RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 CARMIL1Q5VZK9 1371 aa18.81■□□□□ 0.6
SF3A1-203ENST00000444440 JPH4Q96JJ6 628 aa18.8■□□□□ 0.6
SF3A1-203ENST00000444440 KIAA0586Q9BVV6 1533 aa18.79■□□□□ 0.6
SF3A1-203ENST00000444440 TRHP20396 242 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-203ENST00000444440 KIF13AQ9H1H9 1805 aa18.75■□□□□ 0.59
SF3A1-203ENST00000444440 ADCY10Q96PN6 1610 aa18.73■□□□□ 0.59
SF3A1-203ENST00000444440 IQGAP2Q13576 1575 aa18.72■□□□□ 0.59
SF3A1-203ENST00000444440 CTTNBP2Q8WZ74 1663 aa18.72■□□□□ 0.59
SF3A1-203ENST00000444440 RAPGEF2Q9Y4G8 1499 aa18.69■□□□□ 0.58
SF3A1-203ENST00000444440 DISP1Q96F81 1524 aa18.62■□□□□ 0.57
SF3A1-203ENST00000444440 UGGT2Q9NYU1 1516 aa18.59■□□□□ 0.57
SF3A1-203ENST00000444440 PRXQ9BXM0 1461 aa18.58■□□□□ 0.57
SF3A1-203ENST00000444440 KIAA0556O60303 1618 aa18.58■□□□□ 0.56
SF3A1-203ENST00000444440 MAPKBP1O60336 1514 aa18.58■□□□□ 0.56
SF3A1-203ENST00000444440 DIP2BQ9P265 1576 aa18.55■□□□□ 0.56
SF3A1-203ENST00000444440 CARMIL2Q6F5E8 1435 aa18.54■□□□□ 0.56
SF3A1-203ENST00000444440 TNIKQ9UKE5 1360 aa18.54■□□□□ 0.56
SF3A1-203ENST00000444440 PTPRGP23470 1445 aa18.53■□□□□ 0.56
SF3A1-203ENST00000444440 TTBK1Q5TCY1 1321 aaPredicted RBP18.52■□□□□ 0.56
SF3A1-203ENST00000444440 TSPOAP1O95153 1857 aa18.52■□□□□ 0.55
SF3A1-203ENST00000444440 ABCC10Q5T3U5 1492 aa18.5■□□□□ 0.55
SF3A1-203ENST00000444440 ABCC2Q92887 1545 aa18.47■□□□□ 0.55
SF3A1-203ENST00000444440 ZCCHC11Q5TAX3 1644 aaKnown RBP18.46■□□□□ 0.55
SF3A1-203ENST00000444440 UHRF1BP1LA0JNW5 1464 aa18.46■□□□□ 0.54
SF3A1-203ENST00000444440 UACAQ9BZF9 1416 aa18.43■□□□□ 0.54
SF3A1-203ENST00000444440 PPRC1Q5VV67 1664 aaKnown RBP18.42■□□□□ 0.54
SF3A1-203ENST00000444440 NPM1P06748 294 aaKnown RBP eCLIP18.42■□□□□ 0.54
SF3A1-203ENST00000444440 FAM69CQ0P6D2 419 aa18.4■□□□□ 0.54
SF3A1-203ENST00000444440 CSRNP3Q8WYN3 585 aa18.4■□□□□ 0.54
SF3A1-203ENST00000444440 KDM5BQ9UGL1 1544 aa18.39■□□□□ 0.54
SF3A1-203ENST00000444440 PLB1Q6P1J6 1458 aa18.39■□□□□ 0.53
SF3A1-203ENST00000444440 ABCA8O94911 1581 aa18.38■□□□□ 0.53
SF3A1-203ENST00000444440 SAMD9Q5K651 1589 aa18.38■□□□□ 0.53
SF3A1-203ENST00000444440 ASXL2Q76L83 1435 aa18.38■□□□□ 0.53
SF3A1-203ENST00000444440 GOLGA3Q08378 1498 aa18.38■□□□□ 0.53
SF3A1-203ENST00000444440 EEA1Q15075 1411 aa18.37■□□□□ 0.53
SF3A1-203ENST00000444440 KIF21BO75037 1637 aa18.36■□□□□ 0.53
SF3A1-203ENST00000444440 GLI2P10070 1586 aa18.34■□□□□ 0.53
SF3A1-203ENST00000444440 FAM9AQ8IZU1 332 aaPredicted RBP18.34■□□□□ 0.53
SF3A1-203ENST00000444440 CHIC1Q5VXU3 224 aa18.33■□□□□ 0.52
SF3A1-203ENST00000444440 MAP3K4Q9Y6R4 1608 aa18.33■□□□□ 0.52
SF3A1-203ENST00000444440 KDM6BO15054 1643 aa18.3■□□□□ 0.52
SF3A1-203ENST00000444440 EPRSP07814 1512 aaKnown RBP18.28■□□□□ 0.52
SF3A1-203ENST00000444440 P3H3Q8IVL6 736 aa18.27■□□□□ 0.52
SF3A1-203ENST00000444440 RAPGEF6Q8TEU7 1601 aa18.25■□□□□ 0.51
SF3A1-203ENST00000444440 WDR7Q9Y4E6 1490 aa18.24■□□□□ 0.51
SF3A1-203ENST00000444440 CFAP43Q8NDM7 1665 aa18.21■□□□□ 0.51
SF3A1-203ENST00000444440 FHOD3Q2V2M9 1422 aa18.19■□□□□ 0.5
SF3A1-203ENST00000444440 RANGAP1P46060 587 aaPredicted RBP18.18■□□□□ 0.5
SF3A1-203ENST00000444440 ATP10BO94823 1461 aa18.18■□□□□ 0.5
SF3A1-203ENST00000444440 ARID3CA6NKF2 412 aa18.16■□□□□ 0.5
SF3A1-203ENST00000444440 EHMT2Q96KQ7 1210 aa18.16■□□□□ 0.5
SF3A1-203ENST00000444440 EFCAB5A4FU69 1503 aa18.16■□□□□ 0.5
SF3A1-203ENST00000444440 NUP153P49790 1475 aaKnown RBP18.14■□□□□ 0.5
SF3A1-203ENST00000444440 COL17A1Q9UMD9 1497 aaPredicted RBP18.14■□□□□ 0.5
SF3A1-203ENST00000444440 ABCA9Q8IUA7 1624 aa18.11■□□□□ 0.49
SF3A1-203ENST00000444440 LRRIQ1Q96JM4 1722 aa18.09■□□□□ 0.49
SF3A1-203ENST00000444440 TEX14Q8IWB6 1497 aa18.09■□□□□ 0.49
SF3A1-203ENST00000444440 KCNH8Q96L42 1107 aa18.09■□□□□ 0.49
SF3A1-203ENST00000444440 MAGI3Q5TCQ9 1506 aa18.08■□□□□ 0.48
SF3A1-203ENST00000444440 ARHGAP35Q9NRY4 1499 aa18.07■□□□□ 0.48
SF3A1-203ENST00000444440 CD109Q6YHK3 1445 aa18.06■□□□□ 0.48
SF3A1-203ENST00000444440 UBTFP17480 764 aaKnown RBP18.03■□□□□ 0.48
SF3A1-203ENST00000444440 CDK13Q14004 1512 aaKnown RBP18.03■□□□□ 0.48
SF3A1-203ENST00000444440 TTC37Q6PGP7 1564 aa17.99■□□□□ 0.47
SF3A1-203ENST00000444440 AEBP2Q6ZN18 517 aaPredicted RBP17.98■□□□□ 0.47
SF3A1-203ENST00000444440 HECW1Q76N89 1606 aa17.98■□□□□ 0.47
SF3A1-203ENST00000444440 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.96■□□□□ 0.47
SF3A1-203ENST00000444440 KDM4FA0A1W2PPD8 638 aa17.95■□□□□ 0.46
SF3A1-203ENST00000444440 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.95■□□□□ 0.46
SF3A1-203ENST00000444440 HNRNPUL2Q1KMD3 747 aaKnown RBP17.95■□□□□ 0.46
SF3A1-203ENST00000444440 FRMPD1Q5SYB0 1578 aa17.94■□□□□ 0.46
SF3A1-203ENST00000444440 ARAP3Q8WWN8 1544 aa17.93■□□□□ 0.46
SF3A1-203ENST00000444440 PCF11O94913 1555 aaKnown RBP17.93■□□□□ 0.46
SF3A1-203ENST00000444440 FMN1Q68DA7 1419 aa17.92■□□□□ 0.46
SF3A1-203ENST00000444440 KIF14Q15058 1648 aa17.91■□□□□ 0.46
SF3A1-203ENST00000444440 RICTORQ6R327 1708 aa17.91■□□□□ 0.46
SF3A1-203ENST00000444440 ADGRL1O94910 1474 aa17.89■□□□□ 0.45
SF3A1-203ENST00000444440 MYO5CQ9NQX4 1742 aa17.88■□□□□ 0.45
SF3A1-203ENST00000444440 NEO1Q92859 1461 aa17.87■□□□□ 0.45
SF3A1-203ENST00000444440 PLEKHD1A6NEE1 506 aa17.86■□□□□ 0.45
SF3A1-203ENST00000444440 CFAP74Q9C0B2 1584 aa17.86■□□□□ 0.45
SF3A1-203ENST00000444440 ATP1B4Q9UN42 357 aaPredicted RBP17.83■□□□□ 0.44
SF3A1-203ENST00000444440 CDC42BPBQ9Y5S2 1711 aa17.82■□□□□ 0.44
SF3A1-203ENST00000444440 FANCAO15360 1455 aa17.82■□□□□ 0.44
SF3A1-203ENST00000444440 SIGLEC1Q9BZZ2 1709 aa17.81■□□□□ 0.44
SF3A1-203ENST00000444440 RAPGEF3O95398 923 aa17.8■□□□□ 0.44
SF3A1-203ENST00000444440 CASKIN1Q8WXD9 1431 aa17.8■□□□□ 0.44
SF3A1-203ENST00000444440 PHLDB1Q86UU1 1377 aa17.79■□□□□ 0.44
SF3A1-203ENST00000444440 CLIP1P30622 1438 aa17.79■□□□□ 0.44
SF3A1-203ENST00000444440 AKNAQ7Z591 1439 aa17.79■□□□□ 0.44
SF3A1-203ENST00000444440 TROQ12816 1431 aaPredicted RBP17.78■□□□□ 0.44
SF3A1-203ENST00000444440 CDC42BPAQ5VT25 1732 aa17.78■□□□□ 0.44
SF3A1-203ENST00000444440 ARHGEF40Q8TER5 1519 aa17.77■□□□□ 0.43
SF3A1-203ENST00000444440 FYCO1Q9BQS8 1478 aa17.76■□□□□ 0.43
SF3A1-203ENST00000444440 PLCH2O75038 1416 aa17.75■□□□□ 0.43
SF3A1-203ENST00000444440 PREX2Q70Z35 1606 aa17.75■□□□□ 0.43
SF3A1-203ENST00000444440 CCDC18Q5T9S5 1454 aa17.75■□□□□ 0.43
SF3A1-203ENST00000444440 ADAMTSL3P82987 1691 aa17.74■□□□□ 0.43
SF3A1-203ENST00000444440 ZMYM4Q5VZL5 1548 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms