RNA–Protein interactions for RNA: ENST00000449954.1

LINC01961-201, Transcript of long intergenic non-protein coding RNA 1961, humanhuman

TSL 5 BASIC

Gene LINC01961, Length 745 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01961-201ENST00000449954 SYNJ2O15056 1496 aa15.32■□□□□ 0.04
LINC01961-201ENST00000449954 SLC4A2P04920 1241 aa15.31■□□□□ 0.04
LINC01961-201ENST00000449954 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
LINC01961-201ENST00000449954 SLC4A1APQ9BWU0 796 aaKnown RBP15.3■□□□□ 0.04
LINC01961-201ENST00000449954 RAD54L2Q9Y4B4 1467 aa15.27■□□□□ 0.04
LINC01961-201ENST00000449954 KIF13AQ9H1H9 1805 aa15.27■□□□□ 0.04
LINC01961-201ENST00000449954 CCDC88BA6NC98 1476 aa15.27■□□□□ 0.03
LINC01961-201ENST00000449954 GRIN2BQ13224 1484 aa15.27■□□□□ 0.03
LINC01961-201ENST00000449954 SOGA1O94964 1423 aa15.26■□□□□ 0.03
LINC01961-201ENST00000449954 U3KPZ7 1027 aaPredicted RBP15.26■□□□□ 0.03
LINC01961-201ENST00000449954 KDM4FA0A1W2PPD8 638 aa15.22■□□□□ 0.03
LINC01961-201ENST00000449954 ERCC6L2Q5T890 1561 aa15.16■□□□□ 0.02
LINC01961-201ENST00000449954 FGD5Q6ZNL6 1462 aa15.16■□□□□ 0.02
LINC01961-201ENST00000449954 PBRM1Q86U86 1689 aa15.15■□□□□ 0.02
LINC01961-201ENST00000449954 KDM6BO15054 1643 aa15.14■□□□□ 0.01
LINC01961-201ENST00000449954 CEP170Q5SW79 1584 aa15.13■□□□□ 0.01
LINC01961-201ENST00000449954 ABCC10Q5T3U5 1492 aa15.11■□□□□ 0.01
LINC01961-201ENST00000449954 SHROOM2Q13796 1616 aa15.08■□□□□ 0
LINC01961-201ENST00000449954 GRIN2AQ12879 1464 aa15.07■□□□□ 0
LINC01961-201ENST00000449954 MAPKBP1O60336 1514 aa15.07■□□□□ 0
LINC01961-201ENST00000449954 DIP2BQ9P265 1576 aa15.07■□□□□ 0
LINC01961-201ENST00000449954 FAM69CQ0P6D2 419 aa15.06■□□□□ 0
LINC01961-201ENST00000449954 NUP160Q12769 1436 aa15.05■□□□□ -0
LINC01961-201ENST00000449954 HECW2Q9P2P5 1572 aa15.04■□□□□ -0
LINC01961-201ENST00000449954 ABCA5Q8WWZ7 1642 aa15.03■□□□□ -0
LINC01961-201ENST00000449954 CUX1P39880 1505 aa15.02□□□□□ -0.01
LINC01961-201ENST00000449954 ADGRL1O94910 1474 aa15□□□□□ -0.01
LINC01961-201ENST00000449954 FBXO41Q8TF61 875 aa14.99□□□□□ -0.01
LINC01961-201ENST00000449954 ABCA10Q8WWZ4 1543 aa14.98□□□□□ -0.01
LINC01961-201ENST00000449954 CAPN15O75808 1086 aa14.98□□□□□ -0.01
LINC01961-201ENST00000449954 SPINK5Q9NQ38 1064 aaPredicted RBP14.98□□□□□ -0.01
LINC01961-201ENST00000449954 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
LINC01961-201ENST00000449954 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.97□□□□□ -0.01
LINC01961-201ENST00000449954 HNRNPUL2Q1KMD3 747 aaKnown RBP14.97□□□□□ -0.01
LINC01961-201ENST00000449954 NPM1P06748 294 aaKnown RBP eCLIP14.96□□□□□ -0.01
LINC01961-201ENST00000449954 FOXD4L1Q9NU39 408 aa14.93□□□□□ -0.02
LINC01961-201ENST00000449954 PRG4Q92954 1404 aaPredicted RBP14.92□□□□□ -0.02
LINC01961-201ENST00000449954 MYCNP04198 464 aaPredicted RBP14.91□□□□□ -0.02
LINC01961-201ENST00000449954 APLP2Q06481 763 aa14.91□□□□□ -0.02
LINC01961-201ENST00000449954 TSPOAP1O95153 1857 aa14.91□□□□□ -0.02
LINC01961-201ENST00000449954 SAMD1Q6SPF0 538 aaPredicted RBP14.89□□□□□ -0.03
LINC01961-201ENST00000449954 FHAD1B1AJZ9 1412 aa14.89□□□□□ -0.03
LINC01961-201ENST00000449954 ADCY10Q96PN6 1610 aa14.88□□□□□ -0.03
LINC01961-201ENST00000449954 LMTK3Q96Q04 1460 aa14.83□□□□□ -0.03
LINC01961-201ENST00000449954 JPH4Q96JJ6 628 aa14.82□□□□□ -0.04
LINC01961-201ENST00000449954 ERICH3Q5RHP9 1530 aa14.8□□□□□ -0.04
LINC01961-201ENST00000449954 RUSC2Q8N2Y8 1516 aa14.8□□□□□ -0.04
LINC01961-201ENST00000449954 ZBTB22O15209 634 aa14.79□□□□□ -0.04
LINC01961-201ENST00000449954 WRNQ14191 1432 aaPredicted RBP eCLIP14.77□□□□□ -0.04
LINC01961-201ENST00000449954 PPRC1Q5VV67 1664 aaKnown RBP14.77□□□□□ -0.05
LINC01961-201ENST00000449954 TOP2BQ02880 1626 aa14.77□□□□□ -0.05
LINC01961-201ENST00000449954 DSG3P32926 999 aa14.75□□□□□ -0.05
LINC01961-201ENST00000449954 GLI2P10070 1586 aa14.75□□□□□ -0.05
LINC01961-201ENST00000449954 ZNF219Q9P2Y4 722 aaPredicted RBP14.74□□□□□ -0.05
LINC01961-201ENST00000449954 PLB1Q6P1J6 1458 aa14.69□□□□□ -0.06
LINC01961-201ENST00000449954 SOCS7O14512 581 aa14.69□□□□□ -0.06
LINC01961-201ENST00000449954 TEX14Q8IWB6 1497 aa14.69□□□□□ -0.06
LINC01961-201ENST00000449954 COL17A1Q9UMD9 1497 aaPredicted RBP14.68□□□□□ -0.06
LINC01961-201ENST00000449954 ABCC2Q92887 1545 aa14.66□□□□□ -0.06
LINC01961-201ENST00000449954 ABCB7O75027 752 aa14.66□□□□□ -0.06
LINC01961-201ENST00000449954 ASXL2Q76L83 1435 aa14.66□□□□□ -0.06
LINC01961-201ENST00000449954 MAP3K4Q9Y6R4 1608 aa14.63□□□□□ -0.07
LINC01961-201ENST00000449954 BIVM-ERCC5R4GMW8 1640 aa14.63□□□□□ -0.07
LINC01961-201ENST00000449954 KIAA0586Q9BVV6 1533 aa14.61□□□□□ -0.07
LINC01961-201ENST00000449954 PTPRGP23470 1445 aa14.59□□□□□ -0.07
LINC01961-201ENST00000449954 EPRSP07814 1512 aaKnown RBP14.57□□□□□ -0.08
LINC01961-201ENST00000449954 CUL7Q14999 1698 aa14.56□□□□□ -0.08
LINC01961-201ENST00000449954 ILDR2Q71H61 639 aa14.56□□□□□ -0.08
LINC01961-201ENST00000449954 DISP3Q9P2K9 1392 aa14.56□□□□□ -0.08
LINC01961-201ENST00000449954 UHRF1BP1LA0JNW5 1464 aa14.56□□□□□ -0.08
LINC01961-201ENST00000449954 ATF5Q9Y2D1 282 aaPredicted RBP14.55□□□□□ -0.08
LINC01961-201ENST00000449954 PCF11O94913 1555 aaKnown RBP14.52□□□□□ -0.08
LINC01961-201ENST00000449954 TNIKQ9UKE5 1360 aa14.52□□□□□ -0.08
LINC01961-201ENST00000449954 CARMIL2Q6F5E8 1435 aa14.51□□□□□ -0.09
LINC01961-201ENST00000449954 KIF21BO75037 1637 aa14.51□□□□□ -0.09
LINC01961-201ENST00000449954 PTPRMP28827 1452 aa14.5□□□□□ -0.09
LINC01961-201ENST00000449954 KDM5BQ9UGL1 1544 aa14.49□□□□□ -0.09
LINC01961-201ENST00000449954 POLA2Q14181 598 aa14.48□□□□□ -0.09
LINC01961-201ENST00000449954 UACAQ9BZF9 1416 aa14.48□□□□□ -0.09
LINC01961-201ENST00000449954 EHMT2Q96KQ7 1210 aa14.47□□□□□ -0.09
LINC01961-201ENST00000449954 ADAMTSL3P82987 1691 aa14.46□□□□□ -0.1
LINC01961-201ENST00000449954 SPATA31D1Q6ZQQ2 1576 aa14.45□□□□□ -0.1
LINC01961-201ENST00000449954 MAGI3Q5TCQ9 1506 aa14.45□□□□□ -0.1
LINC01961-201ENST00000449954 ZCCHC11Q5TAX3 1644 aaKnown RBP14.44□□□□□ -0.1
LINC01961-201ENST00000449954 TTBK1Q5TCY1 1321 aaPredicted RBP14.43□□□□□ -0.1
LINC01961-201ENST00000449954 ATXN8OSP0DMR3 200 aa14.43□□□□□ -0.1
LINC01961-201ENST00000449954 WDR7Q9Y4E6 1490 aa14.43□□□□□ -0.1
LINC01961-201ENST00000449954 CERKQ8TCT0 537 aa14.42□□□□□ -0.1
LINC01961-201ENST00000449954 CSRNP3Q8WYN3 585 aa14.42□□□□□ -0.1
LINC01961-201ENST00000449954 CFAP43Q8NDM7 1665 aa14.42□□□□□ -0.1
LINC01961-201ENST00000449954 CD109Q6YHK3 1445 aa14.39□□□□□ -0.11
LINC01961-201ENST00000449954 IQGAP2Q13576 1575 aa14.38□□□□□ -0.11
LINC01961-201ENST00000449954 ARAP3Q8WWN8 1544 aa14.36□□□□□ -0.11
LINC01961-201ENST00000449954 BCORL1Q5H9F3 1711 aa14.35□□□□□ -0.11
LINC01961-201ENST00000449954 MADDQ8WXG6 1647 aa14.34□□□□□ -0.11
LINC01961-201ENST00000449954 IGF1RP08069 1367 aa14.34□□□□□ -0.11
LINC01961-201ENST00000449954 DISP1Q96F81 1524 aa14.33□□□□□ -0.12
LINC01961-201ENST00000449954 KIF27Q86VH2 1401 aa14.3□□□□□ -0.12
LINC01961-201ENST00000449954 PHLDB1Q86UU1 1377 aa14.27□□□□□ -0.12
LINC01961-201ENST00000449954 HSPA2P54652 639 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms