RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 PRG4Q92954 1404 aaPredicted RBP35.17■■■■□ 3.22
NCKIPSD-206ENST00000439518 CUL7Q14999 1698 aa35.16■■■■□ 3.22
NCKIPSD-206ENST00000439518 KIAA0586Q9BVV6 1533 aa35.06■■■■□ 3.2
NCKIPSD-206ENST00000439518 CARMIL1Q5VZK9 1371 aa35.06■■■■□ 3.2
NCKIPSD-206ENST00000439518 RAPGEF2Q9Y4G8 1499 aa34.76■■■■□ 3.15
NCKIPSD-206ENST00000439518 IQGAP2Q13576 1575 aa34.74■■■■□ 3.15
NCKIPSD-206ENST00000439518 ADCY10Q96PN6 1610 aa34.72■■■■□ 3.15
NCKIPSD-206ENST00000439518 NPM1P06748 294 aaKnown RBP eCLIP34.68■■■■□ 3.14
NCKIPSD-206ENST00000439518 CARMIL2Q6F5E8 1435 aa34.68■■■■□ 3.14
NCKIPSD-206ENST00000439518 PTPRGP23470 1445 aa34.67■■■■□ 3.14
NCKIPSD-206ENST00000439518 TNIKQ9UKE5 1360 aa34.63■■■■□ 3.13
NCKIPSD-206ENST00000439518 MAPKBP1O60336 1514 aa34.62■■■■□ 3.13
NCKIPSD-206ENST00000439518 KIF13AQ9H1H9 1805 aa34.61■■■■□ 3.13
NCKIPSD-206ENST00000439518 DISP1Q96F81 1524 aa34.59■■■■□ 3.13
NCKIPSD-206ENST00000439518 ABCC10Q5T3U5 1492 aa34.57■■■■□ 3.12
NCKIPSD-206ENST00000439518 UGGT2Q9NYU1 1516 aa34.56■■■■□ 3.12
NCKIPSD-206ENST00000439518 TTBK1Q5TCY1 1321 aaPredicted RBP34.53■■■■□ 3.12
NCKIPSD-206ENST00000439518 PRXQ9BXM0 1461 aa34.52■■■■□ 3.12
NCKIPSD-206ENST00000439518 FAM69CQ0P6D2 419 aa34.51■■■■□ 3.12
NCKIPSD-206ENST00000439518 DIP2BQ9P265 1576 aa34.46■■■■□ 3.11
NCKIPSD-206ENST00000439518 ABCC2Q92887 1545 aa34.45■■■■□ 3.1
NCKIPSD-206ENST00000439518 UHRF1BP1LA0JNW5 1464 aa34.44■■■■□ 3.1
NCKIPSD-206ENST00000439518 UACAQ9BZF9 1416 aa34.42■■■■□ 3.1
NCKIPSD-206ENST00000439518 KIAA0556O60303 1618 aa34.41■■■■□ 3.1
NCKIPSD-206ENST00000439518 CTTNBP2Q8WZ74 1663 aa34.4■■■■□ 3.1
NCKIPSD-206ENST00000439518 CSRNP3Q8WYN3 585 aa34.32■■■■□ 3.08
NCKIPSD-206ENST00000439518 ASXL2Q76L83 1435 aa34.3■■■■□ 3.08
NCKIPSD-206ENST00000439518 GOLGA3Q08378 1498 aa34.29■■■■□ 3.08
NCKIPSD-206ENST00000439518 KDM5BQ9UGL1 1544 aa34.28■■■■□ 3.08
NCKIPSD-206ENST00000439518 PLB1Q6P1J6 1458 aa34.27■■■■□ 3.08
NCKIPSD-206ENST00000439518 EEA1Q15075 1411 aa34.21■■■■□ 3.07
NCKIPSD-206ENST00000439518 GLI2P10070 1586 aa34.17■■■■□ 3.06
NCKIPSD-206ENST00000439518 ZCCHC11Q5TAX3 1644 aaKnown RBP34.15■■■■□ 3.06
NCKIPSD-206ENST00000439518 TSPOAP1O95153 1857 aa34.14■■■■□ 3.06
NCKIPSD-206ENST00000439518 ABCA8O94911 1581 aa34.11■■■■□ 3.05
NCKIPSD-206ENST00000439518 EPRSP07814 1512 aaKnown RBP34.09■■■■□ 3.05
NCKIPSD-206ENST00000439518 KDM6BO15054 1643 aa34.05■■■■□ 3.04
NCKIPSD-206ENST00000439518 PPRC1Q5VV67 1664 aaKnown RBP34.02■■■■□ 3.04
NCKIPSD-206ENST00000439518 FAM9AQ8IZU1 332 aaPredicted RBP34.01■■■■□ 3.03
NCKIPSD-206ENST00000439518 WDR7Q9Y4E6 1490 aa34.01■■■■□ 3.03
NCKIPSD-206ENST00000439518 AEBP2Q6ZN18 517 aaPredicted RBP34■■■■□ 3.03
NCKIPSD-206ENST00000439518 P3H3Q8IVL6 736 aa34■■■■□ 3.03
NCKIPSD-206ENST00000439518 SAMD9Q5K651 1589 aa33.98■■■■□ 3.03
NCKIPSD-206ENST00000439518 MAP3K4Q9Y6R4 1608 aa33.97■■■■□ 3.03
NCKIPSD-206ENST00000439518 CHIC1Q5VXU3 224 aa33.96■■■■□ 3.03
NCKIPSD-206ENST00000439518 KIF21BO75037 1637 aa33.9■■■■□ 3.02
NCKIPSD-206ENST00000439518 TEX14Q8IWB6 1497 aa33.85■■■■□ 3.01
NCKIPSD-206ENST00000439518 ATP10BO94823 1461 aa33.84■■■■□ 3.01
NCKIPSD-206ENST00000439518 KCNH8Q96L42 1107 aa33.82■■■■□ 3
NCKIPSD-206ENST00000439518 COL17A1Q9UMD9 1497 aaPredicted RBP33.82■■■■□ 3
NCKIPSD-206ENST00000439518 RANGAP1P46060 587 aaPredicted RBP33.8■■■■□ 3
NCKIPSD-206ENST00000439518 ARID3CA6NKF2 412 aa33.79■■■■□ 3
NCKIPSD-206ENST00000439518 CD109Q6YHK3 1445 aa33.77■■■■□ 3
NCKIPSD-206ENST00000439518 RAPGEF6Q8TEU7 1601 aa33.76■■■■□ 3
NCKIPSD-206ENST00000439518 FHOD3Q2V2M9 1422 aa33.76■■■□□ 2.99
NCKIPSD-206ENST00000439518 CFAP43Q8NDM7 1665 aa33.75■■■□□ 2.99
NCKIPSD-206ENST00000439518 MAGI3Q5TCQ9 1506 aa33.74■■■□□ 2.99
NCKIPSD-206ENST00000439518 EFCAB5A4FU69 1503 aa33.7■■■□□ 2.99
NCKIPSD-206ENST00000439518 NUP153P49790 1475 aaKnown RBP33.69■■■□□ 2.98
NCKIPSD-206ENST00000439518 KDM4FA0A1W2PPD8 638 aa33.65■■■□□ 2.98
NCKIPSD-206ENST00000439518 UBTFP17480 764 aaKnown RBP33.62■■■□□ 2.97
NCKIPSD-206ENST00000439518 EHMT2Q96KQ7 1210 aa33.6■■■□□ 2.97
NCKIPSD-206ENST00000439518 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.58■■■□□ 2.97
NCKIPSD-206ENST00000439518 HNRNPUL2Q1KMD3 747 aaKnown RBP33.58■■■□□ 2.97
NCKIPSD-206ENST00000439518 ABCA9Q8IUA7 1624 aa33.57■■■□□ 2.97
NCKIPSD-206ENST00000439518 ARAP3Q8WWN8 1544 aa33.48■■■□□ 2.95
NCKIPSD-206ENST00000439518 PLEKHD1A6NEE1 506 aa33.47■■■□□ 2.95
NCKIPSD-206ENST00000439518 ARHGAP35Q9NRY4 1499 aa33.47■■■□□ 2.95
NCKIPSD-206ENST00000439518 PHLDB1Q86UU1 1377 aa33.46■■■□□ 2.95
NCKIPSD-206ENST00000439518 ADGRL1O94910 1474 aa33.42■■■□□ 2.94
NCKIPSD-206ENST00000439518 FMN1Q68DA7 1419 aa33.4■■■□□ 2.94
NCKIPSD-206ENST00000439518 NEO1Q92859 1461 aa33.39■■■□□ 2.94
NCKIPSD-206ENST00000439518 CDK13Q14004 1512 aaKnown RBP33.37■■■□□ 2.93
NCKIPSD-206ENST00000439518 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.31■■■□□ 2.92
NCKIPSD-206ENST00000439518 HECW1Q76N89 1606 aa33.29■■■□□ 2.92
NCKIPSD-206ENST00000439518 RAPGEF3O95398 923 aa33.28■■■□□ 2.92
NCKIPSD-206ENST00000439518 ATP1B4Q9UN42 357 aaPredicted RBP33.26■■■□□ 2.91
NCKIPSD-206ENST00000439518 TTC37Q6PGP7 1564 aa33.25■■■□□ 2.91
NCKIPSD-206ENST00000439518 FANCAO15360 1455 aa33.2■■■□□ 2.91
NCKIPSD-206ENST00000439518 FRMPD1Q5SYB0 1578 aa33.2■■■□□ 2.91
NCKIPSD-206ENST00000439518 AKNAQ7Z591 1439 aa33.19■■■□□ 2.9
NCKIPSD-206ENST00000439518 CDK11AQ9UQ88 783 aaPredicted RBP33.17■■■□□ 2.9
NCKIPSD-206ENST00000439518 CFAP74Q9C0B2 1584 aa33.15■■■□□ 2.9
NCKIPSD-206ENST00000439518 DENND4BO75064 1496 aaPredicted RBP33.14■■■□□ 2.9
NCKIPSD-206ENST00000439518 PLCH2O75038 1416 aa33.12■■■□□ 2.89
NCKIPSD-206ENST00000439518 TROQ12816 1431 aaPredicted RBP33.1■■■□□ 2.89
NCKIPSD-206ENST00000439518 CASKIN1Q8WXD9 1431 aa33.1■■■□□ 2.89
NCKIPSD-206ENST00000439518 LRRIQ1Q96JM4 1722 aa33.09■■■□□ 2.89
NCKIPSD-206ENST00000439518 RICTORQ6R327 1708 aa33.08■■■□□ 2.89
NCKIPSD-206ENST00000439518 PCF11O94913 1555 aaKnown RBP33.05■■■□□ 2.88
NCKIPSD-206ENST00000439518 CLIP1P30622 1438 aa33.04■■■□□ 2.88
NCKIPSD-206ENST00000439518 KIF14Q15058 1648 aa33.04■■■□□ 2.88
NCKIPSD-206ENST00000439518 CCDC18Q5T9S5 1454 aa33■■■□□ 2.87
NCKIPSD-206ENST00000439518 ZMYM4Q5VZL5 1548 aa32.99■■■□□ 2.87
NCKIPSD-206ENST00000439518 ARHGEF40Q8TER5 1519 aa32.99■■■□□ 2.87
NCKIPSD-206ENST00000439518 EFCAB2Q5VUJ9 269 aa32.99■■■□□ 2.87
NCKIPSD-206ENST00000439518 MYO5CQ9NQX4 1742 aa32.99■■■□□ 2.87
NCKIPSD-206ENST00000439518 SCAPERQ9BY12 1400 aa32.98■■■□□ 2.87
NCKIPSD-206ENST00000439518 FYCO1Q9BQS8 1478 aa32.97■■■□□ 2.87
NCKIPSD-206ENST00000439518 ADAMTSL3P82987 1691 aa32.94■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms