RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 PRXQ9BXM0 1461 aa24.19■■□□□ 1.46
COL3A1-203ENST00000450867 KIAA0586Q9BVV6 1533 aa24.18■■□□□ 1.46
COL3A1-203ENST00000450867 ARAP1Q96P48 1450 aa24.13■■□□□ 1.45
COL3A1-203ENST00000450867 ERCC6L2Q5T890 1561 aa24.09■■□□□ 1.45
COL3A1-203ENST00000450867 CTTNBP2Q8WZ74 1663 aa24.08■■□□□ 1.45
COL3A1-203ENST00000450867 IQGAP2Q13576 1575 aa24.08■■□□□ 1.44
COL3A1-203ENST00000450867 CSRNP3Q8WYN3 585 aa24.07■■□□□ 1.44
COL3A1-203ENST00000450867 JPH4Q96JJ6 628 aa24.04■■□□□ 1.44
COL3A1-203ENST00000450867 PRG4Q92954 1404 aaPredicted RBP24.02■■□□□ 1.44
COL3A1-203ENST00000450867 KIF21BO75037 1637 aa24.01■■□□□ 1.43
COL3A1-203ENST00000450867 UGGT2Q9NYU1 1516 aa23.96■■□□□ 1.43
COL3A1-203ENST00000450867 CYB5RLQ6IPT4 315 aa23.94■■□□□ 1.42
COL3A1-203ENST00000450867 DISP1Q96F81 1524 aa23.89■■□□□ 1.41
COL3A1-203ENST00000450867 FAM9AQ8IZU1 332 aaPredicted RBP23.87■■□□□ 1.41
COL3A1-203ENST00000450867 CARMIL2Q6F5E8 1435 aa23.86■■□□□ 1.41
COL3A1-203ENST00000450867 KIAA0556O60303 1618 aa23.85■■□□□ 1.41
COL3A1-203ENST00000450867 GOLGA3Q08378 1498 aa23.8■■□□□ 1.4
COL3A1-203ENST00000450867 TNIKQ9UKE5 1360 aa23.78■■□□□ 1.4
COL3A1-203ENST00000450867 SAMD9Q5K651 1589 aa23.77■■□□□ 1.4
COL3A1-203ENST00000450867 ADCY10Q96PN6 1610 aa23.73■■□□□ 1.39
COL3A1-203ENST00000450867 PTPRGP23470 1445 aa23.73■■□□□ 1.39
COL3A1-203ENST00000450867 UHRF1BP1LA0JNW5 1464 aa23.67■■□□□ 1.38
COL3A1-203ENST00000450867 EFCAB5A4FU69 1503 aa23.65■■□□□ 1.38
COL3A1-203ENST00000450867 ABCC2Q92887 1545 aa23.63■■□□□ 1.37
COL3A1-203ENST00000450867 UACAQ9BZF9 1416 aa23.61■■□□□ 1.37
COL3A1-203ENST00000450867 ABCA8O94911 1581 aa23.6■■□□□ 1.37
COL3A1-203ENST00000450867 MAPKBP1O60336 1514 aa23.59■■□□□ 1.37
COL3A1-203ENST00000450867 UBTFP17480 764 aaKnown RBP23.57■■□□□ 1.36
COL3A1-203ENST00000450867 KDM5BQ9UGL1 1544 aa23.54■■□□□ 1.36
COL3A1-203ENST00000450867 PLB1Q6P1J6 1458 aa23.53■■□□□ 1.36
COL3A1-203ENST00000450867 KIF13AQ9H1H9 1805 aa23.49■■□□□ 1.35
COL3A1-203ENST00000450867 ARHGAP35Q9NRY4 1499 aa23.49■■□□□ 1.35
COL3A1-203ENST00000450867 ZCCHC11Q5TAX3 1644 aaKnown RBP23.49■■□□□ 1.35
COL3A1-203ENST00000450867 TTBK1Q5TCY1 1321 aaPredicted RBP23.49■■□□□ 1.35
COL3A1-203ENST00000450867 FHOD3Q2V2M9 1422 aa23.49■■□□□ 1.35
COL3A1-203ENST00000450867 NPM1P06748 294 aaKnown RBP eCLIP23.47■■□□□ 1.35
COL3A1-203ENST00000450867 EHMT2Q96KQ7 1210 aa23.47■■□□□ 1.35
COL3A1-203ENST00000450867 RAPGEF6Q8TEU7 1601 aa23.47■■□□□ 1.35
COL3A1-203ENST00000450867 P3H3Q8IVL6 736 aa23.45■■□□□ 1.34
COL3A1-203ENST00000450867 DIP2BQ9P265 1576 aa23.43■■□□□ 1.34
COL3A1-203ENST00000450867 ABCC10Q5T3U5 1492 aa23.42■■□□□ 1.34
COL3A1-203ENST00000450867 RANGAP1P46060 587 aaPredicted RBP23.39■■□□□ 1.33
COL3A1-203ENST00000450867 ASXL2Q76L83 1435 aa23.38■■□□□ 1.33
COL3A1-203ENST00000450867 TRHP20396 242 aaPredicted RBP23.37■■□□□ 1.33
COL3A1-203ENST00000450867 NUP153P49790 1475 aaKnown RBP23.36■■□□□ 1.33
COL3A1-203ENST00000450867 FMN1Q68DA7 1419 aa23.36■■□□□ 1.33
COL3A1-203ENST00000450867 GLI2P10070 1586 aa23.34■■□□□ 1.33
COL3A1-203ENST00000450867 CLIP1P30622 1438 aa23.33■■□□□ 1.33
COL3A1-203ENST00000450867 ATP10BO94823 1461 aa23.33■■□□□ 1.33
COL3A1-203ENST00000450867 WDR7Q9Y4E6 1490 aa23.31■■□□□ 1.32
COL3A1-203ENST00000450867 HECW1Q76N89 1606 aa23.3■■□□□ 1.32
COL3A1-203ENST00000450867 EPRSP07814 1512 aaKnown RBP23.28■■□□□ 1.32
COL3A1-203ENST00000450867 CEP162Q5TB80 1403 aa23.26■■□□□ 1.31
COL3A1-203ENST00000450867 LRRIQ1Q96JM4 1722 aa23.24■■□□□ 1.31
COL3A1-203ENST00000450867 MAP3K4Q9Y6R4 1608 aa23.23■■□□□ 1.31
COL3A1-203ENST00000450867 FAM69CQ0P6D2 419 aa23.23■■□□□ 1.31
COL3A1-203ENST00000450867 PCF11O94913 1555 aaKnown RBP23.23■■□□□ 1.31
COL3A1-203ENST00000450867 LOC105371045A0A1W2PR82 267 aa23.21■■□□□ 1.31
COL3A1-203ENST00000450867 CASKIN1Q8WXD9 1431 aa23.21■■□□□ 1.31
COL3A1-203ENST00000450867 PPRC1Q5VV67 1664 aaKnown RBP23.2■■□□□ 1.3
COL3A1-203ENST00000450867 CFAP43Q8NDM7 1665 aa23.2■■□□□ 1.3
COL3A1-203ENST00000450867 FYCO1Q9BQS8 1478 aa23.18■■□□□ 1.3
COL3A1-203ENST00000450867 CDK13Q14004 1512 aaKnown RBP23.18■■□□□ 1.3
COL3A1-203ENST00000450867 TSPOAP1O95153 1857 aa23.17■■□□□ 1.3
COL3A1-203ENST00000450867 ABCA9Q8IUA7 1624 aa23.15■■□□□ 1.3
COL3A1-203ENST00000450867 ARID3CA6NKF2 412 aa23.13■■□□□ 1.29
COL3A1-203ENST00000450867 CCDC18Q5T9S5 1454 aa23.12■■□□□ 1.29
COL3A1-203ENST00000450867 MAGI3Q5TCQ9 1506 aa23.08■■□□□ 1.28
COL3A1-203ENST00000450867 PLEKHD1A6NEE1 506 aa23.05■■□□□ 1.28
COL3A1-203ENST00000450867 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.05■■□□□ 1.28
COL3A1-203ENST00000450867 HNRNPUL2Q1KMD3 747 aaKnown RBP23.05■■□□□ 1.28
COL3A1-203ENST00000450867 TEX14Q8IWB6 1497 aa23.05■■□□□ 1.28
COL3A1-203ENST00000450867 CD109Q6YHK3 1445 aa23.03■■□□□ 1.28
COL3A1-203ENST00000450867 KCNH8Q96L42 1107 aa23.03■■□□□ 1.28
COL3A1-203ENST00000450867 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.01■■□□□ 1.27
COL3A1-203ENST00000450867 TROQ12816 1431 aaPredicted RBP23■■□□□ 1.27
COL3A1-203ENST00000450867 VPS8Q8N3P4 1428 aa23■■□□□ 1.27
COL3A1-203ENST00000450867 ATP1B4Q9UN42 357 aaPredicted RBP23■■□□□ 1.27
COL3A1-203ENST00000450867 CDK11AQ9UQ88 783 aaPredicted RBP23■■□□□ 1.27
COL3A1-203ENST00000450867 TTC37Q6PGP7 1564 aa23■■□□□ 1.27
COL3A1-203ENST00000450867 KDM6BO15054 1643 aa22.98■■□□□ 1.27
COL3A1-203ENST00000450867 KIF14Q15058 1648 aa22.98■■□□□ 1.27
COL3A1-203ENST00000450867 MYO5CQ9NQX4 1742 aa22.93■■□□□ 1.26
COL3A1-203ENST00000450867 ARAP3Q8WWN8 1544 aa22.92■■□□□ 1.26
COL3A1-203ENST00000450867 NEO1Q92859 1461 aa22.91■■□□□ 1.26
COL3A1-203ENST00000450867 CFAP74Q9C0B2 1584 aa22.9■■□□□ 1.26
COL3A1-203ENST00000450867 PHLDB1Q86UU1 1377 aa22.89■■□□□ 1.26
COL3A1-203ENST00000450867 TIAM1Q13009 1591 aa22.89■■□□□ 1.25
COL3A1-203ENST00000450867 MAP3K1Q13233 1512 aa22.87■■□□□ 1.25
COL3A1-203ENST00000450867 COL17A1Q9UMD9 1497 aaPredicted RBP22.87■■□□□ 1.25
COL3A1-203ENST00000450867 EHBP1L1Q8N3D4 1523 aa22.86■■□□□ 1.25
COL3A1-203ENST00000450867 PLCH2O75038 1416 aa22.85■■□□□ 1.25
COL3A1-203ENST00000450867 PREX2Q70Z35 1606 aa22.84■■□□□ 1.25
COL3A1-203ENST00000450867 CDC42BPAQ5VT25 1732 aa22.84■■□□□ 1.25
COL3A1-203ENST00000450867 CDC42BPBQ9Y5S2 1711 aa22.84■■□□□ 1.25
COL3A1-203ENST00000450867 FANCAO15360 1455 aa22.82■■□□□ 1.24
COL3A1-203ENST00000450867 MTUS2Q5JR59 1369 aa22.79■■□□□ 1.24
COL3A1-203ENST00000450867 RICTORQ6R327 1708 aa22.77■■□□□ 1.23
COL3A1-203ENST00000450867 AKNAQ7Z591 1439 aa22.76■■□□□ 1.23
COL3A1-203ENST00000450867 SUPT6HQ7KZ85 1726 aaKnown RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms