RNA–Protein interactions for RNA: ENST00000448940.5

CDC42BPA-209, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 7,355 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-209ENST00000448940 CNGB1Q14028 1251 aaPredicted RBP8.12□□□□□ -1.11
CDC42BPA-209ENST00000448940 MTUS2Q5JR59 1369 aa8.12□□□□□ -1.11
CDC42BPA-209ENST00000448940 CARMIL1Q5VZK9 1371 aa8.12□□□□□ -1.11
CDC42BPA-209ENST00000448940 PCGF6Q9BYE7 350 aa8.1□□□□□ -1.11
CDC42BPA-209ENST00000448940 PIP4K2BP78356 416 aa8.1□□□□□ -1.11
CDC42BPA-209ENST00000448940 ZNF326Q5BKZ1 582 aaKnown RBP8.1□□□□□ -1.11
CDC42BPA-209ENST00000448940 SMARCA4P51532 1647 aa8.1□□□□□ -1.11
CDC42BPA-209ENST00000448940 KLHL34Q8N239 644 aa8.1□□□□□ -1.11
CDC42BPA-209ENST00000448940 DNAJC5Q9H3Z4 198 aa8.09□□□□□ -1.11
CDC42BPA-209ENST00000448940 CFDP1Q9UEE9 299 aaPredicted RBP8.09□□□□□ -1.11
CDC42BPA-209ENST00000448940 NESP48681 1621 aa8.09□□□□□ -1.11
CDC42BPA-209ENST00000448940 CCDC88BA6NC98 1476 aa8.08□□□□□ -1.12
CDC42BPA-209ENST00000448940 PTPRGP23470 1445 aa8.08□□□□□ -1.12
CDC42BPA-209ENST00000448940 EFCAB2Q5VUJ9 269 aa8.08□□□□□ -1.12
CDC42BPA-209ENST00000448940 LOC105371045A0A1W2PR82 267 aa8.07□□□□□ -1.12
CDC42BPA-209ENST00000448940 HDGFP51858 240 aaKnown RBP8.06□□□□□ -1.12
CDC42BPA-209ENST00000448940 ARXQ96QS3 562 aa8.05□□□□□ -1.12
CDC42BPA-209ENST00000448940 PELP1Q8IZL8 1130 aaKnown RBP8.05□□□□□ -1.12
CDC42BPA-209ENST00000448940 IFT140Q96RY7 1462 aa8.05□□□□□ -1.12
CDC42BPA-209ENST00000448940 CCER1Q8TC90 406 aaPredicted RBP8.03□□□□□ -1.12
CDC42BPA-209ENST00000448940 TOP2AP11388 1531 aaKnown RBP8.03□□□□□ -1.12
CDC42BPA-209ENST00000448940 AQRO60306 1485 aaKnown RBP eCLIP8.03□□□□□ -1.122e-6■■■■■ 29.8
CDC42BPA-209ENST00000448940 GGT6Q6P531 493 aa8.03□□□□□ -1.12
CDC42BPA-209ENST00000448940 NEFMP07197 916 aa8.03□□□□□ -1.12
CDC42BPA-209ENST00000448940 EEA1Q15075 1411 aa8.01□□□□□ -1.13
CDC42BPA-209ENST00000448940 HMGXB3Q12766 1538 aa8.01□□□□□ -1.13
CDC42BPA-209ENST00000448940 BICRAQ9NZM4 1560 aa8.01□□□□□ -1.13
CDC42BPA-209ENST00000448940 CLIP1P30622 1438 aa8.01□□□□□ -1.13
CDC42BPA-209ENST00000448940 GAPVD1Q14C86 1478 aa8□□□□□ -1.13
CDC42BPA-209ENST00000448940 CHIC2Q9UKJ5 165 aa8□□□□□ -1.13
CDC42BPA-209ENST00000448940 GRIN2BQ13224 1484 aa7.99□□□□□ -1.13
CDC42BPA-209ENST00000448940 PPP1R1BQ9UD71 204 aaPredicted RBP7.98□□□□□ -1.13
CDC42BPA-209ENST00000448940 MSH5O43196 834 aa7.98□□□□□ -1.13
CDC42BPA-209ENST00000448940 EID1Q9Y6B2 187 aa7.97□□□□□ -1.13
CDC42BPA-209ENST00000448940 LAMC3Q9Y6N6 1575 aa7.97□□□□□ -1.13
CDC42BPA-209ENST00000448940 CCNB3Q8WWL7 1395 aa7.96□□□□□ -1.14
CDC42BPA-209ENST00000448940 CFTRP13569 1480 aa7.95□□□□□ -1.14
CDC42BPA-209ENST00000448940 KANK1Q14678 1352 aa7.95□□□□□ -1.14
CDC42BPA-209ENST00000448940 RAD54L2Q9Y4B4 1467 aa7.95□□□□□ -1.14
CDC42BPA-209ENST00000448940 WIZO95785 1651 aa7.94□□□□□ -1.14
CDC42BPA-209ENST00000448940 GOLGA3Q08378 1498 aa7.94□□□□□ -1.14
CDC42BPA-209ENST00000448940 FGD5Q6ZNL6 1462 aa7.94□□□□□ -1.14
CDC42BPA-209ENST00000448940 NUTM2BA6NNL0 878 aaPredicted RBP7.93□□□□□ -1.14
CDC42BPA-209ENST00000448940 NUTM2EB1AL46 878 aaPredicted RBP7.93□□□□□ -1.14
CDC42BPA-209ENST00000448940 NUTM2DQ5VT03 806 aaPredicted RBP7.93□□□□□ -1.14
CDC42BPA-209ENST00000448940 NUTM2AQ8IVF1 878 aaPredicted RBP7.93□□□□□ -1.14
CDC42BPA-209ENST00000448940 PRG4Q92954 1404 aaPredicted RBP7.93□□□□□ -1.14
CDC42BPA-209ENST00000448940 KAT6BQ8WYB5 2073 aa7.92□□□□□ -1.14
CDC42BPA-209ENST00000448940 FHAD1B1AJZ9 1412 aa7.92□□□□□ -1.14
CDC42BPA-209ENST00000448940 SPAG9O60271 1321 aaKnown RBP7.91□□□□□ -1.14
CDC42BPA-209ENST00000448940 TNIKQ9UKE5 1360 aa7.91□□□□□ -1.14
CDC42BPA-209ENST00000448940 DMRT2Q9Y5R5 561 aa7.91□□□□□ -1.14
CDC42BPA-209ENST00000448940 TMX4Q9H1E5 349 aaPredicted RBP7.9□□□□□ -1.14
CDC42BPA-209ENST00000448940 CFAP44Q96MT7 982 aa7.9□□□□□ -1.15
CDC42BPA-209ENST00000448940 WASHC2CQ9Y4E1 1318 aa7.89□□□□□ -1.15
CDC42BPA-209ENST00000448940 KIF3BO15066 747 aa7.89□□□□□ -1.15
CDC42BPA-209ENST00000448940 NEUROD1Q13562 356 aa7.88□□□□□ -1.15
CDC42BPA-209ENST00000448940 TOPBP1Q92547 1522 aa7.88□□□□□ -1.15
CDC42BPA-209ENST00000448940 UBAP1LF5GYI3 381 aa7.88□□□□□ -1.15
CDC42BPA-209ENST00000448940 POGZQ7Z3K3 1410 aa7.88□□□□□ -1.15
CDC42BPA-209ENST00000448940 RAPGEF2Q9Y4G8 1499 aa7.88□□□□□ -1.15
CDC42BPA-209ENST00000448940 SNAPC4Q5SXM2 1469 aa7.87□□□□□ -1.15
CDC42BPA-209ENST00000448940 EVA1CP58658 441 aa7.87□□□□□ -1.15
CDC42BPA-209ENST00000448940 PAK3O75914 559 aaPredicted RBP7.87□□□□□ -1.15
CDC42BPA-209ENST00000448940 DISP3Q9P2K9 1392 aa7.86□□□□□ -1.15
CDC42BPA-209ENST00000448940 RSPH4AQ5TD94 716 aa7.86□□□□□ -1.15
CDC42BPA-209ENST00000448940 FMN1Q68DA7 1419 aa7.86□□□□□ -1.15
CDC42BPA-209ENST00000448940 BCL11AQ9H165 835 aa7.86□□□□□ -1.15
CDC42BPA-209ENST00000448940 CSB-PGBD3P0DP91 1061 aa7.85□□□□□ -1.15
CDC42BPA-209ENST00000448940 RRP7BPQ9NSQ0 103 aa7.85□□□□□ -1.15
CDC42BPA-209ENST00000448940 POGKQ9P215 609 aa7.85□□□□□ -1.15
CDC42BPA-209ENST00000448940 ACIN1Q9UKV3 1341 aaKnown RBP7.85□□□□□ -1.15
CDC42BPA-209ENST00000448940 ATF3P18847 181 aa7.84□□□□□ -1.15
CDC42BPA-209ENST00000448940 POLA1P09884 1462 aaPredicted RBP7.82□□□□□ -1.16
CDC42BPA-209ENST00000448940 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.81□□□□□ -1.16
CDC42BPA-209ENST00000448940 RGL3Q3MIN7 710 aa7.81□□□□□ -1.16
CDC42BPA-209ENST00000448940 SYNJ2O15056 1496 aa7.81□□□□□ -1.16
CDC42BPA-209ENST00000448940 SYNJ1O43426 1573 aa7.81□□□□□ -1.16
CDC42BPA-209ENST00000448940 KDM2AQ9Y2K7 1162 aa7.81□□□□□ -1.16
CDC42BPA-209ENST00000448940 MAGI1Q96QZ7 1491 aaPredicted RBP7.8□□□□□ -1.16
CDC42BPA-209ENST00000448940 HNRNPMP52272 730 aaKnown RBP eCLIP7.8□□□□□ -1.165e-11■■■■■ 37.4
CDC42BPA-209ENST00000448940 IGF1RP08069 1367 aa7.79□□□□□ -1.16
CDC42BPA-209ENST00000448940 ERICH6Q7L0X2 663 aa7.79□□□□□ -1.16
CDC42BPA-209ENST00000448940 DNMBPQ6XZF7 1577 aa7.79□□□□□ -1.16
CDC42BPA-209ENST00000448940 TOM1O60784 492 aa7.79□□□□□ -1.16
CDC42BPA-209ENST00000448940 ZBTB47Q9UFB7 747 aaPredicted RBP7.78□□□□□ -1.16
CDC42BPA-209ENST00000448940 G3V3G9 751 aa7.77□□□□□ -1.16
CDC42BPA-209ENST00000448940 SOX12O15370 315 aa7.77□□□□□ -1.16
CDC42BPA-209ENST00000448940 DCAF8Q5TAQ9 597 aa7.77□□□□□ -1.16
CDC42BPA-209ENST00000448940 RAPGEF3O95398 923 aa7.76□□□□□ -1.17
CDC42BPA-209ENST00000448940 TRIM26Q12899 539 aaPredicted RBP7.76□□□□□ -1.17
CDC42BPA-209ENST00000448940 THEMISQ8N1K5 641 aaPredicted RBP7.76□□□□□ -1.17
CDC42BPA-209ENST00000448940 CCDC18Q5T9S5 1454 aa7.76□□□□□ -1.17
CDC42BPA-209ENST00000448940 FHOD3Q2V2M9 1422 aa7.76□□□□□ -1.17
CDC42BPA-209ENST00000448940 C16orf71Q8IYS4 520 aaPredicted RBP7.76□□□□□ -1.17
CDC42BPA-209ENST00000448940 ZNF608Q9ULD9 1512 aaPredicted RBP7.75□□□□□ -1.17
CDC42BPA-209ENST00000448940 UACAQ9BZF9 1416 aa7.74□□□□□ -1.17
CDC42BPA-209ENST00000448940 ZEB1P37275 1124 aaPredicted RBP7.74□□□□□ -1.17
CDC42BPA-209ENST00000448940 CD109Q6YHK3 1445 aa7.74□□□□□ -1.17
CDC42BPA-209ENST00000448940 ANKLE2Q86XL3 938 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms