RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 PRG4Q92954 1404 aaPredicted RBP26.21■■□□□ 1.79
CHD3-205ENST00000449744 RUSC2Q8N2Y8 1516 aa26.2■■□□□ 1.79
CHD3-205ENST00000449744 CARMIL1Q5VZK9 1371 aa26.17■■□□□ 1.78
CHD3-205ENST00000449744 KIAA0586Q9BVV6 1533 aa26.14■■□□□ 1.77
CHD3-205ENST00000449744 RAPGEF2Q9Y4G8 1499 aa25.97■■□□□ 1.75
CHD3-205ENST00000449744 IQGAP2Q13576 1575 aa25.92■■□□□ 1.74
CHD3-205ENST00000449744 NPM1P06748 294 aaKnown RBP eCLIP25.92■■□□□ 1.74
CHD3-205ENST00000449744 CARMIL2Q6F5E8 1435 aa25.9■■□□□ 1.74
CHD3-205ENST00000449744 PTPRGP23470 1445 aa25.86■■□□□ 1.73
CHD3-205ENST00000449744 TTBK1Q5TCY1 1321 aaPredicted RBP25.86■■□□□ 1.73
CHD3-205ENST00000449744 TNIKQ9UKE5 1360 aa25.82■■□□□ 1.72
CHD3-205ENST00000449744 ADCY10Q96PN6 1610 aa25.82■■□□□ 1.72
CHD3-205ENST00000449744 AEBP2Q6ZN18 517 aaPredicted RBP25.81■■□□□ 1.72
CHD3-205ENST00000449744 MAPKBP1O60336 1514 aa25.75■■□□□ 1.71
CHD3-205ENST00000449744 DISP1Q96F81 1524 aa25.75■■□□□ 1.71
CHD3-205ENST00000449744 UGGT2Q9NYU1 1516 aa25.75■■□□□ 1.71
CHD3-205ENST00000449744 PRXQ9BXM0 1461 aa25.74■■□□□ 1.71
CHD3-205ENST00000449744 KIF13AQ9H1H9 1805 aa25.72■■□□□ 1.71
CHD3-205ENST00000449744 CTTNBP2Q8WZ74 1663 aa25.72■■□□□ 1.71
CHD3-205ENST00000449744 FAM69CQ0P6D2 419 aa25.71■■□□□ 1.71
CHD3-205ENST00000449744 ABCC10Q5T3U5 1492 aa25.7■■□□□ 1.7
CHD3-205ENST00000449744 KIAA0556O60303 1618 aa25.67■■□□□ 1.7
CHD3-205ENST00000449744 CSRNP3Q8WYN3 585 aa25.67■■□□□ 1.7
CHD3-205ENST00000449744 UACAQ9BZF9 1416 aa25.66■■□□□ 1.7
CHD3-205ENST00000449744 ABCC2Q92887 1545 aa25.65■■□□□ 1.7
CHD3-205ENST00000449744 UHRF1BP1LA0JNW5 1464 aa25.64■■□□□ 1.69
CHD3-205ENST00000449744 DIP2BQ9P265 1576 aa25.63■■□□□ 1.69
CHD3-205ENST00000449744 GOLGA3Q08378 1498 aa25.62■■□□□ 1.69
CHD3-205ENST00000449744 EEA1Q15075 1411 aa25.62■■□□□ 1.69
CHD3-205ENST00000449744 ASXL2Q76L83 1435 aa25.54■■□□□ 1.68
CHD3-205ENST00000449744 FAM9AQ8IZU1 332 aaPredicted RBP25.54■■□□□ 1.68
CHD3-205ENST00000449744 PLB1Q6P1J6 1458 aa25.53■■□□□ 1.68
CHD3-205ENST00000449744 KDM5BQ9UGL1 1544 aa25.51■■□□□ 1.67
CHD3-205ENST00000449744 ZCCHC11Q5TAX3 1644 aaKnown RBP25.46■■□□□ 1.67
CHD3-205ENST00000449744 TSPOAP1O95153 1857 aa25.45■■□□□ 1.67
CHD3-205ENST00000449744 CHIC1Q5VXU3 224 aa25.44■■□□□ 1.66
CHD3-205ENST00000449744 P3H3Q8IVL6 736 aa25.44■■□□□ 1.66
CHD3-205ENST00000449744 GLI2P10070 1586 aa25.42■■□□□ 1.66
CHD3-205ENST00000449744 ABCA8O94911 1581 aa25.41■■□□□ 1.66
CHD3-205ENST00000449744 EPRSP07814 1512 aaKnown RBP25.37■■□□□ 1.65
CHD3-205ENST00000449744 KDM6BO15054 1643 aa25.37■■□□□ 1.65
CHD3-205ENST00000449744 RANGAP1P46060 587 aaPredicted RBP25.36■■□□□ 1.65
CHD3-205ENST00000449744 KIF21BO75037 1637 aa25.35■■□□□ 1.65
CHD3-205ENST00000449744 SAMD9Q5K651 1589 aa25.35■■□□□ 1.65
CHD3-205ENST00000449744 WDR7Q9Y4E6 1490 aa25.34■■□□□ 1.65
CHD3-205ENST00000449744 MAP3K4Q9Y6R4 1608 aa25.27■■□□□ 1.64
CHD3-205ENST00000449744 PPRC1Q5VV67 1664 aaKnown RBP25.27■■□□□ 1.64
CHD3-205ENST00000449744 ARID3CA6NKF2 412 aa25.27■■□□□ 1.64
CHD3-205ENST00000449744 KCNH8Q96L42 1107 aa25.27■■□□□ 1.64
CHD3-205ENST00000449744 EHMT2Q96KQ7 1210 aa25.25■■□□□ 1.63
CHD3-205ENST00000449744 TEX14Q8IWB6 1497 aa25.24■■□□□ 1.63
CHD3-205ENST00000449744 UBTFP17480 764 aaKnown RBP25.23■■□□□ 1.63
CHD3-205ENST00000449744 FHOD3Q2V2M9 1422 aa25.22■■□□□ 1.63
CHD3-205ENST00000449744 RAPGEF6Q8TEU7 1601 aa25.22■■□□□ 1.63
CHD3-205ENST00000449744 ATP10BO94823 1461 aa25.21■■□□□ 1.63
CHD3-205ENST00000449744 EFCAB5A4FU69 1503 aa25.19■■□□□ 1.62
CHD3-205ENST00000449744 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.19■■□□□ 1.62
CHD3-205ENST00000449744 HNRNPUL2Q1KMD3 747 aaKnown RBP25.19■■□□□ 1.62
CHD3-205ENST00000449744 CD109Q6YHK3 1445 aa25.17■■□□□ 1.62
CHD3-205ENST00000449744 CFAP43Q8NDM7 1665 aa25.16■■□□□ 1.62
CHD3-205ENST00000449744 MAGI3Q5TCQ9 1506 aa25.12■■□□□ 1.61
CHD3-205ENST00000449744 NUP153P49790 1475 aaKnown RBP25.11■■□□□ 1.61
CHD3-205ENST00000449744 COL17A1Q9UMD9 1497 aaPredicted RBP25.09■■□□□ 1.61
CHD3-205ENST00000449744 KDM4FA0A1W2PPD8 638 aa25.05■■□□□ 1.6
CHD3-205ENST00000449744 PLEKHD1A6NEE1 506 aa25.03■■□□□ 1.6
CHD3-205ENST00000449744 ABCA9Q8IUA7 1624 aa25.01■■□□□ 1.59
CHD3-205ENST00000449744 FMN1Q68DA7 1419 aa24.99■■□□□ 1.59
CHD3-205ENST00000449744 ARHGAP35Q9NRY4 1499 aa24.99■■□□□ 1.59
CHD3-205ENST00000449744 ATP1B4Q9UN42 357 aaPredicted RBP24.97■■□□□ 1.59
CHD3-205ENST00000449744 PHLDB1Q86UU1 1377 aa24.93■■□□□ 1.58
CHD3-205ENST00000449744 CDK13Q14004 1512 aaKnown RBP24.91■■□□□ 1.58
CHD3-205ENST00000449744 ARAP3Q8WWN8 1544 aa24.91■■□□□ 1.58
CHD3-205ENST00000449744 HECW1Q76N89 1606 aa24.9■■□□□ 1.58
CHD3-205ENST00000449744 NEO1Q92859 1461 aa24.88■■□□□ 1.57
CHD3-205ENST00000449744 ADGRL1O94910 1474 aa24.84■■□□□ 1.57
CHD3-205ENST00000449744 CDK11AQ9UQ88 783 aaPredicted RBP24.84■■□□□ 1.57
CHD3-205ENST00000449744 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.83■■□□□ 1.57
CHD3-205ENST00000449744 RAPGEF3O95398 923 aa24.79■■□□□ 1.56
CHD3-205ENST00000449744 TTC37Q6PGP7 1564 aa24.79■■□□□ 1.56
CHD3-205ENST00000449744 FANCAO15360 1455 aa24.77■■□□□ 1.56
CHD3-205ENST00000449744 CFAP74Q9C0B2 1584 aa24.76■■□□□ 1.55
CHD3-205ENST00000449744 CLIP1P30622 1438 aa24.75■■□□□ 1.55
CHD3-205ENST00000449744 AKNAQ7Z591 1439 aa24.75■■□□□ 1.55
CHD3-205ENST00000449744 DENND4BO75064 1496 aaPredicted RBP24.72■■□□□ 1.55
CHD3-205ENST00000449744 CASKIN1Q8WXD9 1431 aa24.72■■□□□ 1.55
CHD3-205ENST00000449744 TROQ12816 1431 aaPredicted RBP24.71■■□□□ 1.55
CHD3-205ENST00000449744 PCF11O94913 1555 aaKnown RBP24.71■■□□□ 1.55
CHD3-205ENST00000449744 PLCH2O75038 1416 aa24.69■■□□□ 1.54
CHD3-205ENST00000449744 CCDC18Q5T9S5 1454 aa24.69■■□□□ 1.54
CHD3-205ENST00000449744 LRRIQ1Q96JM4 1722 aa24.69■■□□□ 1.54
CHD3-205ENST00000449744 KIF14Q15058 1648 aa24.68■■□□□ 1.54
CHD3-205ENST00000449744 FRMPD1Q5SYB0 1578 aa24.68■■□□□ 1.54
CHD3-205ENST00000449744 FYCO1Q9BQS8 1478 aa24.64■■□□□ 1.54
CHD3-205ENST00000449744 MYO5CQ9NQX4 1742 aa24.64■■□□□ 1.54
CHD3-205ENST00000449744 EFCAB2Q5VUJ9 269 aa24.64■■□□□ 1.54
CHD3-205ENST00000449744 RICTORQ6R327 1708 aa24.63■■□□□ 1.53
CHD3-205ENST00000449744 SCAPERQ9BY12 1400 aa24.61■■□□□ 1.53
CHD3-205ENST00000449744 ARID4BQ4LE39 1312 aaPredicted RBP24.6■■□□□ 1.53
CHD3-205ENST00000449744 ARHGAP5Q13017 1502 aa24.57■■□□□ 1.52
CHD3-205ENST00000449744 ARHGEF40Q8TER5 1519 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms