted RBP32.41■■■□□ 2.78
USP40-207ENST00000450940 EPRSP07814 1512 aaKnown RBP32.36■■■□□ 2.77
USP40-207ENST00000450940 PPRC1Q5VV67 1664 aaKnown RBP32.33■■■□□ 2.77
USP40-207ENST00000450940 P3H3Q8IVL6 736 aa32.32■■■□□ 2.76
USP40-207ENST00000450940 WDR7Q9Y4E6 1490 aa32.3■■■□□ 2.76
USP40-207ENST00000450940 MAP3K4Q9Y6R4 1608 aa32.29■■■□□ 2.76
USP40-207ENST00000450940 KDM6BO15054 1643 aa32.29■■■□□ 2.76
USP40-207ENST00000450940 ATP10BO94823 1461 aa32.19■■■□□ 2.74
USP40-207ENST00000450940 RAPGEF6Q8TEU7 1601 aa32.18■■■□□ 2.74
USP40-207ENST00000450940 EFCAB5A4FU69 1503 aa32.16■■■□□ 2.74
USP40-207ENST00000450940 TEX14Q8IWB6 1497 aa32.14■■■□□ 2.74
USP40-207ENST00000450940 FHOD3Q2V2M9 1422 aa32.13■■■□□ 2.73
USP40-207ENST00000450940 CFAP43Q8NDM7 1665 aa32.12■■■□□ 2.73
USP40-207ENST00000450940 RANGAP1P46060 587 aaPredicted RBP32.12■■■□□ 2.73
USP40-207ENST00000450940 KCNH8Q96L42 1107 aa32.09■■■□□ 2.73
USP40-207ENST00000450940 MAGI3Q5TCQ9 1506 aa32.06■■■□□ 2.72
USP40-207ENST00000450940 NUP153P49790 1475 aaKnown RBP32.06■■■□□ 2.72
USP40-207ENST00000450940 UBTFP17480 764 aaKnown RBP32.06■■■□□ 2.72
USP40-207ENST00000450940 CD109Q6YHK3 1445 aa32.06■■■□□ 2.72
USP40-207ENST00000450940 ARID3CA6NKF2 412 aa32.05■■■□□ 2.72
USP40-207ENST00000450940 COL17A1Q9UMD9 1497 aaPredicted RBP32.04■■■□□ 2.72
USP40-207ENST00000450940 AEBP2Q6ZN18 517 aaPredicted RBP32.01■■■□□ 2.71
USP40-207ENST00000450940 EHMT2Q96KQ7 1210 aa31.97■■■□□ 2.71
USP40-207ENST00000450940 ABCA9Q8IUA7 1624 aa31.96■■■□□ 2.71
USP40-207ENST00000450940 ARHGAP35Q9NRY4 1499 aa31.92■■■□□ 2.7
USP40-207ENST00000450940 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.9■■■□□ 2.7
USP40-207ENST00000450940 HNRNPUL2Q1KMD3 747 aaKnown RBP31.9■■■□□ 2.7
USP40-207ENST00000450940 FMN1Q68DA7 1419 aa31.86■■■□□ 2.69
USP40-207ENST00000450940 PLEKHD1A6NEE1 506 aa31.83■■■□□ 2.69
USP40-207ENST00000450940 ARAP3Q8WWN8 1544 aa31.81■■■□□ 2.68
USP40-207ENST00000450940 PHLDB1Q86UU1 1377 aa31.8■■■□□ 2.68
USP40-207ENST00000450940 KDM4FA0A1W2PPD8 638 aa31.79■■■□□ 2.68
USP40-207ENST00000450940 HECW1Q76N89 1606 aa31.75■■■□□ 2.67
USP40-207ENST00000450940 CDK13Q14004 1512 aaKnown RBP31.75■■■□□ 2.67
USP40-207ENST00000450940 NEO1Q92859 1461 aa31.74■■■□□ 2.67
USP40-207ENST00000450940 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.7■■■□□ 2.66
USP40-207ENST00000450940 TTC37Q6PGP7 1564 aa31.63■■■□□ 2.65
USP40-207ENST00000450940 ADGRL1O94910 1474 aa31.62■■■□□ 2.65
USP40-207ENST00000450940 LRRIQ1Q96JM4 1722 aa31.62■■■□□ 2.65
USP40-207ENST00000450940 ATP1B4Q9UN42 357 aaPredicted RBP31.62■■■□□ 2.65
USP40-207ENST00000450940 CDK11AQ9UQ88 783 aaPredicted RBP31.59■■■□□ 2.65
USP40-207ENST00000450940 CASKIN1Q8WXD9 1431 aa31.58■■■□□ 2.65
USP40-207ENST00000450940 CFAP74Q9C0B2 1584 aa31.57■■■□□ 2.64
USP40-207ENST00000450940 FANCAO15360 1455 aa31.55■■■□□ 2.64
USP40-207ENST00000450940 RAPGEF3O95398 923 aa31.55■■■□□ 2.64
USP40-207ENST00000450940 FRMPD1Q5SYB0 1578 aa31.55■■■□□ 2.64
USP40-207ENST00000450940 CLIP1P30622 1438 aa31.54■■■□□ 2.64
USP40-207ENST00000450940 AKNAQ7Z591 1439 aa31.54■■■□□ 2.64
USP40-207ENST00000450940 PCF11O94913 1555 aaKnown RBP31.52■■■□□ 2.64
USP40-207ENST00000450940 PLCH2O75038 1416 aa31.51■■■□□ 2.64
USP40-207ENST00000450940 TROQ12816 1431 aaPredicted RBP31.51■■■□□ 2.64
USP40-207ENST00000450940 RICTORQ6R327 1708 aa31.49■■■□□ 2.63
USP40-207ENST00000450940 DENND4BO75064 1496 aaPredicted RBP31.48■■■□□ 2.63
USP40-207ENST00000450940 CCDC18Q5T9S5 1454 aa31.48■■■□□ 2.63
USP40-207ENST00000450940 KIF14Q15058 1648 aa31.47■■■□□ 2.63
USP40-207ENST00000450940 MYO5CQ9NQX4 1742 aa31.46■■■□□ 2.63
USP40-207ENST00000450940 FYCO1Q9BQS8 1478 aa31.46■■■□□ 2.63
USP40-207ENST00000450940 EFCAB2Q5VUJ9 269 aa31.37■■■□□ 2.61
USP40-207ENST00000450940 ZMYM4Q5VZL5 1548 aa31.37■■■□□ 2.61
USP40-207ENST00000450940 ARHGEF40Q8TER5 1519 aa31.34■■■□□ 2.61
USP40-207ENST00000450940 SCAPERQ9BY12 1400 aa31.33■■■□□ 2.61
USP40-207ENST00000450940 MAGI2Q86UL8 1455 aa31.3■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms