RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SETD5Q9C0A6 1442 aa16.59■□□□□ 0.25
MSH6-204ENST00000445503 BICRAQ9NZM4 1560 aa16.57■□□□□ 0.24
MSH6-204ENST00000445503 RRP7BPQ9NSQ0 103 aa16.57■□□□□ 0.24
MSH6-204ENST00000445503 MTUS2Q5JR59 1369 aa16.56■□□□□ 0.24
MSH6-204ENST00000445503 UNC13AQ9UPW8 1703 aa16.55■□□□□ 0.24
MSH6-204ENST00000445503 ZNF326Q5BKZ1 582 aaKnown RBP16.54■□□□□ 0.24
MSH6-204ENST00000445503 PRXQ9BXM0 1461 aa16.53■□□□□ 0.24
MSH6-204ENST00000445503 FAM9BQ8IZU0 186 aa16.51■□□□□ 0.23
MSH6-204ENST00000445503 CDK11AQ9UQ88 783 aaPredicted RBP16.5■□□□□ 0.23
MSH6-204ENST00000445503 IGF1RP08069 1367 aa16.48■□□□□ 0.23
MSH6-204ENST00000445503 PPP1R15AO75807 674 aaPredicted RBP16.48■□□□□ 0.23
MSH6-204ENST00000445503 ARHGAP35Q9NRY4 1499 aa16.48■□□□□ 0.23
MSH6-204ENST00000445503 TOP2BQ02880 1626 aa16.48■□□□□ 0.23
MSH6-204ENST00000445503 ANP32EQ9BTT0 268 aa16.47■□□□□ 0.23
MSH6-204ENST00000445503 RRBP1Q9P2E9 1410 aaKnown RBP16.47■□□□□ 0.23
MSH6-204ENST00000445503 FHOD3Q2V2M9 1422 aa16.46■□□□□ 0.23
MSH6-204ENST00000445503 PHLDB1Q86UU1 1377 aa16.46■□□□□ 0.23
MSH6-204ENST00000445503 SENP3-EIF4A1A0A087X0R7 540 aa16.45■□□□□ 0.22
MSH6-204ENST00000445503 FHAD1B1AJZ9 1412 aa16.45■□□□□ 0.22
MSH6-204ENST00000445503 CUX1P39880 1505 aa16.43■□□□□ 0.22
MSH6-204ENST00000445503 ERICH3Q5RHP9 1530 aa16.43■□□□□ 0.22
MSH6-204ENST00000445503 RBM19Q9Y4C8 960 aaKnown RBP16.38■□□□□ 0.21
MSH6-204ENST00000445503 PEG3Q9GZU2 1588 aa16.38■□□□□ 0.21
MSH6-204ENST00000445503 MRS2Q9HD23 443 aa16.38■□□□□ 0.21
MSH6-204ENST00000445503 FOXD1Q16676 465 aa16.38■□□□□ 0.21
MSH6-204ENST00000445503 ZNF777Q9ULD5 760 aaPredicted RBP16.38■□□□□ 0.21
MSH6-204ENST00000445503 TIMELESSQ9UNS1 1208 aa16.38■□□□□ 0.21
MSH6-204ENST00000445503 CADPSQ9ULU8 1353 aa16.37■□□□□ 0.21
MSH6-204ENST00000445503 EIF4G2P78344 907 aaKnown RBP eCLIP16.37■□□□□ 0.21
MSH6-204ENST00000445503 CCER2I3L3R5 266 aa16.37■□□□□ 0.21
MSH6-204ENST00000445503 NCAPD3P42695 1498 aa16.35■□□□□ 0.21
MSH6-204ENST00000445503 LRRC9Q6ZRR7 1453 aa16.34■□□□□ 0.21
MSH6-204ENST00000445503 HSPA5P11021 654 aaKnown RBP16.33■□□□□ 0.2
MSH6-204ENST00000445503 TDRD9Q8NDG6 1382 aaKnown RBP16.33■□□□□ 0.2
MSH6-204ENST00000445503 FGD5Q6ZNL6 1462 aa16.32■□□□□ 0.2
MSH6-204ENST00000445503 FBLN2P98095 1184 aa16.31■□□□□ 0.2
MSH6-204ENST00000445503 CFTRP13569 1480 aa16.3■□□□□ 0.2
MSH6-204ENST00000445503 WDR97A6NE52 1622 aa16.3■□□□□ 0.2
MSH6-204ENST00000445503 RAD54L2Q9Y4B4 1467 aa16.28■□□□□ 0.2
MSH6-204ENST00000445503 SLC4A1APQ9BWU0 796 aaKnown RBP16.28■□□□□ 0.2
MSH6-204ENST00000445503 SALL2Q9Y467 1007 aaPredicted RBP16.26■□□□□ 0.19
MSH6-204ENST00000445503 B4GALNT3Q6L9W6 998 aa16.25■□□□□ 0.19
MSH6-204ENST00000445503 TIAM1Q13009 1591 aa16.23■□□□□ 0.19
MSH6-204ENST00000445503 L3MBTL2Q969R5 705 aa16.21■□□□□ 0.19
MSH6-204ENST00000445503 BIVM-ERCC5R4GMW8 1640 aa16.21■□□□□ 0.19
MSH6-204ENST00000445503 FMN1Q68DA7 1419 aa16.2■□□□□ 0.18
MSH6-204ENST00000445503 FANCD2Q9BXW9 1451 aa16.2■□□□□ 0.18
MSH6-204ENST00000445503 KDM2AQ9Y2K7 1162 aa16.2■□□□□ 0.18
MSH6-204ENST00000445503 CCDC18Q5T9S5 1454 aa16.2■□□□□ 0.18
MSH6-204ENST00000445503 MPHOSPH9Q99550 1183 aa16.19■□□□□ 0.18
MSH6-204ENST00000445503 MAPKBP1O60336 1514 aa16.19■□□□□ 0.18
MSH6-204ENST00000445503 FGD6Q6ZV73 1430 aa16.18■□□□□ 0.18
MSH6-204ENST00000445503 NBR1Q14596 966 aa16.16■□□□□ 0.18
MSH6-204ENST00000445503 CCDC136Q96JN2 1154 aa16.15■□□□□ 0.18
MSH6-204ENST00000445503 PPP4R2Q9NY27 417 aa16.15■□□□□ 0.18
MSH6-204ENST00000445503 TMC1Q8TDI8 760 aa16.15■□□□□ 0.18
MSH6-204ENST00000445503 HMGXB3Q12766 1538 aa16.14■□□□□ 0.17
MSH6-204ENST00000445503 NPM2Q86SE8 214 aaKnown RBP16.13■□□□□ 0.17
MSH6-204ENST00000445503 WASHC2AQ641Q2 1341 aa16.12■□□□□ 0.17
MSH6-204ENST00000445503 CCDC184Q52MB2 194 aa16.12■□□□□ 0.17
MSH6-204ENST00000445503 CASKIN1Q8WXD9 1431 aa16.1■□□□□ 0.17
MSH6-204ENST00000445503 UACAQ9BZF9 1416 aa16.09■□□□□ 0.17
MSH6-204ENST00000445503 PCF11O94913 1555 aaKnown RBP16.09■□□□□ 0.17
MSH6-204ENST00000445503 BCL11AQ9H165 835 aa16.08■□□□□ 0.17
MSH6-204ENST00000445503 RTL5Q5HYW3 569 aaPredicted RBP16.08■□□□□ 0.16
MSH6-204ENST00000445503 CFDP1Q9UEE9 299 aaPredicted RBP16.08■□□□□ 0.16
MSH6-204ENST00000445503 NESP48681 1621 aa16.07■□□□□ 0.16
MSH6-204ENST00000445503 PRKRIP1Q9H875 184 aaPredicted RBP16.06■□□□□ 0.16
MSH6-204ENST00000445503 ANP32AP39687 249 aaKnown RBP16.06■□□□□ 0.16
MSH6-204ENST00000445503 NCOA2Q15596 1464 aa16.04■□□□□ 0.16
MSH6-204ENST00000445503 FYCO1Q9BQS8 1478 aa16.04■□□□□ 0.16
MSH6-204ENST00000445503 MYOM3Q5VTT5 1437 aa16.04■□□□□ 0.16
MSH6-204ENST00000445503 ZNF644Q9H582 1327 aaPredicted RBP16.04■□□□□ 0.16
MSH6-204ENST00000445503 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.02■□□□□ 0.161e-10■■■□□ 14.8
MSH6-204ENST00000445503 CARD11Q9BXL7 1154 aa16.02■□□□□ 0.15
MSH6-204ENST00000445503 POLA1P09884 1462 aaPredicted RBP16.01■□□□□ 0.15
MSH6-204ENST00000445503 RGL3Q3MIN7 710 aa16.01■□□□□ 0.15
MSH6-204ENST00000445503 PTPRKQ15262 1439 aa16■□□□□ 0.15
MSH6-204ENST00000445503 MAP3K1Q13233 1512 aa16■□□□□ 0.15
MSH6-204ENST00000445503 HFM1A2PYH4 1435 aa16■□□□□ 0.15
MSH6-204ENST00000445503 C11orf95C9JLR9 678 aaPredicted RBP16■□□□□ 0.15
MSH6-204ENST00000445503 PKD2Q13563 968 aa16■□□□□ 0.15
MSH6-204ENST00000445503 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
MSH6-204ENST00000445503 MYT1LQ9UL68 1186 aa16■□□□□ 0.15
MSH6-204ENST00000445503 NAIPQ13075 1403 aa16■□□□□ 0.15
MSH6-204ENST00000445503 TSPY4P0CV99 314 aa15.98■□□□□ 0.15
MSH6-204ENST00000445503 TSPY10P0CW01 314 aa15.98■□□□□ 0.15
MSH6-204ENST00000445503 NBPF8Q3BBV2 869 aa15.98■□□□□ 0.15
MSH6-204ENST00000445503 GAPVD1Q14C86 1478 aa15.97■□□□□ 0.15
MSH6-204ENST00000445503 TOPBP1Q92547 1522 aa15.97■□□□□ 0.15
MSH6-204ENST00000445503 DAXXQ9UER7 740 aaPredicted RBP15.96■□□□□ 0.14
MSH6-204ENST00000445503 ZBTB47Q9UFB7 747 aaPredicted RBP15.96■□□□□ 0.14
MSH6-204ENST00000445503 MSH5O43196 834 aa15.95■□□□□ 0.14
MSH6-204ENST00000445503 CCDC7Q96M83 1385 aa15.95■□□□□ 0.14
MSH6-204ENST00000445503 KIF7Q2M1P5 1343 aa15.95■□□□□ 0.14
MSH6-204ENST00000445503 DNAJC5BQ9UF47 199 aa15.94■□□□□ 0.14
MSH6-204ENST00000445503 DCAF11Q8TEB1 546 aa15.94■□□□□ 0.14
MSH6-204ENST00000445503 AQRO60306 1485 aaKnown RBP eCLIP15.93■□□□□ 0.148e-7■■■■□ 22.6
MSH6-204ENST00000445503 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.93■□□□□ 0.144e-9■■■□□ 16.4
MSH6-204ENST00000445503 PLEKHD1A6NEE1 506 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms