RNA–Protein interactions for RNA: ENST00000441542.6

HDAC9-214, Transcript of histone deacetylase 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HDAC9, Length 3,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-214ENST00000441542 SENP3-EIF4A1A0A087X0R7 540 aa10.54□□□□□ -0.72
HDAC9-214ENST00000441542 SIN3AQ96ST3 1273 aa10.54□□□□□ -0.72
HDAC9-214ENST00000441542 B4GALNT3Q6L9W6 998 aa10.53□□□□□ -0.72
HDAC9-214ENST00000441542 IL27Q8NEV9 243 aa10.52□□□□□ -0.73
HDAC9-214ENST00000441542 AMER1Q5JTC6 1135 aaPredicted RBP10.52□□□□□ -0.73
HDAC9-214ENST00000441542 PAK3O75914 559 aaPredicted RBP10.51□□□□□ -0.73
HDAC9-214ENST00000441542 MROH2BQ7Z745 1585 aa10.51□□□□□ -0.73
HDAC9-214ENST00000441542 CLIP1P30622 1438 aa10.5□□□□□ -0.73
HDAC9-214ENST00000441542 RTL5Q5HYW3 569 aaPredicted RBP10.5□□□□□ -0.73
HDAC9-214ENST00000441542 KANK4Q5T7N3 995 aaPredicted RBP10.49□□□□□ -0.73
HDAC9-214ENST00000441542 KLHL34Q8N239 644 aa10.49□□□□□ -0.73
HDAC9-214ENST00000441542 FANCIQ9NVI1 1328 aa10.48□□□□□ -0.73
HDAC9-214ENST00000441542 NOP58Q9Y2X3 529 aaKnown RBP10.46□□□□□ -0.73
HDAC9-214ENST00000441542 LAMC3Q9Y6N6 1575 aa10.46□□□□□ -0.73
HDAC9-214ENST00000441542 NPM2Q86SE8 214 aaKnown RBP10.46□□□□□ -0.73
HDAC9-214ENST00000441542 NCAPD3P42695 1498 aa10.46□□□□□ -0.74
HDAC9-214ENST00000441542 WIZO95785 1651 aa10.45□□□□□ -0.74
HDAC9-214ENST00000441542 PRDM2Q13029 1718 aa10.44□□□□□ -0.74
HDAC9-214ENST00000441542 GOLGA3Q08378 1498 aa10.44□□□□□ -0.74
HDAC9-214ENST00000441542 BAZ1BQ9UIG0 1483 aaKnown RBP10.43□□□□□ -0.74
HDAC9-214ENST00000441542 WDR97A6NE52 1622 aa10.43□□□□□ -0.74
HDAC9-214ENST00000441542 ATP1B4Q9UN42 357 aaPredicted RBP10.43□□□□□ -0.74
HDAC9-214ENST00000441542 HOMEZQ8IX15 550 aa10.42□□□□□ -0.74
HDAC9-214ENST00000441542 FAM50AQ14320 339 aaKnown RBP10.41□□□□□ -0.74
HDAC9-214ENST00000441542 LAS1LQ9Y4W2 734 aaKnown RBP10.41□□□□□ -0.74
HDAC9-214ENST00000441542 FAM9BQ8IZU0 186 aa10.41□□□□□ -0.74
HDAC9-214ENST00000441542 MYT1LQ9UL68 1186 aa10.39□□□□□ -0.75
HDAC9-214ENST00000441542 VPS8Q8N3P4 1428 aa10.39□□□□□ -0.75
HDAC9-214ENST00000441542 PPP1R15AO75807 674 aaPredicted RBP10.38□□□□□ -0.75
HDAC9-214ENST00000441542 PODXL2Q9NZ53 605 aa10.38□□□□□ -0.75
HDAC9-214ENST00000441542 PPP4R2Q9NY27 417 aa10.37□□□□□ -0.75
HDAC9-214ENST00000441542 ZBTB47Q9UFB7 747 aaPredicted RBP10.37□□□□□ -0.75
HDAC9-214ENST00000441542 ANP32AP39687 249 aaKnown RBP10.36□□□□□ -0.75
HDAC9-214ENST00000441542 TULP1O00294 542 aaPredicted RBP10.35□□□□□ -0.75
HDAC9-214ENST00000441542 UBE2Q2Q8WVN8 375 aa10.35□□□□□ -0.75
HDAC9-214ENST00000441542 WDR62O43379 1518 aa10.34□□□□□ -0.75
HDAC9-214ENST00000441542 BAZ1AQ9NRL2 1556 aaPredicted RBP10.34□□□□□ -0.75
HDAC9-214ENST00000441542 CCER2I3L3R5 266 aa10.33□□□□□ -0.76
HDAC9-214ENST00000441542 RAB3GAP2Q9H2M9 1393 aa10.33□□□□□ -0.76
HDAC9-214ENST00000441542 SMARCA4P51532 1647 aa10.32□□□□□ -0.76
HDAC9-214ENST00000441542 CCDC184Q52MB2 194 aa10.31□□□□□ -0.76
HDAC9-214ENST00000441542 POLR3GLQ9BT43 218 aa10.31□□□□□ -0.76
HDAC9-214ENST00000441542 NEFMP07197 916 aa10.31□□□□□ -0.76
HDAC9-214ENST00000441542 RAPGEF2Q9Y4G8 1499 aa10.3□□□□□ -0.76
HDAC9-214ENST00000441542 BRPF3Q9ULD4 1205 aa10.29□□□□□ -0.76
HDAC9-214ENST00000441542 EEA1Q15075 1411 aa10.29□□□□□ -0.76
HDAC9-214ENST00000441542 CEP164Q9UPV0 1460 aa10.29□□□□□ -0.76
HDAC9-214ENST00000441542 CCNB3Q8WWL7 1395 aa10.27□□□□□ -0.77
HDAC9-214ENST00000441542 IPO9Q96P70 1041 aaKnown RBP10.27□□□□□ -0.77
HDAC9-214ENST00000441542 MRS2Q9HD23 443 aa10.27□□□□□ -0.77
HDAC9-214ENST00000441542 P3H3Q8IVL6 736 aa10.26□□□□□ -0.77
HDAC9-214ENST00000441542 ERICH6BQ5W0A0 696 aa10.26□□□□□ -0.77
HDAC9-214ENST00000441542 TONSLQ96HA7 1378 aa10.23□□□□□ -0.77
HDAC9-214ENST00000441542 KIF21BO75037 1637 aa10.22□□□□□ -0.77
HDAC9-214ENST00000441542 ATAD2BQ9ULI0 1458 aa10.21□□□□□ -0.77
HDAC9-214ENST00000441542 SLC4A3P48751 1232 aa10.2□□□□□ -0.78
HDAC9-214ENST00000441542 TAOK2Q9UL54 1235 aa10.19□□□□□ -0.78
HDAC9-214ENST00000441542 SKAP1Q86WV1 359 aa10.18□□□□□ -0.78
HDAC9-214ENST00000441542 TOP2AP11388 1531 aaKnown RBP10.17□□□□□ -0.78
HDAC9-214ENST00000441542 SETD5Q9C0A6 1442 aa10.17□□□□□ -0.78
HDAC9-214ENST00000441542 MAPKBP1O60336 1514 aa10.16□□□□□ -0.78
HDAC9-214ENST00000441542 HSPA5P11021 654 aaKnown RBP10.16□□□□□ -0.78
HDAC9-214ENST00000441542 AKNAQ7Z591 1439 aa10.16□□□□□ -0.78
HDAC9-214ENST00000441542 PDIA4P13667 645 aaKnown RBP10.14□□□□□ -0.79
HDAC9-214ENST00000441542 KCNA4P22459 653 aa10.14□□□□□ -0.79
HDAC9-214ENST00000441542 WASHC2AQ641Q2 1341 aa10.13□□□□□ -0.79
HDAC9-214ENST00000441542 RRBP1Q9P2E9 1410 aaKnown RBP10.12□□□□□ -0.79
HDAC9-214ENST00000441542 ARAP1Q96P48 1450 aa10.12□□□□□ -0.79
HDAC9-214ENST00000441542 KIF21AQ7Z4S6 1674 aa10.11□□□□□ -0.79
HDAC9-214ENST00000441542 NESP48681 1621 aa10.1□□□□□ -0.79
HDAC9-214ENST00000441542 ZNF326Q5BKZ1 582 aaKnown RBP10.09□□□□□ -0.79
HDAC9-214ENST00000441542 FRAT1Q92837 279 aaPredicted RBP10.09□□□□□ -0.79
HDAC9-214ENST00000441542 PKNOX2Q96KN3 472 aa10.09□□□□□ -0.79
HDAC9-214ENST00000441542 CHIC2Q9UKJ5 165 aa10.09□□□□□ -0.79
HDAC9-214ENST00000441542 ERCC6Q03468 1493 aa10.09□□□□□ -0.79
HDAC9-214ENST00000441542 C11orf95C9JLR9 678 aaPredicted RBP10.08□□□□□ -0.8
HDAC9-214ENST00000441542 PDE4AP27815 886 aa10.08□□□□□ -0.8
HDAC9-214ENST00000441542 FOXD1Q16676 465 aa10.08□□□□□ -0.8
HDAC9-214ENST00000441542 PRKRIP1Q9H875 184 aaPredicted RBP10.08□□□□□ -0.8
HDAC9-214ENST00000441542 EXOC6Q8TAG9 804 aa10.08□□□□□ -0.8
HDAC9-214ENST00000441542 SYNJ1O43426 1573 aa10.08□□□□□ -0.8
HDAC9-214ENST00000441542 EIF4G2P78344 907 aaKnown RBP eCLIP10.07□□□□□ -0.8
HDAC9-214ENST00000441542 GSE1Q14687 1217 aa10.07□□□□□ -0.8
HDAC9-214ENST00000441542 PHLDB1Q86UU1 1377 aa10.07□□□□□ -0.8
HDAC9-214ENST00000441542 ARID4BQ4LE39 1312 aaPredicted RBP10.06□□□□□ -0.8
HDAC9-214ENST00000441542 ZBED9Q6R2W3 1325 aa10.06□□□□□ -0.8
HDAC9-214ENST00000441542 RRP7BPQ9NSQ0 103 aa10.06□□□□□ -0.8
HDAC9-214ENST00000441542 PPM1GO15355 546 aaPredicted RBP10.05□□□□□ -0.8
HDAC9-214ENST00000441542 VSIG10Q8N0Z9 540 aa10.05□□□□□ -0.8
HDAC9-214ENST00000441542 NFKBIBQ15653 356 aa10.05□□□□□ -0.8
HDAC9-214ENST00000441542 NUDCQ9Y266 331 aa10.04□□□□□ -0.8
HDAC9-214ENST00000441542 PLIN1O60240 522 aa10.03□□□□□ -0.8
HDAC9-214ENST00000441542 PDE4CQ08493 712 aa10.02□□□□□ -0.81
HDAC9-214ENST00000441542 ARID3CA6NKF2 412 aa10□□□□□ -0.81
HDAC9-214ENST00000441542 FRAT2O75474 233 aaPredicted RBP10□□□□□ -0.81
HDAC9-214ENST00000441542 TMC1Q8TDI8 760 aa10□□□□□ -0.81
HDAC9-214ENST00000441542 NAP1L5Q96NT1 182 aaPredicted RBP9.99□□□□□ -0.81
HDAC9-214ENST00000441542 USP35Q9P2H5 1018 aa9.99□□□□□ -0.81
HDAC9-214ENST00000441542 TPRNQ4KMQ1 711 aa9.99□□□□□ -0.81
HDAC9-214ENST00000441542 WASHC2CQ9Y4E1 1318 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms